Ggra5916.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5916.t1
Unique NameGgra5916.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length512
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:510249..511784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5916Ggra5916Gracilaria gracilis GNS1m malegenetig00000068_pilon 510249..511784 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5916.t1.stop1Ggra5916.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 510249..510251 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5916.t1.CDS1Ggra5916.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 510249..511784 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5916.t1.exon1Ggra5916.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 510249..511784 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5916.t1.start1Ggra5916.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 511782..511784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5916.t1Ggra5916.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 510249..511784 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5916.t1 ID=Ggra5916.t1|Name=Ggra5916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=512bp
MHMNRPDFPSPPPPVALPHPAPVSAAPPSLPAHSSAPHSLPLHLPSTSVA
TLNLPLPYQPASHFAPVKPQPAPDPDSNRARAPAPLPHDVVAVTRPLPSP
QLDGAPPPPPPSLKSDQVLQKPSVNHNVYASSNMPTVTPLTPMPNLHALH
SLHALPAMHSFSSMPSIPPMPSMAHMSSMPSMPPLLQPHDSLPHPLSSAH
LSSQVSSDITSPGILSGAVDKRRKARANRVISYDSAMLSNDDATTMMMAA
HHASHLPSPTDAAVAALTSSHPVYEADGIQFKLLEQLPDQKIKRLRDEKI
KPIEALTFTDIKTYNRNQLRAYCSVYGIRRKKKADMERDMARYASLFHPN
DPEYDIAKFKPTEYAEGPIPRRKVPVTKAEKEKAAGDVRHLTNALQQRPH
SHSLSSHYSSVAASAHARGAVSNAALHALGASPSLPPAFGSRFPDVRGVY
GAPMAHHAATVHHGAHGGDAPTTHAEEHDETTGISSSALLSVPEMHVPNH
LLSISHTIGEE*
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spliced messenger RNA

>Ggra5916.t1 ID=Ggra5916.t1|Name=Ggra5916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1536bp|location=Sequence derived from alignment at tig00000068_pilon:510249..511784- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATATGAATCGCCCCGACTTCCCTTCCCCTCCTCCGCCCGTCGCGCT
CCCGCACCCGGCCCCCGTCTCAGCCGCGCCGCCCTCGCTGCCCGCCCATT
CCTCAGCCCCCCATTCGCTCCCCCTACACCTCCCTTCCACCTCCGTCGCT
ACCCTCAACCTGCCGCTGCCATACCAGCCGGCCTCGCACTTCGCGCCCGT
CAAGCCGCAGCCCGCGCCCGACCCCGACTCCAACCGCGCGCGCGCGCCCG
CCCCGCTGCCGCACGACGTCGTCGCCGTCACCCGTCCCCTTCCGTCGCCG
CAGCTCGATGGCGCGCCTCCGCCGCCGCCGCCGTCGCTCAAGTCGGATCA
GGTCTTGCAAAAACCGTCCGTCAACCACAACGTGTACGCTTCGTCCAATA
TGCCCACCGTCACTCCGCTCACTCCTATGCCCAATCTCCACGCGCTGCAC
TCGTTGCATGCATTGCCTGCTATGCATTCGTTCTCGTCTATGCCGTCTAT
CCCGCCAATGCCCTCCATGGCGCACATGTCCTCTATGCCCTCTATGCCGC
CGTTGCTACAACCGCATGACTCCCTGCCGCACCCGTTGTCGTCGGCGCAC
TTGTCGTCGCAGGTTAGCAGTGATATCACCTCGCCGGGCATTTTATCGGG
CGCCGTGGACAAACGGCGCAAGGCGCGCGCCAACCGTGTCATATCGTATG
ATAGCGCTATGCTCAGTAATGATGATGCTACCACTATGATGATGGCCGCG
CATCACGCTTCGCATTTGCCGTCGCCTACGGACGCTGCCGTGGCTGCGCT
CACATCGTCGCACCCGGTGTATGAGGCTGATGGAATCCAATTCAAGCTGT
TGGAACAACTGCCCGACCAGAAGATCAAGCGGCTGCGAGACGAGAAAATC
AAACCTATCGAGGCTCTTACTTTTACCGACATCAAGACTTATAACAGAAA
CCAACTGCGCGCCTACTGCTCTGTATACGGCATCCGCCGCAAGAAGAAGG
CCGACATGGAGCGTGATATGGCCAGATACGCCTCGCTGTTCCACCCAAAT
GATCCTGAGTACGATATTGCCAAGTTCAAGCCCACCGAGTACGCGGAGGG
ACCCATCCCGCGCCGGAAAGTTCCCGTCACCAAGGCCGAGAAGGAGAAGG
CCGCTGGCGATGTACGACATCTCACCAACGCTCTGCAGCAGCGCCCGCAC
TCACACTCGCTCAGCTCACATTACTCGTCGGTGGCAGCCAGTGCGCATGC
GCGTGGCGCAGTGTCCAACGCCGCGCTTCACGCACTGGGCGCCTCACCGT
CGCTACCGCCCGCGTTTGGAAGCCGCTTCCCGGACGTGCGCGGCGTGTAT
GGCGCACCTATGGCGCATCACGCCGCCACCGTGCATCATGGCGCACATGG
TGGCGACGCTCCAACGACGCACGCCGAGGAGCATGATGAGACCACTGGCA
TTTCGAGCTCGGCGCTTCTTTCGGTGCCCGAGATGCATGTACCTAATCAC
CTGCTTAGCATCTCGCATACGATCGGGGAAGAATAG
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protein sequence of Ggra5916.t1

>Ggra5916.t1 ID=Ggra5916.t1|Name=Ggra5916.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=512bp
MHMNRPDFPSPPPPVALPHPAPVSAAPPSLPAHSSAPHSLPLHLPSTSVA
TLNLPLPYQPASHFAPVKPQPAPDPDSNRARAPAPLPHDVVAVTRPLPSP
QLDGAPPPPPPSLKSDQVLQKPSVNHNVYASSNMPTVTPLTPMPNLHALH
SLHALPAMHSFSSMPSIPPMPSMAHMSSMPSMPPLLQPHDSLPHPLSSAH
LSSQVSSDITSPGILSGAVDKRRKARANRVISYDSAMLSNDDATTMMMAA
HHASHLPSPTDAAVAALTSSHPVYEADGIQFKLLEQLPDQKIKRLRDEKI
KPIEALTFTDIKTYNRNQLRAYCSVYGIRRKKKADMERDMARYASLFHPN
DPEYDIAKFKPTEYAEGPIPRRKVPVTKAEKEKAAGDVRHLTNALQQRPH
SHSLSSHYSSVAASAHARGAVSNAALHALGASPSLPPAFGSRFPDVRGVY
GAPMAHHAATVHHGAHGGDAPTTHAEEHDETTGISSSALLSVPEMHVPNH
LLSISHTIGEE*
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mRNA from alignment at tig00000068_pilon:510249..511784-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5916.t1 ID=Ggra5916.t1|Name=Ggra5916.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1536bp|location=Sequence derived from alignment at tig00000068_pilon:510249..511784- (Gracilaria gracilis GNS1m male)
ATGCATATGAATCGCCCCGACTTCCCTTCCCCTCCTCCGCCCGTCGCGCT
CCCGCACCCGGCCCCCGTCTCAGCCGCGCCGCCCTCGCTGCCCGCCCATT
CCTCAGCCCCCCATTCGCTCCCCCTACACCTCCCTTCCACCTCCGTCGCT
ACCCTCAACCTGCCGCTGCCATACCAGCCGGCCTCGCACTTCGCGCCCGT
CAAGCCGCAGCCCGCGCCCGACCCCGACTCCAACCGCGCGCGCGCGCCCG
CCCCGCTGCCGCACGACGTCGTCGCCGTCACCCGTCCCCTTCCGTCGCCG
CAGCTCGATGGCGCGCCTCCGCCGCCGCCGCCGTCGCTCAAGTCGGATCA
GGTCTTGCAAAAACCGTCCGTCAACCACAACGTGTACGCTTCGTCCAATA
TGCCCACCGTCACTCCGCTCACTCCTATGCCCAATCTCCACGCGCTGCAC
TCGTTGCATGCATTGCCTGCTATGCATTCGTTCTCGTCTATGCCGTCTAT
CCCGCCAATGCCCTCCATGGCGCACATGTCCTCTATGCCCTCTATGCCGC
CGTTGCTACAACCGCATGACTCCCTGCCGCACCCGTTGTCGTCGGCGCAC
TTGTCGTCGCAGGTTAGCAGTGATATCACCTCGCCGGGCATTTTATCGGG
CGCCGTGGACAAACGGCGCAAGGCGCGCGCCAACCGTGTCATATCGTATG
ATAGCGCTATGCTCAGTAATGATGATGCTACCACTATGATGATGGCCGCG
CATCACGCTTCGCATTTGCCGTCGCCTACGGACGCTGCCGTGGCTGCGCT
CACATCGTCGCACCCGGTGTATGAGGCTGATGGAATCCAATTCAAGCTGT
TGGAACAACTGCCCGACCAGAAGATCAAGCGGCTGCGAGACGAGAAAATC
AAACCTATCGAGGCTCTTACTTTTACCGACATCAAGACTTATAACAGAAA
CCAACTGCGCGCCTACTGCTCTGTATACGGCATCCGCCGCAAGAAGAAGG
CCGACATGGAGCGTGATATGGCCAGATACGCCTCGCTGTTCCACCCAAAT
GATCCTGAGTACGATATTGCCAAGTTCAAGCCCACCGAGTACGCGGAGGG
ACCCATCCCGCGCCGGAAAGTTCCCGTCACCAAGGCCGAGAAGGAGAAGG
CCGCTGGCGATGTACGACATCTCACCAACGCTCTGCAGCAGCGCCCGCAC
TCACACTCGCTCAGCTCACATTACTCGTCGGTGGCAGCCAGTGCGCATGC
GCGTGGCGCAGTGTCCAACGCCGCGCTTCACGCACTGGGCGCCTCACCGT
CGCTACCGCCCGCGTTTGGAAGCCGCTTCCCGGACGTGCGCGGCGTGTAT
GGCGCACCTATGGCGCATCACGCCGCCACCGTGCATCATGGCGCACATGG
TGGCGACGCTCCAACGACGCACGCCGAGGAGCATGATGAGACCACTGGCA
TTTCGAGCTCGGCGCTTCTTTCGGTGCCCGAGATGCATGTACCTAATCAC
CTGCTTAGCATCTCGCATACGATCGGGGAAGAATAG
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Coding sequence (CDS) from alignment at tig00000068_pilon:510249..511784-

>Ggra5916.t1 ID=Ggra5916.t1|Name=Ggra5916.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1536bp|location=Sequence derived from alignment at tig00000068_pilon:510249..511784- (Gracilaria gracilis GNS1m male)
ATGCATATGAATCGCCCCGACTTCCCTTCCCCTCCTCCGCCCGTCGCGCT
CCCGCACCCGGCCCCCGTCTCAGCCGCGCCGCCCTCGCTGCCCGCCCATT
CCTCAGCCCCCCATTCGCTCCCCCTACACCTCCCTTCCACCTCCGTCGCT
ACCCTCAACCTGCCGCTGCCATACCAGCCGGCCTCGCACTTCGCGCCCGT
CAAGCCGCAGCCCGCGCCCGACCCCGACTCCAACCGCGCGCGCGCGCCCG
CCCCGCTGCCGCACGACGTCGTCGCCGTCACCCGTCCCCTTCCGTCGCCG
CAGCTCGATGGCGCGCCTCCGCCGCCGCCGCCGTCGCTCAAGTCGGATCA
GGTCTTGCAAAAACCGTCCGTCAACCACAACGTGTACGCTTCGTCCAATA
TGCCCACCGTCACTCCGCTCACTCCTATGCCCAATCTCCACGCGCTGCAC
TCGTTGCATGCATTGCCTGCTATGCATTCGTTCTCGTCTATGCCGTCTAT
CCCGCCAATGCCCTCCATGGCGCACATGTCCTCTATGCCCTCTATGCCGC
CGTTGCTACAACCGCATGACTCCCTGCCGCACCCGTTGTCGTCGGCGCAC
TTGTCGTCGCAGGTTAGCAGTGATATCACCTCGCCGGGCATTTTATCGGG
CGCCGTGGACAAACGGCGCAAGGCGCGCGCCAACCGTGTCATATCGTATG
ATAGCGCTATGCTCAGTAATGATGATGCTACCACTATGATGATGGCCGCG
CATCACGCTTCGCATTTGCCGTCGCCTACGGACGCTGCCGTGGCTGCGCT
CACATCGTCGCACCCGGTGTATGAGGCTGATGGAATCCAATTCAAGCTGT
TGGAACAACTGCCCGACCAGAAGATCAAGCGGCTGCGAGACGAGAAAATC
AAACCTATCGAGGCTCTTACTTTTACCGACATCAAGACTTATAACAGAAA
CCAACTGCGCGCCTACTGCTCTGTATACGGCATCCGCCGCAAGAAGAAGG
CCGACATGGAGCGTGATATGGCCAGATACGCCTCGCTGTTCCACCCAAAT
GATCCTGAGTACGATATTGCCAAGTTCAAGCCCACCGAGTACGCGGAGGG
ACCCATCCCGCGCCGGAAAGTTCCCGTCACCAAGGCCGAGAAGGAGAAGG
CCGCTGGCGATGTACGACATCTCACCAACGCTCTGCAGCAGCGCCCGCAC
TCACACTCGCTCAGCTCACATTACTCGTCGGTGGCAGCCAGTGCGCATGC
GCGTGGCGCAGTGTCCAACGCCGCGCTTCACGCACTGGGCGCCTCACCGT
CGCTACCGCCCGCGTTTGGAAGCCGCTTCCCGGACGTGCGCGGCGTGTAT
GGCGCACCTATGGCGCATCACGCCGCCACCGTGCATCATGGCGCACATGG
TGGCGACGCTCCAACGACGCACGCCGAGGAGCATGATGAGACCACTGGCA
TTTCGAGCTCGGCGCTTCTTTCGGTGCCCGAGATGCATGTACCTAATCAC
CTGCTTAGCATCTCGCATACGATCGGGGAAGAATAG
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