Ggra5909.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5909.t1
Unique NameGgra5909.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Homology
BLAST of Ggra5909.t1 vs. uniprot
Match: A0A2V3INT1 (60S ribosomal protein L6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3INT1_9FLOR)

HSP 1 Score: 353 bits (907), Expect = 3.120e-122
Identity = 176/213 (82.63%), Postives = 195/213 (91.55%), Query Frame = 0
Query:    1 MGLSRDARRRAKEAPTKPVLETVIKKIGGEKNGGERTVIVNKGPKWYPADDVKKPVPSRKHVHKPAKLRSSISPGTVVIMLAGRLRGSRVICLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDISAVDISKFDDAYFKRVKAKSKADVMETDEAEPRYSPTEERIADQKVVDQVLLPIIEKEPMMTSYLKNRFTLKRGMFPHEMNF 213
            MG SRDARRRAKEAPTKPVL+T+ KKIGGEKNGGERTVIVNKGPKWYPADD+KKPVPSRKH HKP KLRSSI PG+V+I+LAGRL+G RVI L QL SG LLVTGPYSVNRIPLRRV+QAYVIATST++D+SAVD+SKFDDAYFKRVKAK  ADVMETDE   +Y+PTEERIADQK VDQVL+P+IEKEP+MTSYLKNRFTL+RGM PH M+F
Sbjct:    1 MGKSRDARRRAKEAPTKPVLQTITKKIGGEKNGGERTVIVNKGPKWYPADDIKKPVPSRKHAHKPPKLRSSIKPGSVLILLAGRLQGCRVIFLKQLKSGMLLVTGPYSVNRIPLRRVNQAYVIATSTSVDVSAVDVSKFDDAYFKRVKAKKNADVMETDEEAAKYAPTEERIADQKAVDQVLVPVIEKEPLMTSYLKNRFTLRRGMNPHVMSF 213          
BLAST of Ggra5909.t1 vs. uniprot
Match: R7QHE3 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHE3_CHOCR)

HSP 1 Score: 260 bits (665), Expect = 4.320e-85
Identity = 126/199 (63.32%), Postives = 159/199 (79.90%), Query Frame = 0
Query:   16 TKPVLETVIKKIGGEKNGGERTVIVNKGPKWYPADDVKKPVPSRKHVHKPAKLRSSISPGTVVIMLAGRLRGSRVICLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDISAVDISKFDDAYFKRVKAKSKADVMETDEAEP-RYSPTEERIADQKVVDQVLLPIIEKEPMMTSYLKNRFTLKRGMFPHEMNF 213
            ++PV++T+ K IGGEKNGG R VI   GPKWYPADDV+ PVPSRKHVHKP KLR+ I+PGT++I+LAG  RGSRV+ L QL SG LLVTGPYSVNRIP++RV+QAYVIATST +++S  D++KFDD YFKR K    + VME DE +  + +PT+E+IADQK +D VL+P IEK P ++SYLK +FTL +G +PHEM F
Sbjct:   36 SEPVVQTITKPIGGEKNGGTREVIKKTGPKWYPADDVRAPVPSRKHVHKPTKLRAGITPGTILILLAGANRGSRVVFLKQLSSGLLLVTGPYSVNRIPIKRVEQAYVIATSTKIEVSGCDVAKFDDEYFKRDKGSKASVVMEVDEGDASKKTPTQEKIADQKAIDAVLVPAIEKVPQLSSYLKVKFTLSKGQYPHEMKF 234          
BLAST of Ggra5909.t1 vs. uniprot
Match: Q7XY83 (Ribosome protein L6 n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY83_GRIJA)

