Ggra5933.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5933.t1
Unique NameGgra5933.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length388
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000068_piloncontigtig00000068_pilon:602833..603996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5933Ggra5933Gracilaria gracilis GNS1m malegenetig00000068_pilon 602833..603996 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5933.t1.stop1Ggra5933.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000068_pilon 602833..602835 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5933.t1.CDS1Ggra5933.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000068_pilon 602833..603996 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5933.t1.exon1Ggra5933.t1.exon1Gracilaria gracilis GNS1m maleexontig00000068_pilon 602833..603996 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5933.t1.start1Ggra5933.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000068_pilon 603994..603996 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5933.t1Ggra5933.t1Gracilaria gracilis GNS1m malepolypeptidetig00000068_pilon 602833..603996 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5933.t1 ID=Ggra5933.t1|Name=Ggra5933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=388bp
MRRVLSATTLPLAQEFDQQVESFKPSAVYPTSKGRSESSKQMQAAAWNGD
SVEDDAASTDVVWNADRGSENQNPQGTKVSDCPMVSSLFLNIGTELKWDG
HNRLVYELATGTPRLGFSSEASKISFMLNDILKVALSPVFGQRNLEPNDD
LNEQGDGLKRTRYGANLTEEERRAERNRKGRERSMRTRRRNAAHLKMLEE
GCNRLIMENRLLRDLLNCLQRVPLAEEIIISLLRSLLSHSRLPSAFHQGA
ELLLEGVSVPSSSKTPLTYHKMISNAEDHDSSWACDKVDQTCTLSKNGIQ
TVDTVSKKKVDSSVSGWEPRQILESVPEGSDVSKASMTTRKSLDTSVDVG
FEARFHNSVDEGNEVRQGERSVLANFSLDEIDAVISL*
back to top

spliced messenger RNA

>Ggra5933.t1 ID=Ggra5933.t1|Name=Ggra5933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000068_pilon:602833..603996- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCAGAGTCCTTTCCGCAACCACGTTACCGCTTGCTCAGGAATTTGA
CCAGCAAGTTGAAAGCTTCAAGCCCTCAGCAGTGTACCCGACTTCAAAGG
GTCGCTCCGAAAGCTCGAAGCAGATGCAAGCTGCTGCTTGGAACGGTGAT
TCTGTCGAAGACGATGCCGCTTCAACAGATGTGGTTTGGAACGCTGATAG
AGGGAGCGAGAATCAGAATCCGCAAGGCACCAAGGTCTCAGATTGCCCAA
TGGTTTCGTCTCTTTTTCTAAACATTGGAACGGAACTGAAATGGGATGGA
CACAATAGGTTGGTTTATGAACTCGCAACTGGAACCCCTCGATTAGGGTT
TTCCTCAGAAGCCAGCAAAATTTCGTTTATGTTGAATGACATTCTGAAGG
TAGCCCTCTCACCTGTGTTTGGGCAACGAAACTTGGAACCAAATGATGAT
CTAAATGAGCAGGGTGATGGACTCAAGCGCACGAGGTATGGAGCAAACCT
GACAGAAGAAGAGAGAAGAGCTGAAAGAAATCGAAAAGGCCGTGAGCGTA
GCATGCGAACACGTCGACGAAATGCGGCACATCTAAAAATGCTGGAAGAA
GGATGTAATCGACTCATCATGGAAAACCGGTTGTTGCGAGACCTTTTGAA
TTGTTTGCAAAGAGTACCCCTTGCTGAAGAGATAATTATTTCGCTTTTGC
GAAGTCTTCTCTCCCATTCTAGGCTTCCATCTGCTTTCCATCAAGGTGCT
GAACTTCTTTTGGAGGGGGTTTCAGTGCCGTCGAGCTCCAAAACACCGCT
GACGTATCACAAGATGATATCTAATGCTGAAGATCACGACAGTTCTTGGG
CCTGTGATAAAGTGGATCAAACATGTACACTGTCCAAAAACGGAATCCAG
ACGGTCGATACTGTGAGCAAGAAGAAGGTCGATTCCTCTGTATCGGGTTG
GGAACCGAGGCAAATTCTAGAAAGTGTGCCGGAAGGCTCAGATGTATCCA
AAGCATCTATGACAACTCGTAAGAGTCTGGATACAAGTGTAGATGTTGGT
TTCGAAGCCCGTTTTCACAACTCTGTTGACGAAGGTAATGAAGTTCGCCA
GGGAGAGCGATCTGTGTTGGCCAACTTCAGCTTGGATGAAATTGATGCCG
TGATATCTTTGTAG
back to top

