Ggra5922.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5922.t1
Unique NameGgra5922.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length747
Homology
BLAST of Ggra5922.t1 vs. uniprot
Match: A0A2V3IT27 (Zinc finger CCCH domain-containing protein 41 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT27_9FLOR)

HSP 1 Score: 754 bits (1946), Expect = 2.210e-263
Identity = 499/763 (65.40%), Postives = 569/763 (74.57%), Query Frame = 0
Query:    1 MAASARAWSVAKLRELNFEGDAEALGQYIDAVIENNRDAENGDPELLRAQVTRDLHDFLADSAAATFVDALMRHLSPNAAAAAPSTPAATAARPSXXXXXXXXXXXXXXXXXXSHVDEKLRQPLSES--RRRSPRRDRVEKGRVENE---RAEPAQRRPDRHERRPSRQTVMARLGDRAEDPREQHKRQRPRDPKPXXXXXXXXXQPRAARDRXXERDRQNAVARGMRSMSGDVWDRLGPRNVKRPRDEPMDMRERRDSDERDAKHRRGTDGGRRRSDNFDRQRPADDRSRRDDRPGRIAASAFEQNGKAPPPWPHNIVAAQMGLLPPPPF--HGMXXXXPHLLPNMGAGGTGXXXXXXRGRGGFRGRESSRP-LPQNGVSNPS--NSKYKHFILLVMHIPDDRMMMGPIYAFFQRFGMLRDVQRFPPDKAFIMFDRRESAQHALSSVDAVMGNRHIRLRWARESDFAEAGLRLTDDGTLAEDEQGKKHAREEEHVTPTTPPRL-----ESRATPPDHRARFDVEKEKKIREAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTARKQQLLARQHEIFAKIPNASDEEKLKMKNELAAIQEETLAVQQELKPKPLAAPKPEAMKRFAPAASAYRVDNRPKQILVRGAKNDVLPDGAASAFHDTERAEHFGKSEWLLTFLSRRAAESAMRAQKVLKRSFGPEATAIIVSPAMLETIKQNSGV-HTNAAIHPSPPDV-KTDVSMMDDSVKARSASAVAE 746
            MAASARAWSVAKLRELNFEGDAEALGQYIDAVIENNRDAENGDP+LLR+QVTRDL DFLA+SAA +FVDALMRHLSPN+ +  P     TAA P                   SHVDEKLRQPLS S  RRRSPRRDR EK R++N+   R++PA RR DR +RRP+RQTVM RLGDR ED RE HKRQR  DPK   XXXX     R  R+R   +       R  R  SGD+ DRLG RN KRPR++P D R+RRD DERD+KHRR TD  RRRSDN+DRQR  DDR RRDDRPG I    ++QNGKAPPPWP  IVA QMG         HG+    P L+P MG           RGRGGFR RES R  +     +NPS  NSKY+HFIL+   IP+D+MM+GPIYAFFQRFGML+DV RFPPDKAFI+FDRR+SAQHALSSVDAVMGNRHI+L WAR+SDFAEAGLRLTD+GTL EDE  KK A +                 + R TP + + R +   EKK+R+ A  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTARKQQLLARQHEIFAKI +A+DEEKL+MKNEL A+QEET+ VQQ+LKPKP+AAPKP+  KRF  + SAYRVDNRPKQ+LVRGAKNDVL DGAASAFHDTERAE FGK+EWLLTFLSRRAAESA+RAQKVLKR+FG +ATA+I+SPAMLE  +  + V  T+A  + SPP V K D+ MM+ S KA++ASAVA+
Sbjct:    1 MAASARAWSVAKLRELNFEGDAEALGQYIDAVIENNRDAENGDPDLLRSQVTRDLQDFLAESAAGSFVDALMRHLSPNSTSVKPPQ---TAAEPKPEPSRP------------SHVDEKLRQPLSSSEPRRRSPRRDRAEKQRLDNDSRDRSDPAHRRVDRVDRRPNRQTVMQRLGDRVEDLRE-HKRQRTWDPKSPRXXXXSRQPNRLVRERQPVQG-----PRPNRLNSGDIRDRLGSRNPKRPREDPNDNRDRRDLDERDSKHRRQTDSARRRSDNYDRQRLPDDRPRRDDRPGHITPPRYDQNGKAPPPWPPGIVA-QMGXXXXXXXXPHGILPPVPPLIPGMGT----------RGRGGFRSRESGRAAMSHTAGNNPSAANSKYRHFILVAKAIPEDKMMIGPIYAFFQRFGMLKDVVRFPPDKAFILFDRRDSAQHALSSVDAVMGNRHIKLSWARDSDFAEAGLRLTDEGTLVEDEHPKKPANQHHXXXXXXXXXXXXXXXDPRPTPSEQKLRAESG-EKKVRQVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTARKQQLLARQHEIFAKISSANDEEKLRMKNELVAVQEETIQVQQQLKPKPVAAPKPDTAKRFTHSPSAYRVDNRPKQVLVRGAKNDVLADGAASAFHDTERAESFGKNEWLLTFLSRRAAESAIRAQKVLKRTFGTDATAVIISPAMLEAAQSTASVADTDATKNVSPPAVVKADMKMMEVSDKAQNASAVAK 730          
BLAST of Ggra5922.t1 vs. uniprot
Match: R7QP76 (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP76_CHOCR)