HSP 1 Score: 253 bits (646), Expect = 1.830e-82
Identity = 130/211 (61.61%), Postives = 159/211 (75.36%), Query Frame = 0
Query:    4 SRDARRRAKEAPTKPVLETVIKKIGGEKNGGERTVIVNKGPKWYPADDVKKPVPSRKHVHKPAKLRSSISPGTVVIMLAGRLRGSRVICLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDISAVDISKFDDAYFKRVKAKSKADVMETDEA---EPRYSPTEERIADQKVVDQVLLPIIEKEPMMTSYLKNRFTLKRGMFPHEM 211
            SR+AR RAK+      ++ + K IGG KNGG R V   KGPKWYPADD K PVPSRK+VHKP KLR SI  GT+VI+LAG  RGSRV+ L QL SG+LLVTGPY+VNRIPL RVDQ YVIATST++D+S VD+ K D+AYF++ + K K DVME D A   E +    E RIADQK +D VLLP+IEKEP+++SYLK +F+LK+G +PH M
Sbjct:    4 SRNARTRAKQVVIPEPIKMIKKPIGGAKNGGYRLVPEKKGPKWYPADDKKTPVPSRKNVHKPTKLRPSIKSGTIVILLAGVFRGSRVVVLKQLDSGQLLVTGPYAVNRIPLTRVDQRYVIATSTSIDVSKVDVKKIDNAYFRKPQKKKKTDVMEVDTAKKDEQKTKAIEARIADQKAIDAVLLPVIEKEPLLSSYLKVKFSLKKGQYPHAM 214          
BLAST of Ggra5909.t1 vs. uniprot
Match: A0A7S3A2Q9 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A2Q9_9RHOD)

HSP 1 Score: 232 bits (591), Expect = 4.120e-74
Identity = 121/217 (55.76%), Postives = 158/217 (72.81%), Query Frame = 0
Query:    1 MGLSRDARRRAKEAPTKPVLETVIKKIGGEKNGGERTVIVNKGPKWYPADDVKKPVPSRKHVHKPAKLRSSISPGTVVIMLAGRLRGSRVICLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDISAVDISKFDDAYFKRVKAK----SKADVMETDEAEPRYSPTEERIADQKVVDQVLLPIIEKEPMMTSYLKNRFTLKRGMFPHEMNF 213
            + ++RD RR AKEA   PV   V K IGGEKNGG+R  +V     +YPADDVKKP+PSRKH+HKP KLRSSI+PGT++I+LAG  RG RV+ L QL +G LLVTGPYSVN +PLR+VDQAYVIATST +D+S VD+SKFD  YFK+ K+K    ++ D M  + AE +    E ++ADQK VD  ++  ++KE M+ +YL  RF+L +G +PH+M F
Sbjct:    2 VSMNRDRRRAAKEAAATPVKAAVEKPIGGEKNGGKR--LVQPKAAYYPADDVKKPLPSRKHIHKPTKLRSSITPGTILILLAGNHRGKRVVFLKQLDTGLLLVTGPYSVNGVPLRKVDQAYVIATSTKIDVSGVDVSKFDGKYFKKDKSKKSKKTEEDFMAVEGAEKKSEIPEGKVADQKTVDSAIMTELKKEEMLIAYLGARFSLTKGQYPHKMVF 216          
BLAST of Ggra5909.t1 vs. uniprot
Match: A0A1X6PCS6 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PCS6_PORUM)

