Ggra5909.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5909.t1
Unique NameGgra5909.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:492015..492842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6087.XP_002164071.1
Preferred nameRPL6
PFAMsRibosomal_L6e,Ribosomal_L6e_N
Max annot lvl33208|Metazoa
KEGG koko:K02934
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000027,GO:0000049,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009987,GO:0010259,GO:0010467,GO:0010468,GO:0010556,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030867,GO:0031090,GO:0031323,GO:0031326,GO:0031672,GO:0031974,GO:0031981,GO:0031984,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0035770,GO:0036464,GO:0042175,GO:0042254,GO:0042255,GO:0042273,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048856,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051641,GO:0051649,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903506,GO:1990904,GO:1990932,GO:2000112,GO:2001141
Evalue1.06e-62
EggNOG OGsCOG2163@1|root,KOG1694@2759|Eukaryota,39HUD@33154|Opisthokonta,3BGDM@33208|Metazoa
Description60s ribosomal protein
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5909Ggra5909Gracilaria gracilis GNS1m malegenetig00000068_pilon 492015..492842 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5909.t1Ggra5909.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 492015..492842 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5909.t1.stop1Ggra5909.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 492015..492017 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5909.t1.CDS1Ggra5909.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 492015..492614 -
Ggra5909.t1.CDS2Ggra5909.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000068_pilon 492801..492842 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5909.t1.exon1Ggra5909.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 492015..492614 -
Ggra5909.t1.exon2Ggra5909.t1.exon2Gracilaria gracilis GNS1m maleexontig00000068_pilon 492801..492842 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5909.t1.intron1Ggra5909.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000068_pilon 492615..492800 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5909.t1.start1Ggra5909.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 492840..492842 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5909.t1 ID=Ggra5909.t1|Name=Ggra5909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=214bp
MGLSRDARRRAKEAPTKPVLETVIKKIGGEKNGGERTVIVNKGPKWYPAD
DVKKPVPSRKHVHKPAKLRSSISPGTVVIMLAGRLRGSRVICLGQLPSGK
LLVTGPYSVNRIPLRRVDQAYVIATSTALDISAVDISKFDDAYFKRVKAK
SKADVMETDEAEPRYSPTEERIADQKVVDQVLLPIIEKEPMMTSYLKNRF
TLKRGMFPHEMNF*
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spliced messenger RNA

>Ggra5909.t1 ID=Ggra5909.t1|Name=Ggra5909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=642bp|location=Sequence derived from alignment at tig00000068_pilon:492015..492842- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGACTGAGCAGGGACGCTAGAAGGCGTGCTAAGGAAGCGCCAACCAA
GCCAGTTCTTGAAACTGTTATAAAGAAGATTGGTGGCGAAAAGAACGGCG
GCGAACGAACGGTTATTGTCAACAAGGGTCCCAAATGGTACCCAGCAGAT
GACGTCAAGAAGCCGGTTCCCAGCCGCAAGCATGTTCATAAGCCGGCTAA
ATTGCGCTCGTCCATCTCACCGGGCACAGTGGTCATCATGTTGGCCGGTC
GCCTTCGTGGAAGCCGCGTCATTTGCTTGGGACAGCTGCCATCAGGTAAG
CTTCTTGTCACCGGCCCGTACTCCGTCAATCGAATCCCTCTTCGCCGTGT
CGATCAAGCCTATGTTATTGCCACCAGCACTGCTCTTGATATTAGTGCTG
TTGATATTTCCAAGTTTGATGATGCCTACTTCAAGCGTGTGAAAGCGAAG
AGCAAGGCTGATGTCATGGAGACTGATGAGGCAGAGCCCAGGTATTCTCC
GACAGAAGAGAGGATTGCGGATCAGAAGGTTGTTGATCAAGTACTGCTCC
CTATCATTGAGAAAGAGCCCATGATGACTAGCTACCTCAAAAACAGATTC
ACGCTGAAGAGGGGCATGTTCCCACATGAAATGAACTTCTAG
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protein sequence of Ggra5909.t1

