Ggra2624.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra2624.t1
Unique NameGgra2624.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length457
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000005_piloncontigtig00000005_pilon:973769..975139 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703595.1
PFAMsTubulin,Tubulin_C
Max annot lvl2759|Eukaryota
KEGG koko:K07375
KEGG Pathwayko04145,ko04540,ko05130,map04145,map04540,map05130
GOsGO:0003674,GO:0005198,GO:0005200,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005874,GO:0006996,GO:0007010,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0071840,GO:0099080,GO:0099081,GO:0099512,GO:0099513
Evalue3.3e-226
EggNOG OGsCOG5023@1|root,KOG1375@2759|Eukaryota
Descriptionstructural constituent of cytoskeleton
COG categoryZ
BRITEko00000,ko00001,ko03036,ko04147,ko04812
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra2624Ggra2624Gracilaria gracilis GNS1m malegenetig00000005_pilon 973769..975139 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2624.t1.stop1Ggra2624.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000005_pilon 973769..973771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2624.t1.CDS1Ggra2624.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000005_pilon 973769..975139 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2624.t1.exon1Ggra2624.t1.exon1Gracilaria gracilis GNS1m maleexontig00000005_pilon 973769..975139 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2624.t1.start1Ggra2624.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000005_pilon 975137..975139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra2624.t1Ggra2624.t1Gracilaria gracilis GNS1m malepolypeptidetig00000005_pilon 973769..975139 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra2624.t1 ID=Ggra2624.t1|Name=Ggra2624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=457bp
MSRGIVCLQAGQCGNQMGTAFWETISEEHGVDHKGTYDGDDEFKKERIGV
YYREGSEGRFVPRSVMLDLETGVIDNIRAGPMGALFDPENFVCGQSGAGN
NWAKGHYTEGAELIDNVLDRVHHETEACDVLQGFQVSHSLGGGTGSGLGT
LLVSKIREEYPDRMLVTYSVMPSPKVSDTVVEPYNCTLSIHQLIENADAV
FSIDNEALYNICTNTLKAPANDYGVLNKLVSSVMSGVTCSLRFPGQLNAD
LRKLAVNLIPFPRLHFFVVGYAPLSGSGSEIYKSHTVPELTFQMFESRNM
MADCKPHEGRYLTAAAYFRGKVSTEEVEDEMRKVQDKNSNQFVDWIPNNT
KTSVCNVPPPGQKITATFIGNSTAIQDMFRRVGDQFSLMFKRKAFLHWYT
GEGMDEMEFHEAESNMQDLIQEYIQYQDARVGEYPEDSFVDDGYDDEEIP
EEEPVE*
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spliced messenger RNA

>Ggra2624.t1 ID=Ggra2624.t1|Name=Ggra2624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000005_pilon:973769..975139- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCGGAATCGTTTGTCTTCAAGCTGGCCAATGTGGAAATCAGAT
GGGTACCGCGTTTTGGGAGACCATCTCCGAGGAACACGGCGTTGACCATA
AGGGAACCTATGACGGTGATGATGAGTTTAAGAAGGAGCGAATCGGTGTC
