Ggra5922.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra5922.t1
Unique Name	Ggra5922.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	747

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000068_pilon	contig	tig00000068_pilon:542807..545047 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3218.PP1S43_253V6.1
PFAMs	RRM_1
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K13192
GOs	GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0097159,GO:1901363
Evalue	6.84e-07
EggNOG OGs	KOG2135@1\|root,KOG2135@2759\|Eukaryota,37KMJ@33090\|Viridiplantae,3GFX7@35493\|Streptophyta
Description	Zinc finger CCCH domain-containing protein
COG category	A
BRITE	ko00000,ko01009,ko03019,ko03041

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra5922	Ggra5922	Gracilaria gracilis GNS1m male	gene	tig00000068_pilon 542807..545047 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5922.t1.start1	Ggra5922.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000068_pilon 542807..542809 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5922.t1.CDS1	Ggra5922.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000068_pilon 542807..545047 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5922.t1.exon1	Ggra5922.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000068_pilon 542807..545047 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5922.t1.stop1	Ggra5922.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000068_pilon 545045..545047 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra5922.t1	Ggra5922.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000068_pilon 542807..545047 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000068_pilon:542807..545047+
coding sequence from alignment at tig00000068_pilon:542807..545047+

mRNA sequence

>Ggra5922.t1 ID=Ggra5922.t1|Name=Ggra5922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=747bp
MAASARAWSVAKLRELNFEGDAEALGQYIDAVIENNRDAENGDPELLRAQ
VTRDLHDFLADSAAATFVDALMRHLSPNAAAAAPSTPAATAARPSAAANS
ASANIAQQSHARPSHVDEKLRQPLSESRRRSPRRDRVEKGRVENERAEPA
QRRPDRHERRPSRQTVMARLGDRAEDPREQHKRQRPRDPKPSRDPREARQ
QPRAARDRERERDRQNAVARGMRSMSGDVWDRLGPRNVKRPRDEPMDMRE
RRDSDERDAKHRRGTDGGRRRSDNFDRQRPADDRSRRDDRPGRIAASAFE
QNGKAPPPWPHNIVAAQMGLLPPPPFHGMIPPPPHLLPNMGAGGTGGGGG
GGRGRGGFRGRESSRPLPQNGVSNPSNSKYKHFILLVMHIPDDRMMMGPI
YAFFQRFGMLRDVQRFPPDKAFIMFDRRESAQHALSSVDAVMGNRHIRLR
WARESDFAEAGLRLTDDGTLAEDEQGKKHAREEEHVTPTTPPRLESRATP
PDHRARFDVEKEKKIREAAEEKERKMKEAEEDLRRKKEQIAELRRQQDER
IAQLTARKQQLLARQHEIFAKIPNASDEEKLKMKNELAAIQEETLAVQQE
LKPKPLAAPKPEAMKRFAPAASAYRVDNRPKQILVRGAKNDVLPDGAASA
FHDTERAEHFGKSEWLLTFLSRRAAESAMRAQKVLKRSFGPEATAIIVSP
AMLETIKQNSGVHTNAAIHPSPPDVKTDVSMMDDSVKARSASAVAE*

