Ggra5934.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5934.t1
Unique NameGgra5934.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length112
Homology
BLAST of Ggra5934.t1 vs. uniprot
Match: A0A2V3J385 (DNA-directed RNA polymerase subunit n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J385_9FLOR)

HSP 1 Score: 153 bits (386), Expect = 5.450e-46
Identity = 72/96 (75.00%), Postives = 84/96 (87.50%), Query Frame = 0
Query:    1 MENVLFCAFCGSFREIFDSGDKKVKCKLCNKEVNLSDLTSQLQASVEVLPIERSELLLQLYGQTAEKRKADDAVIDEDCPKCGHPKLSFTTAQLRG 96
            MENVLFC+FCG+FREI DSG ++VKC  C+   +LS++TSQL+ SVEVL +ERSELLLQLYGQT+EK KADDA ID+DCPKCGH KLSFTTAQLRG
Sbjct:    1 MENVLFCSFCGAFREIIDSGQQQVKCTQCDTRTDLSEITSQLKKSVEVLQMERSELLLQLYGQTSEKVKADDATIDDDCPKCGHSKLSFTTAQLRG 96          
BLAST of Ggra5934.t1 vs. uniprot
Match: D8M1K7 (DNA-directed RNA polymerase subunit n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M1K7_BLAHO)

HSP 1 Score: 55.1 bits (131), Expect = 2.270e-7
Identity = 34/98 (34.69%), Postives = 56/98 (57.14%), Query Frame = 0
Query:    1 MENVLFCAFCGSFREIFDSGDKKVKCKLCNKEVNLSDLTSQ-LQASVEVLPIER--SELLLQLYGQTAEKRKADDAVIDEDCPKCGHPKLSFTTAQLR 95
            + NV FC  CGS  ++ +SG   ++C +C+ +  +SDL++  +  S    P+ +   EL  Q   Q    R    A++DE+CP+C +P++SF T QLR
Sbjct:   15 VNNVEFCKVCGSILDLPESGT--IECGICHWKCQMSDLSNTTIITSSHPKPVPQWVHELQQQEKIQVGPTR----ALVDEECPRCKNPQMSFYTLQLR 106          
BLAST of Ggra5934.t1 vs. uniprot
Match: A0A7S1X9J3 (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1X9J3_9RHOD)

HSP 1 Score: 53.5 bits (127), Expect = 1.170e-6
Identity = 34/96 (35.42%), Postives = 42/96 (43.75%), Query Frame = 0
Query:    6 FCAFCGSFREIFDSGDKKVKCKLCN----KEVNLSDLTSQLQASVEVLPIERSELLLQLYGQTAEKRKADDAVIDEDCPKCGHPKLSFTTAQLRGS 97
            FC  CG           +  C  C     +E   SD            P E SELL  L  +  E   AD A IDE CP+CG+PK+ FTT Q+R +
Sbjct:   28 FCRECGMLWADGAEAGTRATCSECGAVEEREPGRSDFV--------FYPQEPSELLHSLREKFVESSGADHAEIDEPCPRCGNPKMRFTTVQMRSA 115          
BLAST of Ggra5934.t1 vs. uniprot
Match: A0A7S1X931 (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1X931_9RHOD)

HSP 1 Score: 52.8 bits (125), Expect = 1.950e-6
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 0
Query:   50 PIERSELLLQLYGQTAEKRKADDAVIDEDCPKCGHPKLSFTTAQLRGS 97
            P E SELL  L  +  E   AD A IDE CP+CG+PK+ FTT Q+R +
Sbjct:   59 PQEPSELLHSLREKFVESSGADHAEIDEPCPRCGNPKMRFTTVQMRSA 106          
BLAST of Ggra5934.t1 vs. uniprot
Match: DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007113146 (DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI0007113146)

HSP 1 Score: 52.4 bits (124), Expect = 2.070e-6
Identity = 33/102 (32.35%), Postives = 53/102 (51.96%), Query Frame = 0
Query:    1 MENVLFCAFCGSFREIFDSGDKKVKCKLCNKEVNLSDLTSQLQASVEVLPIERSELLLQLYGQTAEKRKADD-------AVIDEDCPKCGHPKLSFTTAQLR 95
            + NV FC  CGS  +I +SG+  ++C +C+   +LS                  +L L LY    E ++ +D       A++DE+CP+C +P++SF T QLR
Sbjct:   15 VNNVEFCRVCGSILDIPESGN--IECGICHWTCHLS-----------------VDLNLFLYHWLRELQQKEDVQTGPTRAMVDEECPRCKNPQMSFYTLQLR 97          
The following BLAST results are available for this feature:
BLAST of Ggra5934.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J3855.450e-4675.00DNA-directed RNA polymerase subunit n=1 Tax=Gracil... [more]
D8M1K72.270e-734.69DNA-directed RNA polymerase subunit n=1 Tax=Blasto... [more]
A0A7S1X9J31.170e-635.42DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]
A0A7S1X9311.950e-652.08DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]
DNA-directed RNA polymerase I subunit RPA12 n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI00071131462.070e-632.35DNA-directed RNA polymerase I subunit RPA12 n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:604554..605122 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5934.t1Ggra5934.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 604554..605122 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5934.t1 ID=Ggra5934.t1|Name=Ggra5934.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=112bp
MENVLFCAFCGSFREIFDSGDKKVKCKLCNKEVNLSDLTSQLQASVEVLP
IERSELLLQLYGQTAEKRKADDAVIDEDCPKCGHPKLSFTTAQLRGSILE
DLSLRWGYAER*
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