protein sequence of Ggra5933.t1

>Ggra5933.t1 ID=Ggra5933.t1|Name=Ggra5933.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=388bp
MRRVLSATTLPLAQEFDQQVESFKPSAVYPTSKGRSESSKQMQAAAWNGD
SVEDDAASTDVVWNADRGSENQNPQGTKVSDCPMVSSLFLNIGTELKWDG
HNRLVYELATGTPRLGFSSEASKISFMLNDILKVALSPVFGQRNLEPNDD
LNEQGDGLKRTRYGANLTEEERRAERNRKGRERSMRTRRRNAAHLKMLEE
GCNRLIMENRLLRDLLNCLQRVPLAEEIIISLLRSLLSHSRLPSAFHQGA
ELLLEGVSVPSSSKTPLTYHKMISNAEDHDSSWACDKVDQTCTLSKNGIQ
TVDTVSKKKVDSSVSGWEPRQILESVPEGSDVSKASMTTRKSLDTSVDVG
FEARFHNSVDEGNEVRQGERSVLANFSLDEIDAVISL*
back to top

mRNA from alignment at tig00000068_pilon:602833..603996-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5933.t1 ID=Ggra5933.t1|Name=Ggra5933.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1164bp|location=Sequence derived from alignment at tig00000068_pilon:602833..603996- (Gracilaria gracilis GNS1m male)
ATGCGCAGAGTCCTTTCCGCAACCACGTTACCGCTTGCTCAGGAATTTGA
CCAGCAAGTTGAAAGCTTCAAGCCCTCAGCAGTGTACCCGACTTCAAAGG
GTCGCTCCGAAAGCTCGAAGCAGATGCAAGCTGCTGCTTGGAACGGTGAT
TCTGTCGAAGACGATGCCGCTTCAACAGATGTGGTTTGGAACGCTGATAG
AGGGAGCGAGAATCAGAATCCGCAAGGCACCAAGGTCTCAGATTGCCCAA
TGGTTTCGTCTCTTTTTCTAAACATTGGAACGGAACTGAAATGGGATGGA
CACAATAGGTTGGTTTATGAACTCGCAACTGGAACCCCTCGATTAGGGTT
TTCCTCAGAAGCCAGCAAAATTTCGTTTATGTTGAATGACATTCTGAAGG
TAGCCCTCTCACCTGTGTTTGGGCAACGAAACTTGGAACCAAATGATGAT
CTAAATGAGCAGGGTGATGGACTCAAGCGCACGAGGTATGGAGCAAACCT
GACAGAAGAAGAGAGAAGAGCTGAAAGAAATCGAAAAGGCCGTGAGCGTA
GCATGCGAACACGTCGACGAAATGCGGCACATCTAAAAATGCTGGAAGAA
GGATGTAATCGACTCATCATGGAAAACCGGTTGTTGCGAGACCTTTTGAA
TTGTTTGCAAAGAGTACCCCTTGCTGAAGAGATAATTATTTCGCTTTTGC
GAAGTCTTCTCTCCCATTCTAGGCTTCCATCTGCTTTCCATCAAGGTGCT
GAACTTCTTTTGGAGGGGGTTTCAGTGCCGTCGAGCTCCAAAACACCGCT
GACGTATCACAAGATGATATCTAATGCTGAAGATCACGACAGTTCTTGGG
CCTGTGATAAAGTGGATCAAACATGTACACTGTCCAAAAACGGAATCCAG
ACGGTCGATACTGTGAGCAAGAAGAAGGTCGATTCCTCTGTATCGGGTTG
GGAACCGAGGCAAATTCTAGAAAGTGTGCCGGAAGGCTCAGATGTATCCA
AAGCATCTATGACAACTCGTAAGAGTCTGGATACAAGTGTAGATGTTGGT
TTCGAAGCCCGTTTTCACAACTCTGTTGACGAAGGTAATGAAGTTCGCCA
GGGAGAGCGATCTGTGTTGGCCAACTTCAGCTTGGATGAAATTGATGCCG
TGATATCTTTGTAG
back to top

Coding sequence (CDS) from alignment at tig00000068_pilon:602833..603996-

>Ggra5933.t1 ID=Ggra5933.t1|Name=Ggra5933.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1164bp|location=Sequence derived from alignment at tig00000068_pilon:602833..603996- (Gracilaria gracilis GNS1m male)
ATGCGCAGAGTCCTTTCCGCAACCACGTTACCGCTTGCTCAGGAATTTGA
CCAGCAAGTTGAAAGCTTCAAGCCCTCAGCAGTGTACCCGACTTCAAAGG
GTCGCTCCGAAAGCTCGAAGCAGATGCAAGCTGCTGCTTGGAACGGTGAT
TCTGTCGAAGACGATGCCGCTTCAACAGATGTGGTTTGGAACGCTGATAG
AGGGAGCGAGAATCAGAATCCGCAAGGCACCAAGGTCTCAGATTGCCCAA
TGGTTTCGTCTCTTTTTCTAAACATTGGAACGGAACTGAAATGGGATGGA
CACAATAGGTTGGTTTATGAACTCGCAACTGGAACCCCTCGATTAGGGTT
TTCCTCAGAAGCCAGCAAAATTTCGTTTATGTTGAATGACATTCTGAAGG
TAGCCCTCTCACCTGTGTTTGGGCAACGAAACTTGGAACCAAATGATGAT
CTAAATGAGCAGGGTGATGGACTCAAGCGCACGAGGTATGGAGCAAACCT
GACAGAAGAAGAGAGAAGAGCTGAAAGAAATCGAAAAGGCCGTGAGCGTA
GCATGCGAACACGTCGACGAAATGCGGCACATCTAAAAATGCTGGAAGAA
GGATGTAATCGACTCATCATGGAAAACCGGTTGTTGCGAGACCTTTTGAA
TTGTTTGCAAAGAGTACCCCTTGCTGAAGAGATAATTATTTCGCTTTTGC
GAAGTCTTCTCTCCCATTCTAGGCTTCCATCTGCTTTCCATCAAGGTGCT
GAACTTCTTTTGGAGGGGGTTTCAGTGCCGTCGAGCTCCAAAACACCGCT
GACGTATCACAAGATGATATCTAATGCTGAAGATCACGACAGTTCTTGGG
CCTGTGATAAAGTGGATCAAACATGTACACTGTCCAAAAACGGAATCCAG
ACGGTCGATACTGTGAGCAAGAAGAAGGTCGATTCCTCTGTATCGGGTTG
GGAACCGAGGCAAATTCTAGAAAGTGTGCCGGAAGGCTCAGATGTATCCA
AAGCATCTATGACAACTCGTAAGAGTCTGGATACAAGTGTAGATGTTGGT
TTCGAAGCCCGTTTTCACAACTCTGTTGACGAAGGTAATGAAGTTCGCCA
GGGAGAGCGATCTGTGTTGGCCAACTTCAGCTTGGATGAAATTGATGCCG
TGATATCTTTGTAG
back to top