Ggra5896.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5896.t1
Unique NameGgra5896.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length310
Homology
BLAST of Ggra5896.t1 vs. uniprot
Match: A0A2V3IYS9 (PHD-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYS9_9FLOR)

HSP 1 Score: 172 bits (437), Expect = 3.870e-48
Identity = 82/144 (56.94%), Postives = 104/144 (72.22%), Query Frame = 0
Query:    6 AAPQLVMYDDFLIEAYCSIAFVPFASVSEQRGSAHKSADHERQDELYGRCRICCSSSRSSEPMLLCDSCDRAFHQECVHPRLKELPKGEWHCSKCTSAALYNLHTRAATVSNLRNVLRDMHIFPTLPLKLRFKMLDLFASARAP 149
            A PQ+V+ D F++EAY  +  VPFA+V EQRGSA K+++HER+D LYGRCRIC ++ R  E +LLCD CDRAFH  C+HP LK++PKG+WHC  C S A +  H+RA  V+NLR VL D+   PTLPLKLR K+L L A    P
Sbjct:    8 ARPQVVVLDGFVVEAYARMEHVPFATVREQRGSAPKTSEHERRDGLYGRCRICVATKRG-EQLLLCDGCDRAFHMTCLHPPLKDVPKGDWHCPDCVSRAAFFRHSRATAVANLRAVLHDISSRPTLPLKLRLKLLHLSAPESPP 150          
BLAST of Ggra5896.t1 vs. uniprot
Match: A0A813KAT4 (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KAT4_POLGL)

HSP 1 Score: 60.5 bits (145), Expect = 5.340e-8
Identity = 22/47 (46.81%), Postives = 32/47 (68.09%), Query Frame = 0
Query:   55 CRICCSSSRSSEPMLLCDSCDRAFHQECVHPRLKELPKGEWHCSKCT 101
            C +C  SS     ++LCDSCD A+H  C+HP L+E+P  +WHC +C+
Sbjct:    9 CEVC-GSSHDDSLLMLCDSCDDAYHTFCLHPALQEVPSDDWHCPRCS 54          
BLAST of Ggra5896.t1 vs. uniprot
Match: A0A024GGU2 (PHD-type domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GGU2_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 7.260e-8
Identity = 29/62 (46.77%), Postives = 38/62 (61.29%), Query Frame = 0
Query:   43 ADHERQDELYGRCRICCSSSRSSEPMLLCDSCDRAFHQECVHPRLKELPKGEWHCSKCTSAA 104
            A+ E  DE    CR+C      S+ MLLCDSCD+A+H  C+HP L ++P G+W C KC   A
Sbjct:  134 AEKEYDDE---ECRVCHFDGNESQ-MLLCDSCDQAYHLYCLHPPLDQIPDGDWFCPKCIQEA 191          
BLAST of Ggra5896.t1 vs. uniprot
Match: A0A261XY56 (Uncharacterized protein n=1 Tax=Bifiguratus adelaidae TaxID=1938954 RepID=A0A261XY56_9FUNG)

HSP 1 Score: 63.9 bits (154), Expect = 1.280e-7
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 0
Query:   49 DELYGRCRICCSSSRSSEPMLLCDSCDRAFHQECVHPRLKELPKGEWHCSKCTSAALYNLHTRA 112
            D L   C +C S+ R  E MLLCDSCDR FH +CVH  L  +P+G+W C  C   A  ++ +R+
Sbjct:  106 DGLTTSCEVCGSADREDE-MLLCDSCDRGFHLDCVH--LSHIPEGDWFCPDCADTASQDVESRS 166          
BLAST of Ggra5896.t1 vs. uniprot
Match: A0A1X2H7C3 (PLU-1-like protein-domain-containing protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H7C3_SYNRA)

HSP 1 Score: 63.5 bits (153), Expect = 1.850e-7
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0
Query:   53 GRCRICCSSSRSSEPMLLCDSCDRAFHQECVHPRLKELPKGEWHCSKCTSAA 104
            G C  C +SS   + MLLCDSCDRA+H  C+ P L ++P+ +W+C KC +AA
Sbjct:  248 GACETC-NSSADEDQMLLCDSCDRAYHLHCLDPPLAKVPESDWYCLKCLTAA 298          
BLAST of Ggra5896.t1 vs. uniprot
Match: A0A8H7PHW0 (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PHW0_MORIS)

HSP 1 Score: 63.2 bits (152), Expect = 2.490e-7
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 0
Query:   41 KSADHERQDELYGRCRIC--CSSSRSSEPMLLCDSCDRAFHQECVHPRLKELPKGEWHCSKCTSAA 104
            K  D  R     GR  IC  C+   + + +LLCD CDR +H  C+ P L  +P+ EW+C KC +AA
Sbjct:  238 KDDDRSRDSSSPGRGEICEICNVGENEDEILLCDGCDRGYHMYCLDPPLSSIPRTEWYCVKCLTAA 303          
BLAST of Ggra5896.t1 vs. uniprot
Match: A0A8H7VFK6 (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7VFK6_9FUNG)