TACTATCGTGAAGGATCTGAGGGTCGCTTTGTGCCCCGGTCAGTTATGCT
TGACCTGGAAACAGGCGTCATAGATAACATTAGAGCGGGCCCCATGGGTG
CGCTCTTCGATCCTGAAAACTTTGTCTGTGGTCAATCTGGTGCTGGTAAT
AACTGGGCGAAAGGGCATTACACCGAGGGTGCTGAGCTTATTGACAATGT
TCTTGACCGTGTTCACCATGAAACTGAAGCATGTGATGTGCTTCAAGGAT
TCCAGGTTTCGCACTCCCTTGGTGGCGGTACTGGTTCTGGACTTGGCACT
CTGCTTGTGTCGAAGATTCGTGAGGAATATCCGGACCGTATGCTCGTTAC
ATATTCAGTAATGCCTTCCCCCAAGGTTTCGGACACTGTCGTAGAGCCAT
ACAACTGCACTTTGTCTATACACCAACTCATCGAAAATGCTGATGCTGTG
TTCTCTATTGACAATGAGGCGCTATACAACATTTGTACAAATACCCTCAA
AGCCCCAGCAAACGATTATGGTGTCCTGAACAAACTCGTTTCAAGTGTCA
TGTCCGGAGTCACTTGCTCGCTTCGCTTCCCTGGTCAGCTGAACGCCGAT
CTTCGCAAGCTTGCAGTCAACCTGATTCCCTTCCCCCGCCTACATTTCTT
CGTCGTTGGTTACGCCCCGCTTTCGGGCTCGGGAAGTGAAATCTACAAGT
CCCACACAGTGCCAGAGCTCACATTCCAAATGTTTGAGTCAAGGAACATG
ATGGCCGATTGCAAGCCTCACGAGGGTCGCTATCTCACTGCTGCTGCTTA
CTTCCGAGGTAAGGTTTCCACAGAAGAAGTCGAAGACGAGATGAGAAAGG
TGCAAGATAAGAACTCCAACCAGTTTGTCGATTGGATTCCGAACAACACC
AAGACTAGTGTCTGTAACGTTCCTCCGCCGGGCCAAAAGATCACCGCTAC
CTTCATTGGCAACTCAACTGCAATCCAAGATATGTTCAGAAGAGTGGGAG
ATCAATTCTCTCTCATGTTCAAGCGCAAGGCTTTCTTGCATTGGTATACC
GGTGAGGGAATGGACGAAATGGAGTTCCACGAGGCAGAGTCCAACATGCA
AGATCTTATTCAGGAGTACATCCAATACCAAGATGCGAGAGTAGGGGAAT
ACCCCGAAGATTCTTTTGTTGACGACGGGTACGATGACGAAGAAATACCT
GAAGAGGAACCAGTGGAGTGA
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protein sequence of Ggra2624.t1

>Ggra2624.t1 ID=Ggra2624.t1|Name=Ggra2624.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=457bp
MSRGIVCLQAGQCGNQMGTAFWETISEEHGVDHKGTYDGDDEFKKERIGV
YYREGSEGRFVPRSVMLDLETGVIDNIRAGPMGALFDPENFVCGQSGAGN
NWAKGHYTEGAELIDNVLDRVHHETEACDVLQGFQVSHSLGGGTGSGLGT
LLVSKIREEYPDRMLVTYSVMPSPKVSDTVVEPYNCTLSIHQLIENADAV
FSIDNEALYNICTNTLKAPANDYGVLNKLVSSVMSGVTCSLRFPGQLNAD
LRKLAVNLIPFPRLHFFVVGYAPLSGSGSEIYKSHTVPELTFQMFESRNM
MADCKPHEGRYLTAAAYFRGKVSTEEVEDEMRKVQDKNSNQFVDWIPNNT
KTSVCNVPPPGQKITATFIGNSTAIQDMFRRVGDQFSLMFKRKAFLHWYT
GEGMDEMEFHEAESNMQDLIQEYIQYQDARVGEYPEDSFVDDGYDDEEIP
EEEPVE*
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mRNA from alignment at tig00000005_pilon:973769..975139-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra2624.t1 ID=Ggra2624.t1|Name=Ggra2624.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1371bp|location=Sequence derived from alignment at tig00000005_pilon:973769..975139- (Gracilaria gracilis GNS1m male)
ATGTCGCGCGGAATCGTTTGTCTTCAAGCTGGCCAATGTGGAAATCAGAT
GGGTACCGCGTTTTGGGAGACCATCTCCGAGGAACACGGCGTTGACCATA
AGGGAACCTATGACGGTGATGATGAGTTTAAGAAGGAGCGAATCGGTGTC
TACTATCGTGAAGGATCTGAGGGTCGCTTTGTGCCCCGGTCAGTTATGCT
TGACCTGGAAACAGGCGTCATAGATAACATTAGAGCGGGCCCCATGGGTG
CGCTCTTCGATCCTGAAAACTTTGTCTGTGGTCAATCTGGTGCTGGTAAT
AACTGGGCGAAAGGGCATTACACCGAGGGTGCTGAGCTTATTGACAATGT
TCTTGACCGTGTTCACCATGAAACTGAAGCATGTGATGTGCTTCAAGGAT
TCCAGGTTTCGCACTCCCTTGGTGGCGGTACTGGTTCTGGACTTGGCACT
