Ggra5896.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5896.t1
Unique NameGgra5896.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length310
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:447608..448537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_04353T0
PFAMsPHD,POX
Max annot lvl2759|Eukaryota
KEGG koko:K13196,ko:K22197
KEGG Pathwayko05225,map05225
Evalue4.29e-09
EggNOG OGsKOG0773@1|root,KOG1244@1|root,KOG0773@2759|Eukaryota,KOG1244@2759|Eukaryota
Descriptionzinc ion binding
COG categoryS
BRITEko00000,ko00001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5896Ggra5896Gracilaria gracilis GNS1m malegenetig00000068_pilon 447608..448537 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5896.t1.stop1Ggra5896.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 447608..447610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5896.t1.CDS1Ggra5896.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 447608..448537 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5896.t1.exon1Ggra5896.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 447608..448537 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5896.t1.start1Ggra5896.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 448535..448537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5896.t1Ggra5896.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 447608..448537 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5896.t1 ID=Ggra5896.t1|Name=Ggra5896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=310bp
MAAPLAAPQLVMYDDFLIEAYCSIAFVPFASVSEQRGSAHKSADHERQDE
LYGRCRICCSSSRSSEPMLLCDSCDRAFHQECVHPRLKELPKGEWHCSKC
TSAALYNLHTRAATVSNLRNVLRDMHIFPTLPLKLRFKMLDLFASARAPR
VAAPAPAVCAPSSRAPSSRAPFKSLPPKLRSKRRRSWSAPAQAQRAPCAV
ANADAPALSAALLAAPARSVVRLARHLQPVAQLLSNHQALHALCVLEAHF
SAQRAARCGRTVKGAPRLTVADGGAQGAARVRASHPSPNRLAPPLQAAES
LVTPAAIYK*
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spliced messenger RNA

>Ggra5896.t1 ID=Ggra5896.t1|Name=Ggra5896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000068_pilon:447608..448537- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCGCCGCTTGCCGCTCCGCAGCTCGTCATGTACGACGACTTTCT
CATCGAGGCGTACTGCTCCATCGCGTTTGTGCCGTTCGCCAGCGTGAGCG
AGCAGCGCGGATCCGCGCACAAGAGCGCCGACCACGAGCGGCAGGACGAG
CTGTACGGTCGCTGTCGCATATGCTGCTCGTCGAGCCGCTCGTCGGAGCC
CATGCTGCTGTGCGACAGCTGCGACCGAGCGTTTCATCAGGAATGCGTTC
ACCCGCGTCTCAAGGAGCTTCCCAAAGGCGAGTGGCACTGCTCCAAGTGC
ACAAGCGCCGCGCTGTACAACCTGCACACTCGCGCCGCCACCGTCTCAAA
CCTGCGCAACGTGCTGCGAGACATGCACATCTTCCCCACCCTACCGCTCA
AGCTGCGCTTTAAGATGCTCGATCTGTTTGCCAGCGCGCGCGCGCCGCGC
GTCGCTGCGCCTGCACCCGCTGTCTGCGCGCCGTCTTCTCGCGCGCCGTC
GTCTCGCGCGCCGTTCAAGAGCCTGCCGCCCAAGCTGCGAAGCAAACGAA
GGCGCAGTTGGTCAGCGCCCGCGCAGGCGCAGCGCGCTCCGTGCGCCGTC
GCCAACGCCGACGCGCCCGCGCTCAGCGCCGCGCTGCTGGCCGCGCCGGC
GCGCAGCGTGGTGCGTCTGGCTCGCCACCTACAGCCCGTGGCGCAGCTTC
TTAGCAACCATCAGGCGCTGCACGCGCTGTGCGTGCTGGAGGCGCACTTC
AGCGCGCAGCGCGCCGCGCGCTGTGGACGCACCGTAAAAGGCGCCCCCCG
ACTCACCGTTGCCGACGGTGGCGCGCAAGGAGCAGCGCGTGTGCGCGCTT
CTCACCCGAGTCCAAATCGATTGGCTCCTCCGCTTCAAGCCGCCGAATCG
CTCGTCACGCCGGCAGCTATCTACAAATAG
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protein sequence of Ggra5896.t1