spliced messenger RNA

>Ggra5922.t1 ID=Ggra5922.t1|Name=Ggra5922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2241bp|location=Sequence derived from alignment at tig00000068_pilon:542807..545047+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCTTCTGCGCGTGCTTGGTCCGTCGCAAAGCTCAGGGAGCTCAA
CTTTGAGGGTGATGCCGAGGCACTTGGGCAGTACATCGACGCCGTCATTG
AAAACAATCGCGACGCCGAGAATGGAGACCCGGAGCTTCTCCGCGCACAA
GTCACGCGCGACCTTCATGATTTTCTCGCCGACTCCGCCGCCGCCACTTT
TGTAGATGCTCTCATGCGACATCTTTCACCAAAcgccgccgccgccgccc
ccagcacacccgctgccaccgccgcgcgaccttctgccgctgccAACTCT
GCGTCGGCCAACATTGCGCAACAGTCACACGCGAGACCCTCGCACGTTGA
TGAGAAGCTGCGACAACCGCTGTCTGAATCGCGTCGCCGTTCACCGCGGA
GAGATCGCGTCGAGAAGGGCCGCGTGGAGAACGAGCGAGCCGAACCCGCA
CAACGACGCCCTGATCGTCACGAAAGACGCCCGTCAAGACAGACCGTCAT
GGCGCGTTTGGGCGACCGTGCCGAGGATCCTAGGGAACAGCACAAGCGTC
AACGTCCGCGCGACCCGAAACCGTCGCGCGATCCGCGTGAAGCGCGACAG
CAACCGCGCGCTGCCCGCGATCGGGAGCGTGAGCGCGATCGACAGAACGC
CGTCGCGCGTGGTATGCGTTCCATGTCGGGCGATGTGTGGGATCGCTTGG
GGCCGCGCAACGTCAAAAGACCGCGCGATGAGCCTATGGACATGCGTGAA
CGTCGCGACTCGGATGAACGAGATGCGAAGCATCGACGTGGCACCGATGG
CGGTCGGCGTAGAAGTGATAACTTTGATCGACAGCGTCCTGCGGATGATC
GGTCGAGACGAGATGATCGCCCAGGGCGTATCGCTGCTTCCGCCTTCGAG
CAAAATGGGAAGGCACCCCCACCTTGGCCGCACAATATTGTTGCTGCCCA
GATGGGTCTCTTACCCCCGCCACCTTTCCATGGCATGATTCCGCCGCCAC
CGCACCTATTACCGAACATGGGTGCTggaggaacaggagggggaggaggt
ggtggtcgaggGCGGGGTGGATTCCGAGGGCGCGAATCGAGCAGACCCTT
GCCGCAGAACGGCGTCAGCAATCCATCCAACTCAAAGTACAAACACTTCA
TTCTTCTTGTCATGCACATTCCAGACGATAGGATGATGATGGGACCTATT
TACGCGTTCTTTCAACGGTTTGGTATGTTGAGGGACGTGCAACGCTTTCC
TCCTGACAAAGCGTTTATCATGTTTGATCGGCGGGAGTCTGCACAGCATG
CCTTGTCTTCGGTGGATGCTGTTATGGGCAATCGTCACATTAGGCTTCGA
TGGGCGCGAGAATCTGACTTTGCGGAAGCGGGCCTGCGGTTAACTGACGA
TGGTACTCTTGCGGAGGATGAGCAAGGGAAGAAACATGCTCGGGAAGAAG
AGCATGTAACTCCGACTACACCGCCGAGGTTGGAGTCTAGGGCCACACCT
CCGGATCATAGGGCACGGTTTGATGTGGAAAAAGAGAAGAAAATTAGGGA
GGCAGCCGAGGAGAAAGAACGCAAAATGAAGGAGGCCGAGGAAGATCTTC
GCCGCAAGAAGGAGCAAATTGCCGAATTACGACGTCAGCAAGATGAGCGT
ATTGCACAGCTCACAGCGCGGAAGCAACAGCTTTTGGCTCGTCAGCATGA
AATCTTTGCTAAGATACCGAATGCGAGCGACGAGGAGAAGTTGAAGATGA
AGAATGAGTTGGCTGCAATTCAGGAGGAGACATTAGCGGTGCAACAAGAG
TTGAAGCCCAAGCCACTGGCAGCGCCTAAACCAGAAGCAATGAAGCGGTT
TGCTCCGGCCGCCAGTGCCTACAGAGTGGATAACCGACCCAAACAGATAC
TTGTGAGAGGAGCCAAAAATGATGTCTTGCCTGATGGCGCTGCATCTGCG
TTCCATGATACAGAACGTGCGGAGCACTTTGGCAAGAGCGAATGGCTCTT
GACGTTTCTGAGTAGACGGGCTGCTGAATCTGCAATGCGGGCGCAGAAGG
TGTTGAAGAGATCTTTTGGACCGGAAGCAACTGCCATCATAGTAAGCCCA
GCGATGCTCGAAACGATCAAACAGAATTCCGGGGTTCACACAAACGCAGC
AATTCATCCCTCTCCGCCTGATGTGAAGACAGACGTGAGCATGATGGATG
ACAGCGTGAAAGCCCGTAGCGCTTCAGCTGTGGCAGAATGA