HSP 1 Score: 62.8 bits (151), Expect = 3.330e-7
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 0
Query:   32 VSEQRGSAHKSADHERQDELYGRCRIC--CSSSRSSEPMLLCDSCDRAFHQECVHPRLKELPKGEWHCSKCTSAA 104
            V  +R  + K A+ E  +      + C  C+S  + E +LLCD CDR +H  C+ P L  +PK +W+C KC +AA
Sbjct:  230 VGMRRQPSDKEAEQEEAESPGNGGQACEICNSGENEEEILLCDGCDRGYHMYCLSPPLNTVPKSDWYCFKCLTAA 304          
BLAST of Ggra5896.t1 vs. uniprot
Match: A0A4Y2U8A5 (PHD-type domain-containing protein n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2U8A5_ARAVE)

HSP 1 Score: 58.2 bits (139), Expect = 8.210e-7
Identity = 23/58 (39.66%), Postives = 35/58 (60.34%), Query Frame = 0
Query:   46 ERQDELYG---RCRICCSSSRSSEPMLLCDSCDRAFHQECVHPRLKELPKGEWHCSKC 100
            +R  +LY     C +C      ++ +LLCDSCD A+H +C++P LK +P+G W C  C
Sbjct:   39 KRSLDLYDISVHCEVCKDVKERNDTVLLCDSCDLAYHLDCLNPPLKSIPRGNWFCPDC 96          
BLAST of Ggra5896.t1 vs. uniprot
Match: A0A0L6UHH2 (Uncharacterized protein n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6UHH2_9BASI)

HSP 1 Score: 61.2 bits (147), Expect = 1.030e-6
Identity = 26/74 (35.14%), Postives = 40/74 (54.05%), Query Frame = 0
Query:   29 FASVSEQRGSAHKSADHERQDELYGRCRIC--CSSSRSSEPMLLCDSCDRAFHQECVHPRLKELPKGEWHCSKC 100
            FA    +  ++H+S  H++   +     IC  C S      +LLCDSCD+ FH +C+ P L  +P+G W+C  C
Sbjct:  293 FAPPVRRPSTSHRSTPHDQDTSMDNGGDICEICGSDEDDPNILLCDSCDKGFHLQCLTPPLLAVPEGNWYCDTC 366          
BLAST of Ggra5896.t1 vs. uniprot
Match: A0A068S534 (Phd transcription factor n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068S534_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 1.040e-6
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 0
Query:   55 CRICCSSSRSSEPMLLCDSCDRAFHQECVHPRLKELPKGEWHCSKCTSAA 104
            C IC ++    E MLLCD CDR +H  C++P L  +PK +W+C KC +AA
Sbjct:  254 CEICHTAEEEDE-MLLCDGCDRGYHMHCLNPPLNNVPKADWYCVKCLTAA 302          
The following BLAST results are available for this feature:
BLAST of Ggra5896.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IYS93.870e-4856.94PHD-type domain-containing protein n=1 Tax=Gracila... [more]
A0A813KAT45.340e-846.81Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A024GGU27.260e-846.77PHD-type domain-containing protein n=1 Tax=Albugo ... [more]
A0A261XY561.280e-745.31Uncharacterized protein n=1 Tax=Bifiguratus adelai... [more]
A0A1X2H7C31.850e-750.00PLU-1-like protein-domain-containing protein n=1 T... [more]
A0A8H7PHW02.490e-740.91Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A8H7VFK63.330e-737.33Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A4Y2U8A58.210e-739.66PHD-type domain-containing protein n=1 Tax=Araneus... [more]
A0A0L6UHH21.030e-635.14Uncharacterized protein n=1 Tax=Puccinia sorghi Ta... [more]
A0A068S5341.040e-648.00Phd transcription factor n=2 Tax=Lichtheimia TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 54..101
e-value: 9.8E-11
score: 51.7
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 16..110
e-value: 2.0E-17
score: 65.3
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 54..102
e-value: 2.3E-11
score: 43.4
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 52..103
score: 10.6737
NoneNo IPR availablePANTHERPTHR10615HISTONE ACETYLTRANSFERASEcoord: 32..104
NoneNo IPR availablePANTHERPTHR10615:SF127REMODELING AND SPACING FACTOR 1coord: 32..104
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 55..100
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 47..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:447608..448537 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5896.t1Ggra5896.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 447608..448537 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5896.t1 ID=Ggra5896.t1|Name=Ggra5896.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=310bp
MAAPLAAPQLVMYDDFLIEAYCSIAFVPFASVSEQRGSAHKSADHERQDE
LYGRCRICCSSSRSSEPMLLCDSCDRAFHQECVHPRLKELPKGEWHCSKC
TSAALYNLHTRAATVSNLRNVLRDMHIFPTLPLKLRFKMLDLFASARAPR
VAAPAPAVCAPSSRAPSSRAPFKSLPPKLRSKRRRSWSAPAQAQRAPCAV
ANADAPALSAALLAAPARSVVRLARHLQPVAQLLSNHQALHALCVLEAHF
SAQRAARCGRTVKGAPRLTVADGGAQGAARVRASHPSPNRLAPPLQAAES
LVTPAAIYK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD