Ggra4706.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra4706.t1
Unique NameGgra4706.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length252
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000065_piloncontigtig00000065_pilon:11380..12226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702929.1
Preferred nameSURF4
PFAMsSURF4
Max annot lvl2759|Eukaryota
KEGG koko:K14998,ko:K20369
KEGG TC3.D.4.8
GOsGO:0000139,GO:0000323,GO:0001775,GO:0002119,GO:0002164,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005886,GO:0006810,GO:0006887,GO:0006888,GO:0006890,GO:0006955,GO:0006996,GO:0007005,GO:0007030,GO:0007275,GO:0008150,GO:0008535,GO:0009791,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009968,GO:0009987,GO:0010256,GO:0010604,GO:0010638,GO:0010646,GO:0010648,GO:0012505,GO:0012506,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0017004,GO:0019222,GO:0022607,GO:0023051,GO:0023057,GO:0030133,GO:0030134,GO:0030135,GO:0030141,GO:0030659,GO:0030667,GO:0030674,GO:0031090,GO:0031224,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031410,GO:0031982,GO:0031984,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032940,GO:0033043,GO:0033108,GO:0033617,GO:0034622,GO:0035577,GO:0036230,GO:0040027,GO:0040028,GO:0042058,GO:0042059,GO:0042119,GO:0042175,GO:0042176,GO:0042582,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045169,GO:0045321,GO:0045732,GO:0046903,GO:0046907,GO:0048193,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048581,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0060090,GO:0060255,GO:0061062,GO:0061064,GO:0065003,GO:0065007,GO:0071840,GO:0071944,GO:0080090,GO:0097020,GO:0097708,GO:0098588,GO:0098791,GO:0098805,GO:0098827,GO:0098852,GO:0099503,GO:1901184,GO:1901185,GO:1903362,GO:1903364,GO:2000026
Evalue4.72e-14
EggNOG OGsCOG2259@1|root,KOG3998@2759|Eukaryota
DescriptionCOPII adaptor activity
COG categoryM
BRITEko00000,ko03029,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4706Ggra4706Gracilaria gracilis GNS1m malegenetig00000065_pilon 11380..12226 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4706.t1Ggra4706.t1Gracilaria gracilis GNS1m malepolypeptidetig00000065_pilon 11380..12226 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4706.t1.start1Ggra4706.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000065_pilon 11380..11382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4706.t1.CDS1Ggra4706.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000065_pilon 11380..11465 +
Ggra4706.t1.CDS2Ggra4706.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000065_pilon 11557..12226 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4706.t1.exon1Ggra4706.t1.exon1Gracilaria gracilis GNS1m maleexontig00000065_pilon 11380..11465 +
Ggra4706.t1.exon2Ggra4706.t1.exon2Gracilaria gracilis GNS1m maleexontig00000065_pilon 11557..12226 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4706.t1.intron1Ggra4706.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000065_pilon 11466..11556 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra4706.t1.stop1Ggra4706.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000065_pilon 12224..12226 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra4706.t1 ID=Ggra4706.t1|Name=Ggra4706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=252bp
MDMLRALDTHPLIRDFTKQFNRAKRSARPFSKKKLAIPRMFALLFIAIST
SATFVGCAMVFLTKWEKKGAQLLIFATVYQQMVYGRTLTYHQREPRFSHS
QHVPVWHAYAVDEWDSESRMDCQRYRGLPDAPDKDGKRHSIALMTRLLLG
LLTIEMFDVIGWGWAVVIVPVACAVVVGYKTDFMGVLLMIFYIIATVTSK
QFWMIDGSAHVYAAFKRDVMRFEFLQTISIMSGLVMLIMSGPGALFAGRE
A*
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spliced messenger RNA

>Ggra4706.t1 ID=Ggra4706.t1|Name=Ggra4706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=756bp|location=Sequence derived from alignment at tig00000065_pilon:11380..12226+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACATGCTACGGGCTCTTGATACGCATCCACTCATTCGAGACTTCAC
AAAACAGTTCAACCGTGCGAAGAGAAGCGCCCGACCTTTTTCAAAAAAGA
AACTGGCCATTCCAAGGATGTTTGCCCTTCTATTCATTGCCATATCGACG
TCCGCCACATTCGTAGGATGCGCGATGGTGTTTTTGACCAAATGGGAGAA
AAAGGGGGCTCAGTTACTAATCTTCGCCACCGTGTATCAACAGATGGTCT
ACGGAAGGACACTCACCTATCACCAGCGGGAACCTAGGTTTTCTCATTCG
CAACATGTGCCTGTGTGGCACGCTTATGCTGTTGATGAGTGGGACAGCGA
ATCAAGGATGGACTGCCAGCGCTACCGGGGACTTCCAGACGCGCCCGATA
AAGACGGAAAACGGCACAGCATAGCGCTAATGACAAGGCTGCTGCTAGGT
CTGCTCACGATAGAGATGTTCGATGTGATTGGCTGGGGGTGGGCAGTGGT
GATCGTGCCGGTGGCGTGCGCCGTGGTGGTTGGCTACAAGACTGACTTCA
TGGGCGTGCTATTGATGATATTCTACATCATAGCTACGGTGACGAGCAAA
CAGTTTTGGATGATTGACGGATCGGCTCACGTGTATGCGGCGTTCAAGCG
CGACGTAATGCGCTTCGAGTTTCTGCAGACTATTTCCATCATGAGCGGGC
TGGTGATGTTGATCATGAGCGGCCCGGGCGCTCTTTTCGCTGGACGAGAA
GCTTAA
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protein sequence of Ggra4706.t1