protein sequence of Ggra5922.t1

>Ggra5922.t1 ID=Ggra5922.t1|Name=Ggra5922.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=747bp
MAASARAWSVAKLRELNFEGDAEALGQYIDAVIENNRDAENGDPELLRAQ
VTRDLHDFLADSAAATFVDALMRHLSPNAAAAAPSTPAATAARPSAAANS
ASANIAQQSHARPSHVDEKLRQPLSESRRRSPRRDRVEKGRVENERAEPA
QRRPDRHERRPSRQTVMARLGDRAEDPREQHKRQRPRDPKPSRDPREARQ
QPRAARDRERERDRQNAVARGMRSMSGDVWDRLGPRNVKRPRDEPMDMRE
RRDSDERDAKHRRGTDGGRRRSDNFDRQRPADDRSRRDDRPGRIAASAFE
QNGKAPPPWPHNIVAAQMGLLPPPPFHGMIPPPPHLLPNMGAGGTGGGGG
GGRGRGGFRGRESSRPLPQNGVSNPSNSKYKHFILLVMHIPDDRMMMGPI
YAFFQRFGMLRDVQRFPPDKAFIMFDRRESAQHALSSVDAVMGNRHIRLR
WARESDFAEAGLRLTDDGTLAEDEQGKKHAREEEHVTPTTPPRLESRATP
PDHRARFDVEKEKKIREAAEEKERKMKEAEEDLRRKKEQIAELRRQQDER
IAQLTARKQQLLARQHEIFAKIPNASDEEKLKMKNELAAIQEETLAVQQE
LKPKPLAAPKPEAMKRFAPAASAYRVDNRPKQILVRGAKNDVLPDGAASA
FHDTERAEHFGKSEWLLTFLSRRAAESAMRAQKVLKRSFGPEATAIIVSP
AMLETIKQNSGVHTNAAIHPSPPDVKTDVSMMDDSVKARSASAVAE*