HSP 1 Score: 145 bits (365), Expect = 2.420e-33
Identity = 124/392 (31.63%), Postives = 183/392 (46.68%), Query Frame = 0
Query:  370 NGVSNPSNSKYKHFILLVMHIPDDRMMMGPIYAFFQRFGMLRDVQRFPPDKAFIMFDRRESAQHALSSVDAVMGNRHIRLRWARESDFAEAGLRLTDDGTLAEDEQGKKHAREEEHVTPTTPP-------------RLESRATPPDHRARFDVEKEKKIREAAEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTARKQQLLARQHEIFAKIPNASDEE-KLKMKNELAAIQEETLAVQQELKPKPLAAPKPEAMKRFAPAASA-------------------YRVDNRPKQILVRGAKNDVLPDGAASAFHDTERAEHFGKSEWLLTFLSRRAAESAMRAQKVLKRSFGPEATAIIVSPAMLETIKQNSGVHTNAAIHPSPPDVKTD 728
            +G +  +  + ++F+L + ++P+D++ +  I  FF+ +G   +VQ   PD+AFI++  RE AQ A  SVDA+MGNRHIRL WA   D+  +GL LTD+G L +   G++  R++                      R ESR+    H      +KE + +EAA+                                   ARK+QL+  Q  +FA +  A D+  KL++  +  AI  +   V   L PK  A     +  R A + SA                   + VDNRPK + + GAK DV+ + A S FH+T  AE  G + WLL F +RRAAESAMRA+  LKR FG  A + IV+ A             N  + P+ P  + D
Sbjct:   55 DGQAAQAGGRKQYFVLAMRNVPEDKLKLPHILKFFENYGTPDNVQLVTPDRAFIIYASREPAQAATKSVDAIMGNRHIRLGWATAQDYDVSGLELTDEGVL-QPSTGRRKTRDDRRGXXXXXXXXRNDGNRGEGGARKESRSAA--HGMNAVAKKEAEKQEAAK-------AAEEDLRKKRAAIAEARAKQDEVKTQLQARKKQLVDEQKVLFASMATAGDQAAKLELFRKAKAIDSQLEQVVSGLNPKAGAV---ASTARVAASPSARGGASGRXXXXXXXGRFEGFSVDNRPKTLQIMGAKADVVVETAISVFHETLSAEKVG-AFWLLNFPTRRAAESAMRARGPLKRGFGAAAMSQIVAGA------------NNTGVQPAQPAQRLD 420          
BLAST of Ggra5922.t1 vs. uniprot
Match: A0A7S0ZK21 (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZK21_9RHOD)

HSP 1 Score: 69.7 bits (169), Expect = 8.630e-9
Identity = 40/127 (31.50%), Postives = 67/127 (52.76%), Query Frame = 0
Query:  339 NMGAGGT--GXXXXXXRGRGGFRGRESSRPLPQNGVSNPSNSKYKHFILLVMHIPDDRMMMGPIYAFFQRFGMLRDVQRFP---PDKAFIMFDRRESAQHALSSVDAVMGNRHIRLRWARESDFAEA 460
            + GA G   G      RG G   G     P P +G  +          L+V ++PDD++ +  I  +F++FG + ++Q  P   PD+A++ F  ++ AQ A+ S++A+MGNRH+R+ WA      +A
Sbjct:  265 SFGASGVRRGAPDRGGRGGGXXGGLRDRNPRPVDGEGSERT-------LVVRNLPDDKLNIMEIGEWFKQFGTITNIQLVPAEKPDRAYVEFSAKDMAQAAMESIEAIMGNRHVRIFWAHRDSKVQA 384          
BLAST of Ggra5922.t1 vs. uniprot
Match: A0A1X6PK71 (RRM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PK71_PORUM)