CTGCTTGTGTCGAAGATTCGTGAGGAATATCCGGACCGTATGCTCGTTAC
ATATTCAGTAATGCCTTCCCCCAAGGTTTCGGACACTGTCGTAGAGCCAT
ACAACTGCACTTTGTCTATACACCAACTCATCGAAAATGCTGATGCTGTG
TTCTCTATTGACAATGAGGCGCTATACAACATTTGTACAAATACCCTCAA
AGCCCCAGCAAACGATTATGGTGTCCTGAACAAACTCGTTTCAAGTGTCA
TGTCCGGAGTCACTTGCTCGCTTCGCTTCCCTGGTCAGCTGAACGCCGAT
CTTCGCAAGCTTGCAGTCAACCTGATTCCCTTCCCCCGCCTACATTTCTT
CGTCGTTGGTTACGCCCCGCTTTCGGGCTCGGGAAGTGAAATCTACAAGT
CCCACACAGTGCCAGAGCTCACATTCCAAATGTTTGAGTCAAGGAACATG
ATGGCCGATTGCAAGCCTCACGAGGGTCGCTATCTCACTGCTGCTGCTTA
CTTCCGAGGTAAGGTTTCCACAGAAGAAGTCGAAGACGAGATGAGAAAGG
TGCAAGATAAGAACTCCAACCAGTTTGTCGATTGGATTCCGAACAACACC
AAGACTAGTGTCTGTAACGTTCCTCCGCCGGGCCAAAAGATCACCGCTAC
CTTCATTGGCAACTCAACTGCAATCCAAGATATGTTCAGAAGAGTGGGAG
ATCAATTCTCTCTCATGTTCAAGCGCAAGGCTTTCTTGCATTGGTATACC
GGTGAGGGAATGGACGAAATGGAGTTCCACGAGGCAGAGTCCAACATGCA
AGATCTTATTCAGGAGTACATCCAATACCAAGATGCGAGAGTAGGGGAAT
ACCCCGAAGATTCTTTTGTTGACGACGGGTACGATGACGAAGAAATACCT
GAAGAGGAACCAGTGGAGTGA
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Coding sequence (CDS) from alignment at tig00000005_pilon:973769..975139-

>Ggra2624.t1 ID=Ggra2624.t1|Name=Ggra2624.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1371bp|location=Sequence derived from alignment at tig00000005_pilon:973769..975139- (Gracilaria gracilis GNS1m male)
ATGTCGCGCGGAATCGTTTGTCTTCAAGCTGGCCAATGTGGAAATCAGAT
GGGTACCGCGTTTTGGGAGACCATCTCCGAGGAACACGGCGTTGACCATA
AGGGAACCTATGACGGTGATGATGAGTTTAAGAAGGAGCGAATCGGTGTC
TACTATCGTGAAGGATCTGAGGGTCGCTTTGTGCCCCGGTCAGTTATGCT
TGACCTGGAAACAGGCGTCATAGATAACATTAGAGCGGGCCCCATGGGTG
CGCTCTTCGATCCTGAAAACTTTGTCTGTGGTCAATCTGGTGCTGGTAAT
AACTGGGCGAAAGGGCATTACACCGAGGGTGCTGAGCTTATTGACAATGT
TCTTGACCGTGTTCACCATGAAACTGAAGCATGTGATGTGCTTCAAGGAT
TCCAGGTTTCGCACTCCCTTGGTGGCGGTACTGGTTCTGGACTTGGCACT
CTGCTTGTGTCGAAGATTCGTGAGGAATATCCGGACCGTATGCTCGTTAC
ATATTCAGTAATGCCTTCCCCCAAGGTTTCGGACACTGTCGTAGAGCCAT
ACAACTGCACTTTGTCTATACACCAACTCATCGAAAATGCTGATGCTGTG
TTCTCTATTGACAATGAGGCGCTATACAACATTTGTACAAATACCCTCAA
AGCCCCAGCAAACGATTATGGTGTCCTGAACAAACTCGTTTCAAGTGTCA
TGTCCGGAGTCACTTGCTCGCTTCGCTTCCCTGGTCAGCTGAACGCCGAT
CTTCGCAAGCTTGCAGTCAACCTGATTCCCTTCCCCCGCCTACATTTCTT
CGTCGTTGGTTACGCCCCGCTTTCGGGCTCGGGAAGTGAAATCTACAAGT
CCCACACAGTGCCAGAGCTCACATTCCAAATGTTTGAGTCAAGGAACATG
ATGGCCGATTGCAAGCCTCACGAGGGTCGCTATCTCACTGCTGCTGCTTA
CTTCCGAGGTAAGGTTTCCACAGAAGAAGTCGAAGACGAGATGAGAAAGG
TGCAAGATAAGAACTCCAACCAGTTTGTCGATTGGATTCCGAACAACACC
AAGACTAGTGTCTGTAACGTTCCTCCGCCGGGCCAAAAGATCACCGCTAC
CTTCATTGGCAACTCAACTGCAATCCAAGATATGTTCAGAAGAGTGGGAG
ATCAATTCTCTCTCATGTTCAAGCGCAAGGCTTTCTTGCATTGGTATACC
GGTGAGGGAATGGACGAAATGGAGTTCCACGAGGCAGAGTCCAACATGCA
AGATCTTATTCAGGAGTACATCCAATACCAAGATGCGAGAGTAGGGGAAT
ACCCCGAAGATTCTTTTGTTGACGACGGGTACGATGACGAAGAAATACCT
GAAGAGGAACCAGTGGAGTGA
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