mRNA from alignment at tig00000068_pilon:542807..545047+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra5922.t1 ID=Ggra5922.t1|Name=Ggra5922.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2241bp|location=Sequence derived from alignment at tig00000068_pilon:542807..545047+ (Gracilaria gracilis GNS1m male)
ATGGCCGCTTCTGCGCGTGCTTGGTCCGTCGCAAAGCTCAGGGAGCTCAA
CTTTGAGGGTGATGCCGAGGCACTTGGGCAGTACATCGACGCCGTCATTG
AAAACAATCGCGACGCCGAGAATGGAGACCCGGAGCTTCTCCGCGCACAA
GTCACGCGCGACCTTCATGATTTTCTCGCCGACTCCGCCGCCGCCACTTT
TGTAGATGCTCTCATGCGACATCTTTCACCAAAcgccgccgccgccgccc
ccagcacacccgctgccaccgccgcgcgaccttctgccgctgccAACTCT
GCGTCGGCCAACATTGCGCAACAGTCACACGCGAGACCCTCGCACGTTGA
TGAGAAGCTGCGACAACCGCTGTCTGAATCGCGTCGCCGTTCACCGCGGA
GAGATCGCGTCGAGAAGGGCCGCGTGGAGAACGAGCGAGCCGAACCCGCA
CAACGACGCCCTGATCGTCACGAAAGACGCCCGTCAAGACAGACCGTCAT
GGCGCGTTTGGGCGACCGTGCCGAGGATCCTAGGGAACAGCACAAGCGTC
AACGTCCGCGCGACCCGAAACCGTCGCGCGATCCGCGTGAAGCGCGACAG
CAACCGCGCGCTGCCCGCGATCGGGAGCGTGAGCGCGATCGACAGAACGC
CGTCGCGCGTGGTATGCGTTCCATGTCGGGCGATGTGTGGGATCGCTTGG
GGCCGCGCAACGTCAAAAGACCGCGCGATGAGCCTATGGACATGCGTGAA
CGTCGCGACTCGGATGAACGAGATGCGAAGCATCGACGTGGCACCGATGG
CGGTCGGCGTAGAAGTGATAACTTTGATCGACAGCGTCCTGCGGATGATC
GGTCGAGACGAGATGATCGCCCAGGGCGTATCGCTGCTTCCGCCTTCGAG
CAAAATGGGAAGGCACCCCCACCTTGGCCGCACAATATTGTTGCTGCCCA
GATGGGTCTCTTACCCCCGCCACCTTTCCATGGCATGATTCCGCCGCCAC
CGCACCTATTACCGAACATGGGTGCTggaggaacaggagggggaggaggt
ggtggtcgaggGCGGGGTGGATTCCGAGGGCGCGAATCGAGCAGACCCTT
GCCGCAGAACGGCGTCAGCAATCCATCCAACTCAAAGTACAAACACTTCA
TTCTTCTTGTCATGCACATTCCAGACGATAGGATGATGATGGGACCTATT
TACGCGTTCTTTCAACGGTTTGGTATGTTGAGGGACGTGCAACGCTTTCC
TCCTGACAAAGCGTTTATCATGTTTGATCGGCGGGAGTCTGCACAGCATG
CCTTGTCTTCGGTGGATGCTGTTATGGGCAATCGTCACATTAGGCTTCGA
TGGGCGCGAGAATCTGACTTTGCGGAAGCGGGCCTGCGGTTAACTGACGA
TGGTACTCTTGCGGAGGATGAGCAAGGGAAGAAACATGCTCGGGAAGAAG
AGCATGTAACTCCGACTACACCGCCGAGGTTGGAGTCTAGGGCCACACCT
CCGGATCATAGGGCACGGTTTGATGTGGAAAAAGAGAAGAAAATTAGGGA
GGCAGCCGAGGAGAAAGAACGCAAAATGAAGGAGGCCGAGGAAGATCTTC
GCCGCAAGAAGGAGCAAATTGCCGAATTACGACGTCAGCAAGATGAGCGT
ATTGCACAGCTCACAGCGCGGAAGCAACAGCTTTTGGCTCGTCAGCATGA
AATCTTTGCTAAGATACCGAATGCGAGCGACGAGGAGAAGTTGAAGATGA
AGAATGAGTTGGCTGCAATTCAGGAGGAGACATTAGCGGTGCAACAAGAG
TTGAAGCCCAAGCCACTGGCAGCGCCTAAACCAGAAGCAATGAAGCGGTT
TGCTCCGGCCGCCAGTGCCTACAGAGTGGATAACCGACCCAAACAGATAC
TTGTGAGAGGAGCCAAAAATGATGTCTTGCCTGATGGCGCTGCATCTGCG
TTCCATGATACAGAACGTGCGGAGCACTTTGGCAAGAGCGAATGGCTCTT
GACGTTTCTGAGTAGACGGGCTGCTGAATCTGCAATGCGGGCGCAGAAGG
TGTTGAAGAGATCTTTTGGACCGGAAGCAACTGCCATCATAGTAAGCCCA
GCGATGCTCGAAACGATCAAACAGAATTCCGGGGTTCACACAAACGCAGC
AATTCATCCCTCTCCGCCTGATGTGAAGACAGACGTGAGCATGATGGATG
ACAGCGTGAAAGCCCGTAGCGCTTCAGCTGTGGCAGAATGA

Coding sequence (CDS) from alignment at tig00000068_pilon:542807..545047+

>Ggra5922.t1 ID=Ggra5922.t1|Name=Ggra5922.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2241bp|location=Sequence derived from alignment at tig00000068_pilon:542807..545047+ (Gracilaria gracilis GNS1m male)
ATGGCCGCTTCTGCGCGTGCTTGGTCCGTCGCAAAGCTCAGGGAGCTCAA
CTTTGAGGGTGATGCCGAGGCACTTGGGCAGTACATCGACGCCGTCATTG
AAAACAATCGCGACGCCGAGAATGGAGACCCGGAGCTTCTCCGCGCACAA
GTCACGCGCGACCTTCATGATTTTCTCGCCGACTCCGCCGCCGCCACTTT
TGTAGATGCTCTCATGCGACATCTTTCACCAAAcgccgccgccgccgccc
ccagcacacccgctgccaccgccgcgcgaccttctgccgctgccAACTCT
GCGTCGGCCAACATTGCGCAACAGTCACACGCGAGACCCTCGCACGTTGA
TGAGAAGCTGCGACAACCGCTGTCTGAATCGCGTCGCCGTTCACCGCGGA
GAGATCGCGTCGAGAAGGGCCGCGTGGAGAACGAGCGAGCCGAACCCGCA
CAACGACGCCCTGATCGTCACGAAAGACGCCCGTCAAGACAGACCGTCAT
GGCGCGTTTGGGCGACCGTGCCGAGGATCCTAGGGAACAGCACAAGCGTC
AACGTCCGCGCGACCCGAAACCGTCGCGCGATCCGCGTGAAGCGCGACAG
CAACCGCGCGCTGCCCGCGATCGGGAGCGTGAGCGCGATCGACAGAACGC
CGTCGCGCGTGGTATGCGTTCCATGTCGGGCGATGTGTGGGATCGCTTGG
GGCCGCGCAACGTCAAAAGACCGCGCGATGAGCCTATGGACATGCGTGAA
CGTCGCGACTCGGATGAACGAGATGCGAAGCATCGACGTGGCACCGATGG
CGGTCGGCGTAGAAGTGATAACTTTGATCGACAGCGTCCTGCGGATGATC
GGTCGAGACGAGATGATCGCCCAGGGCGTATCGCTGCTTCCGCCTTCGAG
CAAAATGGGAAGGCACCCCCACCTTGGCCGCACAATATTGTTGCTGCCCA
GATGGGTCTCTTACCCCCGCCACCTTTCCATGGCATGATTCCGCCGCCAC
CGCACCTATTACCGAACATGGGTGCTggaggaacaggagggggaggaggt
ggtggtcgaggGCGGGGTGGATTCCGAGGGCGCGAATCGAGCAGACCCTT
GCCGCAGAACGGCGTCAGCAATCCATCCAACTCAAAGTACAAACACTTCA
TTCTTCTTGTCATGCACATTCCAGACGATAGGATGATGATGGGACCTATT
TACGCGTTCTTTCAACGGTTTGGTATGTTGAGGGACGTGCAACGCTTTCC
TCCTGACAAAGCGTTTATCATGTTTGATCGGCGGGAGTCTGCACAGCATG
CCTTGTCTTCGGTGGATGCTGTTATGGGCAATCGTCACATTAGGCTTCGA
TGGGCGCGAGAATCTGACTTTGCGGAAGCGGGCCTGCGGTTAACTGACGA
TGGTACTCTTGCGGAGGATGAGCAAGGGAAGAAACATGCTCGGGAAGAAG
AGCATGTAACTCCGACTACACCGCCGAGGTTGGAGTCTAGGGCCACACCT
CCGGATCATAGGGCACGGTTTGATGTGGAAAAAGAGAAGAAAATTAGGGA
GGCAGCCGAGGAGAAAGAACGCAAAATGAAGGAGGCCGAGGAAGATCTTC
GCCGCAAGAAGGAGCAAATTGCCGAATTACGACGTCAGCAAGATGAGCGT
ATTGCACAGCTCACAGCGCGGAAGCAACAGCTTTTGGCTCGTCAGCATGA
AATCTTTGCTAAGATACCGAATGCGAGCGACGAGGAGAAGTTGAAGATGA
AGAATGAGTTGGCTGCAATTCAGGAGGAGACATTAGCGGTGCAACAAGAG
TTGAAGCCCAAGCCACTGGCAGCGCCTAAACCAGAAGCAATGAAGCGGTT
TGCTCCGGCCGCCAGTGCCTACAGAGTGGATAACCGACCCAAACAGATAC
TTGTGAGAGGAGCCAAAAATGATGTCTTGCCTGATGGCGCTGCATCTGCG
TTCCATGATACAGAACGTGCGGAGCACTTTGGCAAGAGCGAATGGCTCTT
GACGTTTCTGAGTAGACGGGCTGCTGAATCTGCAATGCGGGCGCAGAAGG
TGTTGAAGAGATCTTTTGGACCGGAAGCAACTGCCATCATAGTAAGCCCA
GCGATGCTCGAAACGATCAAACAGAATTCCGGGGTTCACACAAACGCAGC
AATTCATCCCTCTCCGCCTGATGTGAAGACAGACGTGAGCATGATGGATG
ACAGCGTGAAAGCCCGTAGCGCTTCAGCTGTGGCAGAATGA