>Ggra4706.t1 ID=Ggra4706.t1|Name=Ggra4706.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=252bp
MDMLRALDTHPLIRDFTKQFNRAKRSARPFSKKKLAIPRMFALLFIAIST
SATFVGCAMVFLTKWEKKGAQLLIFATVYQQMVYGRTLTYHQREPRFSHS
QHVPVWHAYAVDEWDSESRMDCQRYRGLPDAPDKDGKRHSIALMTRLLLG
LLTIEMFDVIGWGWAVVIVPVACAVVVGYKTDFMGVLLMIFYIIATVTSK
QFWMIDGSAHVYAAFKRDVMRFEFLQTISIMSGLVMLIMSGPGALFAGRE
A*
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mRNA from alignment at tig00000065_pilon:11380..12226+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra4706.t1 ID=Ggra4706.t1|Name=Ggra4706.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=847bp|location=Sequence derived from alignment at tig00000065_pilon:11380..12226+ (Gracilaria gracilis GNS1m male)
ATGGACATGCTACGGGCTCTTGATACGCATCCACTCATTCGAGACTTCAC
AAAACAGTTCAACCGTGCGAAGAGAAGCGCCCGACCGTATGTTCCTTTCA
TCACTCGCGCCTTACTAGTGCTGGCATTTGCGGAAGATGCAGCACACACG
CTCATCGAGTATCGCTCACAAGTGCAGTTTTTCAAAAAAGAAACTGGCCA
TTCCAAGGATGTTTGCCCTTCTATTCATTGCCATATCGACGTCCGCCACA
TTCGTAGGATGCGCGATGGTGTTTTTGACCAAATGGGAGAAAAAGGGGGC
TCAGTTACTAATCTTCGCCACCGTGTATCAACAGATGGTCTACGGAAGGA
CACTCACCTATCACCAGCGGGAACCTAGGTTTTCTCATTCGCAACATGTG
CCTGTGTGGCACGCTTATGCTGTTGATGAGTGGGACAGCGAATCAAGGAT
GGACTGCCAGCGCTACCGGGGACTTCCAGACGCGCCCGATAAAGACGGAA
AACGGCACAGCATAGCGCTAATGACAAGGCTGCTGCTAGGTCTGCTCACG
ATAGAGATGTTCGATGTGATTGGCTGGGGGTGGGCAGTGGTGATCGTGCC
GGTGGCGTGCGCCGTGGTGGTTGGCTACAAGACTGACTTCATGGGCGTGC
TATTGATGATATTCTACATCATAGCTACGGTGACGAGCAAACAGTTTTGG
ATGATTGACGGATCGGCTCACGTGTATGCGGCGTTCAAGCGCGACGTAAT
GCGCTTCGAGTTTCTGCAGACTATTTCCATCATGAGCGGGCTGGTGATGT
TGATCATGAGCGGCCCGGGCGCTCTTTTCGCTGGACGAGAAGCTTAA
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Coding sequence (CDS) from alignment at tig00000065_pilon:11380..12226+

>Ggra4706.t1 ID=Ggra4706.t1|Name=Ggra4706.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=756bp|location=Sequence derived from alignment at tig00000065_pilon:11380..12226+ (Gracilaria gracilis GNS1m male)
ATGGACATGCTACGGGCTCTTGATACGCATCCACTCATTCGAGACTTCAC
AAAACAGTTCAACCGTGCGAAGAGAAGCGCCCGACCTTTTTCAAAAAAGA
AACTGGCCATTCCAAGGATGTTTGCCCTTCTATTCATTGCCATATCGACG
TCCGCCACATTCGTAGGATGCGCGATGGTGTTTTTGACCAAATGGGAGAA
AAAGGGGGCTCAGTTACTAATCTTCGCCACCGTGTATCAACAGATGGTCT
ACGGAAGGACACTCACCTATCACCAGCGGGAACCTAGGTTTTCTCATTCG
CAACATGTGCCTGTGTGGCACGCTTATGCTGTTGATGAGTGGGACAGCGA
ATCAAGGATGGACTGCCAGCGCTACCGGGGACTTCCAGACGCGCCCGATA
AAGACGGAAAACGGCACAGCATAGCGCTAATGACAAGGCTGCTGCTAGGT
CTGCTCACGATAGAGATGTTCGATGTGATTGGCTGGGGGTGGGCAGTGGT
GATCGTGCCGGTGGCGTGCGCCGTGGTGGTTGGCTACAAGACTGACTTCA
TGGGCGTGCTATTGATGATATTCTACATCATAGCTACGGTGACGAGCAAA
CAGTTTTGGATGATTGACGGATCGGCTCACGTGTATGCGGCGTTCAAGCG
CGACGTAATGCGCTTCGAGTTTCTGCAGACTATTTCCATCATGAGCGGGC
TGGTGATGTTGATCATGAGCGGCCCGGGCGCTCTTTTCGCTGGACGAGAA
GCTTAA
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