Ggra5933.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra5933.t1
Unique NameGgra5933.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length388
Homology
[Close]
BLAST of Ggra5933.t1 vs. uniprot
Match: A0A2V3J3D2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3D2_9FLOR)

HSP 1 Score: 137 bits (345), Expect = 1.350e-33
Identity = 106/276 (38.41%), Postives = 153/276 (55.43%), Query Frame = 0 
Query:  118 SSEASKISFMLNDILKVALSPVFGQRNLEPNDDL-NEQGDGLKRTRYGANLTEEERRAERNRKGRERSMRTRRRNAAHLKMLEEGCNRLIMENRLLRDLLNCLQRVPLAEEIIISLLRS-LLSHSRLPSAFHQGAELLLEGVSVPSSSKTPLTYHKMISNAEDHDSSWACD-----KVDQTCTLSKNGIQTVDTVSKKKVDSSVSGWEPRQILESVPEGSDVSKASMTTRKSLDTSVDVGFEARFHNSVDEGNEVRQGERSVLANFSLDEIDAVIS 386
            S +++ +S  L +ILK  LS    + ++ P   L +      + +  G +LT+EERRAERNRKGRERS+RTR RNAAH+K LE  C RL  EN+ LR+L+NCL+R P  EE +IS+ R+ LLS S L S FH  A  + E +++P  S T LT+ K  SN E+   + A       ++ ++  +   G + + T    + D   S W+P Q      E S+ SK SMT  K+         E   HN  +  NE+   +RSVLA F+L++I   +S
Sbjct:   68 SLDSTGLSLRLCNILKGCLSRASYEEDIVPELGLVHRPVSDFENSNQGNDLTQEERRAERNRKGRERSLRTRLRNAAHIKTLETACARLARENKTLRELVNCLKRAPPPEERLISIFRTILLSSSGLSSVFHPTAGRV-EHLAIPPCSATSLTFPKGSSNFEELSKNQAASSTAEVQISRSSGVRPTGYEPLGTHLVPENDDEFSLWKPGQA-----EVSNSSKTSMTGVKNAVDVETTRSEIGTHNLYNPTNEILDQDRSVLAKFTLEDIKTCLS 337
The following BLAST results are available for this feature:
BLAST of Ggra5933.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J3D21.350e-3338.41Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 149..181
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..387
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:602833..603996 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5933.t1Ggra5933.t1Gracilaria gracilis GNS1m malemRNAtig00000068_pilon 602833..603996 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra5933.t1 ID=Ggra5933.t1|Name=Ggra5933.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=388bp
MRRVLSATTLPLAQEFDQQVESFKPSAVYPTSKGRSESSKQMQAAAWNGD
SVEDDAASTDVVWNADRGSENQNPQGTKVSDCPMVSSLFLNIGTELKWDG
HNRLVYELATGTPRLGFSSEASKISFMLNDILKVALSPVFGQRNLEPNDD
LNEQGDGLKRTRYGANLTEEERRAERNRKGRERSMRTRRRNAAHLKMLEE
GCNRLIMENRLLRDLLNCLQRVPLAEEIIISLLRSLLSHSRLPSAFHQGA
ELLLEGVSVPSSSKTPLTYHKMISNAEDHDSSWACDKVDQTCTLSKNGIQ
TVDTVSKKKVDSSVSGWEPRQILESVPEGSDVSKASMTTRKSLDTSVDVG
FEARFHNSVDEGNEVRQGERSVLANFSLDEIDAVISL*
back to top