HSP 1 Score: 224 bits (571), Expect = 3.680e-71
Identity = 115/204 (56.37%), Postives = 145/204 (71.08%), Query Frame = 0
Query:   10 RAKEAPTKPVLETVIKKIGGEKNGGERTVIVNKGPKWYPADDVKKPVPSRKHVHKPAKLRSSISPGTVVIMLAGRLRGSRVICLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDISAVDISKFDDAYFKRVKAKSKADVMETDEAEPRYSPTEERIADQKVVDQVLLPIIEKEPMMTSYLKNRFTLKRGMFPHEMNF 213
            R K    +    T+ KKIGG+KNGGERT+    G KWY AD+VK PV SRKHVHKP KLR+S+ PG V+I+L+GR R  RV+ LG LPSG LLVTGPY++N +P+RRVD AYVIATST +D+S VD+SK+DDAYFKR K  S  DV + +E+  R  P E +IADQK VD  L+  I+K+ ++  YL + FTL  G  PHE+ F
Sbjct:    9 RVKRKAAQETTTTITKKIGGDKNGGERTITKTVGSKWYNADNVKTPVASRKHVHKPRKLRASLKPGAVLILLSGRHRAKRVVMLGSLPSGLLLVTGPYAINGVPMRRVDAAYVIATSTIVDVSGVDVSKYDDAYFKRTKKPSGVDV-DMEESAKRPVP-EHKIADQKAVDAALIAEIKKDSLLKPYLSSLFTLTDGQAPHELKF 210          
BLAST of Ggra5909.t1 vs. uniprot
Match: A0A397IYP9 (60S ribosomal protein L6 n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397IYP9_9GLOM)

HSP 1 Score: 196 bits (498), Expect = 1.130e-59
Identity = 108/212 (50.94%), Postives = 146/212 (68.87%), Query Frame = 0
Query:    8 RRRAKEAPTKPVLETV-IKKIGGEKNGGERTVIVNKGPKWYPADDVKKPVPSRKHVHKPAKLRSSISPGTVVIMLAGRLRGSRVICLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDIS-AVDISKFDDAYFKRVKAKSKADVMET----DEAEPRYSPTEERIADQKVVDQVLLPIIEKEPMMTSYLKNRFTLKRGMFPHEMNF 213
            R++A+   T+  +ET   K IGGEKNG ER + + K P++YPA+D+ +P  SRK V+KP KLR +I+PGT++I++AGR RG RV+ L QL SG LLVTGP+ +N +PLRRV+QAYVIATST +DIS A  + KFDDAYFK+ K   K  V E     DE + +    E R +DQK VD+ +  +I+K P +  YL +RF+L RG FPH + F
Sbjct:   31 RKKAQVPKTEAKVETTKTKPIGGEKNGKERLIPLEKAPRFYPAEDIPRPKKSRK-VNKPTKLRPTITPGTILILVAGRYRGKRVVFLKQLASGLLLVTGPFRINGVPLRRVNQAYVIATSTKVDISTACPLDKFDDAYFKKAKESKKRKVTEKEFFEDEQKKKKPLPETRASDQKEVDKNITAVIKKTPHLRDYLHSRFSLSRGQFPHNLEF 241          
BLAST of Ggra5909.t1 vs. uniprot
Match: A0A1Y1ZCC3 (Ribosomal_L6e_N domain-containing protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1ZCC3_9FUNG)

HSP 1 Score: 194 bits (493), Expect = 6.060e-59
Identity = 106/206 (51.46%), Postives = 139/206 (67.48%), Query Frame = 0
Query:   11 AKEAPTKPVLETVIKKIGGEKNGGERTVIVNKGPKWYPADDVKKPVPSRKHVHKPAKLRSSISPGTVVIMLAGRLRGSRVICLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDISAVDIS-KFDDAYFKRVKAKSKADVMET--DEAEPRYSPTEERIADQKVVDQVLLPIIEKEPMMTSYLKNRFTLKRGMFPHEMNF 213
            AK     P  +TV  ++ G+KNG ER V +NK  +WYPA+D+ +P  SRK   KP KLR++I+PGTV+++LAGR RG RV+ L QL SG LLVTGPY VN +PLRRV+QAYV+ATST +D+S V +  KFDDAYFK+ K        E   DE +P+   +E R ADQKVVD+ +L  + + P + SYL   FTL++G  PH M F
Sbjct:   37 AKNDTAAPTTKTV--QVNGDKNGKERVVALNKASRWYPAEDIAQPKVSRKTA-KPTKLRATITPGTVLVLLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVLATSTKVDLSNVKVDEKFDDAYFKKEKTSKAGKTEEEFFDEKQPKKVISESRSADQKVVDKEILAAVAQVPHLRSYLNASFTLRKGQAPHAMKF 239          
BLAST of Ggra5909.t1 vs. uniprot
Match: A0A1Y1Y1J0 (60S ribosomal protein L6 n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y1J0_9FUNG)