>Ggra5896.t1 ID=Ggra5896.t1|Name=Ggra5896.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=310bp
MAAPLAAPQLVMYDDFLIEAYCSIAFVPFASVSEQRGSAHKSADHERQDE
LYGRCRICCSSSRSSEPMLLCDSCDRAFHQECVHPRLKELPKGEWHCSKC
TSAALYNLHTRAATVSNLRNVLRDMHIFPTLPLKLRFKMLDLFASARAPR
VAAPAPAVCAPSSRAPSSRAPFKSLPPKLRSKRRRSWSAPAQAQRAPCAV
ANADAPALSAALLAAPARSVVRLARHLQPVAQLLSNHQALHALCVLEAHF
SAQRAARCGRTVKGAPRLTVADGGAQGAARVRASHPSPNRLAPPLQAAES
LVTPAAIYK*
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mRNA from alignment at tig00000068_pilon:447608..448537-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5896.t1 ID=Ggra5896.t1|Name=Ggra5896.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=930bp|location=Sequence derived from alignment at tig00000068_pilon:447608..448537- (Gracilaria gracilis GNS1m male)
ATGGCCGCGCCGCTTGCCGCTCCGCAGCTCGTCATGTACGACGACTTTCT
CATCGAGGCGTACTGCTCCATCGCGTTTGTGCCGTTCGCCAGCGTGAGCG
AGCAGCGCGGATCCGCGCACAAGAGCGCCGACCACGAGCGGCAGGACGAG
CTGTACGGTCGCTGTCGCATATGCTGCTCGTCGAGCCGCTCGTCGGAGCC
CATGCTGCTGTGCGACAGCTGCGACCGAGCGTTTCATCAGGAATGCGTTC
ACCCGCGTCTCAAGGAGCTTCCCAAAGGCGAGTGGCACTGCTCCAAGTGC
ACAAGCGCCGCGCTGTACAACCTGCACACTCGCGCCGCCACCGTCTCAAA
CCTGCGCAACGTGCTGCGAGACATGCACATCTTCCCCACCCTACCGCTCA
AGCTGCGCTTTAAGATGCTCGATCTGTTTGCCAGCGCGCGCGCGCCGCGC
GTCGCTGCGCCTGCACCCGCTGTCTGCGCGCCGTCTTCTCGCGCGCCGTC
GTCTCGCGCGCCGTTCAAGAGCCTGCCGCCCAAGCTGCGAAGCAAACGAA
GGCGCAGTTGGTCAGCGCCCGCGCAGGCGCAGCGCGCTCCGTGCGCCGTC
GCCAACGCCGACGCGCCCGCGCTCAGCGCCGCGCTGCTGGCCGCGCCGGC
GCGCAGCGTGGTGCGTCTGGCTCGCCACCTACAGCCCGTGGCGCAGCTTC
TTAGCAACCATCAGGCGCTGCACGCGCTGTGCGTGCTGGAGGCGCACTTC
AGCGCGCAGCGCGCCGCGCGCTGTGGACGCACCGTAAAAGGCGCCCCCCG
ACTCACCGTTGCCGACGGTGGCGCGCAAGGAGCAGCGCGTGTGCGCGCTT
CTCACCCGAGTCCAAATCGATTGGCTCCTCCGCTTCAAGCCGCCGAATCG
CTCGTCACGCCGGCAGCTATCTACAAATAG
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Coding sequence (CDS) from alignment at tig00000068_pilon:447608..448537-

>Ggra5896.t1 ID=Ggra5896.t1|Name=Ggra5896.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=930bp|location=Sequence derived from alignment at tig00000068_pilon:447608..448537- (Gracilaria gracilis GNS1m male)
ATGGCCGCGCCGCTTGCCGCTCCGCAGCTCGTCATGTACGACGACTTTCT
CATCGAGGCGTACTGCTCCATCGCGTTTGTGCCGTTCGCCAGCGTGAGCG
AGCAGCGCGGATCCGCGCACAAGAGCGCCGACCACGAGCGGCAGGACGAG
CTGTACGGTCGCTGTCGCATATGCTGCTCGTCGAGCCGCTCGTCGGAGCC
CATGCTGCTGTGCGACAGCTGCGACCGAGCGTTTCATCAGGAATGCGTTC
ACCCGCGTCTCAAGGAGCTTCCCAAAGGCGAGTGGCACTGCTCCAAGTGC
ACAAGCGCCGCGCTGTACAACCTGCACACTCGCGCCGCCACCGTCTCAAA
CCTGCGCAACGTGCTGCGAGACATGCACATCTTCCCCACCCTACCGCTCA
AGCTGCGCTTTAAGATGCTCGATCTGTTTGCCAGCGCGCGCGCGCCGCGC
GTCGCTGCGCCTGCACCCGCTGTCTGCGCGCCGTCTTCTCGCGCGCCGTC
GTCTCGCGCGCCGTTCAAGAGCCTGCCGCCCAAGCTGCGAAGCAAACGAA
GGCGCAGTTGGTCAGCGCCCGCGCAGGCGCAGCGCGCTCCGTGCGCCGTC
GCCAACGCCGACGCGCCCGCGCTCAGCGCCGCGCTGCTGGCCGCGCCGGC
GCGCAGCGTGGTGCGTCTGGCTCGCCACCTACAGCCCGTGGCGCAGCTTC
TTAGCAACCATCAGGCGCTGCACGCGCTGTGCGTGCTGGAGGCGCACTTC
AGCGCGCAGCGCGCCGCGCGCTGTGGACGCACCGTAAAAGGCGCCCCCCG
ACTCACCGTTGCCGACGGTGGCGCGCAAGGAGCAGCGCGTGTGCGCGCTT
CTCACCCGAGTCCAAATCGATTGGCTCCTCCGCTTCAAGCCGCCGAATCG
CTCGTCACGCCGGCAGCTATCTACAAATAG
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