HSP 1 Score: 68.6 bits (166), Expect = 4.010e-8
Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = 0
Query:  385 LLVMHIPDDRMMMGPIYAFFQRFGMLRDVQRFP---PDKAFIMFDRRESAQHALSSVDAVMGNRHIRLRWARESDFAE 459
            L++ ++P D++ +  I ++F RFG +  +Q  P   PD+A + F   +SA  A  SVDAVMGNRH+RL WA+++D+ +
Sbjct:  526 LVLKNVPADKLHVNAILSYFSRFGAVSGIQLRPSTRPDRAVVEFATPDSAGRAYESVDAVMGNRHVRLHWAQKNDYTD 603          
BLAST of Ggra5922.t1 vs. uniprot
Match: A0A4Y7JNN5 (Uncharacterized protein n=2 Tax=Papaver somniferum TaxID=3469 RepID=A0A4Y7JNN5_PAPSO)

HSP 1 Score: 62.0 bits (149), Expect = 3.740e-6
Identity = 34/76 (44.74%), Postives = 47/76 (61.84%), Query Frame = 0
Query:  385 LLVMHIPDDRMMMGPIYAFFQRFGMLRDVQ-RFPPDKAFIMFDRRESAQHALSSVDAVMGNRHIRLRWARESDFAE 459
            L V HIP     + P+ + FQ+FG++ D+       KA+I F +RESA+ A+SS DAV+GNR IRL WA +    E
Sbjct:  561 LYVSHIPPKENKIEPLLSHFQKFGVVDDIFITTDRKKAYIQFSKRESAEAAISSPDAVLGNRFIRLSWAYKDRLLE 636          
The following BLAST results are available for this feature:
BLAST of Ggra5922.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IT272.210e-26365.40Zinc finger CCCH domain-containing protein 41 n=1 ... [more]
R7QP762.420e-3331.63RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A7S0ZK218.630e-931.50Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A1X6PK714.010e-841.03RRM domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A4Y7JNN53.740e-644.74Uncharacterized protein n=2 Tax=Papaver somniferum... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 509..564
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 112..218
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 86..311
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 342..369
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..294
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 468..490
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 497..530
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 714..746
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..111
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 468..530
NoneNo IPR availablePANTHERPTHR14398:SF0ZINC FINGER PROTEIN SWMcoord: 378..685
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 377..459
e-value: 2.8E-5
score: 26.2
IPR045137RNA-binding protein 26/27PANTHERPTHR14398RNA RECOGNITION RRM/RNP DOMAINcoord: 378..685
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 383..454
score: 9.899693
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 370..455

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:542807..545047 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5922.t1Ggra5922.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 542807..545047 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5922.t1 ID=Ggra5922.t1|Name=Ggra5922.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=747bp
MAASARAWSVAKLRELNFEGDAEALGQYIDAVIENNRDAENGDPELLRAQ
VTRDLHDFLADSAAATFVDALMRHLSPNAAAAAPSTPAATAARPSAAANS
ASANIAQQSHARPSHVDEKLRQPLSESRRRSPRRDRVEKGRVENERAEPA
QRRPDRHERRPSRQTVMARLGDRAEDPREQHKRQRPRDPKPSRDPREARQ
QPRAARDRERERDRQNAVARGMRSMSGDVWDRLGPRNVKRPRDEPMDMRE
RRDSDERDAKHRRGTDGGRRRSDNFDRQRPADDRSRRDDRPGRIAASAFE
QNGKAPPPWPHNIVAAQMGLLPPPPFHGMIPPPPHLLPNMGAGGTGGGGG
GGRGRGGFRGRESSRPLPQNGVSNPSNSKYKHFILLVMHIPDDRMMMGPI
YAFFQRFGMLRDVQRFPPDKAFIMFDRRESAQHALSSVDAVMGNRHIRLR
WARESDFAEAGLRLTDDGTLAEDEQGKKHAREEEHVTPTTPPRLESRATP
PDHRARFDVEKEKKIREAAEEKERKMKEAEEDLRRKKEQIAELRRQQDER
IAQLTARKQQLLARQHEIFAKIPNASDEEKLKMKNELAAIQEETLAVQQE
LKPKPLAAPKPEAMKRFAPAASAYRVDNRPKQILVRGAKNDVLPDGAASA
FHDTERAEHFGKSEWLLTFLSRRAAESAMRAQKVLKRSFGPEATAIIVSP
AMLETIKQNSGVHTNAAIHPSPPDVKTDVSMMDDSVKARSASAVAE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait_sf
IPR045137RBM26/27
IPR000504RRM_dom
IPR035979RBD_domain_sf