>Ggra5909.t1 ID=Ggra5909.t1|Name=Ggra5909.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=214bp
MGLSRDARRRAKEAPTKPVLETVIKKIGGEKNGGERTVIVNKGPKWYPAD
DVKKPVPSRKHVHKPAKLRSSISPGTVVIMLAGRLRGSRVICLGQLPSGK
LLVTGPYSVNRIPLRRVDQAYVIATSTALDISAVDISKFDDAYFKRVKAK
SKADVMETDEAEPRYSPTEERIADQKVVDQVLLPIIEKEPMMTSYLKNRF
TLKRGMFPHEMNF*
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mRNA from alignment at tig00000068_pilon:492015..492842-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5909.t1 ID=Ggra5909.t1|Name=Ggra5909.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=828bp|location=Sequence derived from alignment at tig00000068_pilon:492015..492842- (Gracilaria gracilis GNS1m male)
ATGGGACTGAGCAGGGACGCTAGAAGGCGTGCTAAGGAAGCGGTTCGTTT
AGTGCATTCCACGCGTTCATCGTCGACCATGGATCTACGTTTCATGTCCA
ATGGTGTGAATCGCGACCCCTTCTCCGTCGTGACCCGGTTTACCGACAGC
TGATCCCATTCTTTCGTGCGATTTTTCGATACTAACACGCCTTTGTTTTG
TCGTCCTATGGTGTTAAACCGTTTGCAGCCAACCAAGCCAGTTCTTGAAA
CTGTTATAAAGAAGATTGGTGGCGAAAAGAACGGCGGCGAACGAACGGTT
ATTGTCAACAAGGGTCCCAAATGGTACCCAGCAGATGACGTCAAGAAGCC
GGTTCCCAGCCGCAAGCATGTTCATAAGCCGGCTAAATTGCGCTCGTCCA
TCTCACCGGGCACAGTGGTCATCATGTTGGCCGGTCGCCTTCGTGGAAGC
CGCGTCATTTGCTTGGGACAGCTGCCATCAGGTAAGCTTCTTGTCACCGG
CCCGTACTCCGTCAATCGAATCCCTCTTCGCCGTGTCGATCAAGCCTATG
TTATTGCCACCAGCACTGCTCTTGATATTAGTGCTGTTGATATTTCCAAG
TTTGATGATGCCTACTTCAAGCGTGTGAAAGCGAAGAGCAAGGCTGATGT
CATGGAGACTGATGAGGCAGAGCCCAGGTATTCTCCGACAGAAGAGAGGA
TTGCGGATCAGAAGGTTGTTGATCAAGTACTGCTCCCTATCATTGAGAAA
GAGCCCATGATGACTAGCTACCTCAAAAACAGATTCACGCTGAAGAGGGG
CATGTTCCCACATGAAATGAACTTCTAG
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Coding sequence (CDS) from alignment at tig00000068_pilon:492015..492842-

>Ggra5909.t1 ID=Ggra5909.t1|Name=Ggra5909.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=642bp|location=Sequence derived from alignment at tig00000068_pilon:492015..492842- (Gracilaria gracilis GNS1m male)
ATGGGACTGAGCAGGGACGCTAGAAGGCGTGCTAAGGAAGCGCCAACCAA
GCCAGTTCTTGAAACTGTTATAAAGAAGATTGGTGGCGAAAAGAACGGCG
GCGAACGAACGGTTATTGTCAACAAGGGTCCCAAATGGTACCCAGCAGAT
GACGTCAAGAAGCCGGTTCCCAGCCGCAAGCATGTTCATAAGCCGGCTAA
ATTGCGCTCGTCCATCTCACCGGGCACAGTGGTCATCATGTTGGCCGGTC
GCCTTCGTGGAAGCCGCGTCATTTGCTTGGGACAGCTGCCATCAGGTAAG
CTTCTTGTCACCGGCCCGTACTCCGTCAATCGAATCCCTCTTCGCCGTGT
CGATCAAGCCTATGTTATTGCCACCAGCACTGCTCTTGATATTAGTGCTG
TTGATATTTCCAAGTTTGATGATGCCTACTTCAAGCGTGTGAAAGCGAAG
AGCAAGGCTGATGTCATGGAGACTGATGAGGCAGAGCCCAGGTATTCTCC
GACAGAAGAGAGGATTGCGGATCAGAAGGTTGTTGATCAAGTACTGCTCC
CTATCATTGAGAAAGAGCCCATGATGACTAGCTACCTCAAAAACAGATTC
ACGCTGAAGAGGGGCATGTTCCCACATGAAATGAACTTCTAG
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