HSP 1 Score: 194 bits (492), Expect = 8.330e-59
Identity = 107/206 (51.94%), Postives = 140/206 (67.96%), Query Frame = 0
Query:   11 AKEAPTKPVLETVIKKIGGEKNGGERTVIVNKGPKWYPADDVKKPVPSRKHVHKPAKLRSSISPGTVVIMLAGRLRGSRVICLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDISAVDIS-KFDDAYFKRVKAK--SKADVMETDEAEPRYSPTEERIADQKVVDQVLLPIIEKEPMMTSYLKNRFTLKRGMFPHEMNF 213
            A++A   P     ++ + GEKNG ER V +NK  +WYPA+DV +P  SRK   KP KLR+SI+PGTV+++LAGR RG RV+ L QL SG LLVTGPY VN +PLRRV+QAYVIATST +D+S V +  KFDDAYFK+ K    SK +    DE +P+ + +E R ADQK VD+ +L  +   P + +YL   FTL++G  PH M F
Sbjct:   35 AEKAAAAPATTKTVQ-VNGEKNGKERVVALNKASRWYPAEDVAQPKQSRKTA-KPTKLRTSITPGTVLVLLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVIATSTKVDLSNVKVDEKFDDAYFKKEKTAKASKTEEEFFDEKQPKKTISESRSADQKSVDKEILAAVSGVPHLRAYLNASFTLRKGQAPHAMKF 238          
BLAST of Ggra5909.t1 vs. uniprot
Match: A0A1Y1Y938 (Ribosomal_L6e_N domain-containing protein n=2 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y938_9FUNG)

HSP 1 Score: 193 bits (490), Expect = 1.670e-58
Identity = 107/207 (51.69%), Postives = 142/207 (68.60%), Query Frame = 0
Query:   11 AKEAPTKPVLETVIKKIGGEKNGGERTVIVNKGPKWYPADDVKKPVPSRKHVHKPAKLRSSISPGTVVIMLAGRLRGSRVICLGQLPSGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDISAVDI-SKFDDAYFKR---VKAKSKADVMETDEAEPRYSPTEERIADQKVVDQVLLPIIEKEPMMTSYLKNRFTLKRGMFPHEMNF 213
            A++A   P     +K + GEKNG ER V +NK  +WYPA+DV +P  SRK V KP KLR++I+PGTV+++LAGR RG RV+ L QL SG LLVTGPY VN +PLRRV+QAYV+ATST +D+S V++ +KFDDAYFK+    KAK   +    +E + +  P E R ADQK VD+ +L  + + P + SYL   FTL++G  PH M F
Sbjct:   35 AEKAAAAPATTKTVK-VNGEKNGSERVVSLNKASRWYPAEDVAQPKASRK-VAKPTKLRATITPGTVLVLLAGRFRGKRVVFLKQLASGLLLVTGPYKVNGVPLRRVNQAYVLATSTKVDLSNVNVDAKFDDAYFKKEKAAKAKGTEEEFFGEEQKKKVIP-ESRSADQKSVDKEILAAVSQVPHLRSYLNASFTLRKGQAPHSMKF 238          
BLAST of Ggra5909.t1 vs. uniprot
Match: T2MEN3 (60S ribosomal protein L6 n=2 Tax=Hydra vulgaris TaxID=6087 RepID=T2MEN3_HYDVU)

HSP 1 Score: 194 bits (492), Expect = 2.850e-58
Identity = 104/189 (55.03%), Postives = 142/189 (75.13%), Query Frame = 0
Query:   24 IKKIGGEKNGGERTVIVNKGPKWYPADDVKKPVPSRKHVHKPAKLRSSISPGTVVIMLAGRLRGSRVICLGQLP-SGKLLVTGPYSVNRIPLRRVDQAYVIATSTALDISAVDISK-FDDAYFKRVK---AKSKADVMETDEAEPRYSPTEERIADQKVVDQVLLPIIEKEPMMTSYLKNRFTLKRGMF 207
            +KK+GGEKNGG+RT+ + K P++YP DDVK+P+  RKH  KP KLRSS++PGTVVI+LAGR +G RV+ L QLP SG LLVTGP+++N +PLRRV Q+YV+AT T +DIS V +SK   D +FKR K   A+SK  +   DE+   Y P+EER + QK VD+ LLP+I+  P++T Y+K+ FTL++G +
Sbjct:   50 VKKVGGEKNGGQRTLPLVKQPRFYPVDDVKRPLKXRKHP-KPPKLRSSLTPGTVVILLAGRHKGKRVVFLKQLPTSGLLLVTGPFTINGVPLRRVPQSYVLATKTKIDISKVKLSKQLTDDFFKRQKKKVARSKESMF--DESAEGYKPSEERKSSQKEVDEALLPLIKPVPLLTKYMKSLFTLRKGQW 235          
The following BLAST results are available for this feature:
BLAST of Ggra5909.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3INT13.120e-12282.6360S ribosomal protein L6 n=1 Tax=Gracilariopsis ch... [more]
R7QHE34.320e-8563.32Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
Q7XY831.830e-8261.61Ribosome protein L6 n=1 Tax=Griffithsia japonica T... [more]
A0A7S3A2Q94.120e-7455.76Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A1X6PCS63.680e-7156.37Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A397IYP91.130e-5950.9460S ribosomal protein L6 n=1 Tax=Diversispora epig... [more]
A0A1Y1ZCC36.060e-5951.46Ribosomal_L6e_N domain-containing protein n=2 Tax=... [more]
A0A1Y1Y1J08.330e-5951.9460S ribosomal protein L6 n=1 Tax=Basidiobolus meri... [more]
A0A1Y1Y9381.670e-5851.69Ribosomal_L6e_N domain-containing protein n=2 Tax=... [more]
T2MEN32.850e-5855.0360S ribosomal protein L6 n=2 Tax=Hydra vulgaris Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014722Ribosomal protein L2, domain 2GENE3D2.30.30.30coord: 70..154
e-value: 9.8E-10
score: 40.3
IPR00091560S ribosomal protein L6EPFAMPF01159Ribosomal_L6ecoord: 109..213
e-value: 1.1E-32
score: 112.9
IPR00091560S ribosomal protein L6EPANTHERPTHR1071560S RIBOSOMAL PROTEIN L6coord: 17..213
NoneNo IPR availablePANTHERPTHR10715:SF060S RIBOSOMAL PROTEIN L6coord: 17..213
IPR041997Ribosomal Protein L6, KOW domainCDDcd13156KOW_RPL6coord: 64..213
e-value: 2.95536E-80
score: 234.75
IPR008991Translation protein SH3-like domain superfamilySUPERFAMILY50104Translation proteins SH3-like domaincoord: 70..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:492015..492842 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5909.t1Ggra5909.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 492015..492842 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5909.t1 ID=Ggra5909.t1|Name=Ggra5909.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MGLSRDARRRAKEAPTKPVLETVIKKIGGEKNGGERTVIVNKGPKWYPAD
DVKKPVPSRKHVHKPAKLRSSISPGTVVIMLAGRLRGSRVICLGQLPSGK
LLVTGPYSVNRIPLRRVDQAYVIATSTALDISAVDISKFDDAYFKRVKAK
SKADVMETDEAEPRYSPTEERIADQKVVDQVLLPIIEKEPMMTSYLKNRF
TLKRGMFPHEMNF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014722Rib_L2_dom2
IPR00091560S_ribosomal_L6E
IPR041997KOW_RPL6
IPR008991Translation_prot_SH3-like_sf