Ggra3544.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra3544.t1
Unique Name	Ggra3544.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	210

Homology

[Close]

BLAST of Ggra3544.t1 vs. uniprot
Match: A0A2V3J136 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J136_9FLOR)

HSP 1 Score: 214 bits (544), Expect = 4.270e-66
Identity = 120/163 (73.62%), Postives = 138/163 (84.66%), Query Frame = 0

Query:   39 MRDMQLQTQQLTKVREAARESNNESLRRASELKQLRSTIQTLTNQLQQATDAKQALKLSLRAAQDVMSELRRKLARSEARCKKLQADVKAASLTRWELLSKLHTDTTQRLAAIHQLRQPQNPPLLRDASSPPSRQLSEHSISPMPMPKSPSESCLLSLRPDLT 201
            MRDMQ QTQQLT VREAARES  ESLRR SELK+LR TI++LT  L  +   KQALK S+R +Q+V+++LRR+LARSEARC KL+A+V AASLTRWELLSKLH DTTQRLAAI+ LRQPQN  LLRD  SPPSRQ SEHS+SP+ MPKSPSESCLLSL+PDL+
Sbjct:    1 MRDMQQQTQQLTSVREAARESKKESLRRVSELKELRCTIESLTKALHASASEKQALKESIRGSQEVVTDLRRRLARSEARCTKLEAEVAAASLTRWELLSKLHNDTTQRLAAINCLRQPQNGALLRDVGSPPSRQFSEHSLSPIAMPKSPSESCLLSLKPDLS 163

[Close]

BLAST of Ggra3544.t1 vs. uniprot
Match: R7QHW5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHW5_CHOCR)

HSP 1 Score: 102 bits (255), Expect = 8.300e-22
Identity = 78/208 (37.50%), Postives = 112/208 (53.85%), Query Frame = 0

Query:    3 WTWIPIVLCCGALLCFTLVVRVRSSIQKYADDLRNVMRDMQLQTQQLTKVREAARESNNESLRRASELKQLRSTIQTLTNQLQQATDAKQALKLSLRAAQDVMSELRRKLARSEARCKKLQADVKAASLTRWELLSKLHTDTTQRLAAIHQLRQPQ--NPPLLRDASSPPSRQLSEHSISPMPMPKSPSESCLLSLRPDLTCDHDDHD 208
            W+W+   +    LL F    R RS++Q+YA+D                 V EAA+ES  +S RR  EL+ LR  + +L+  +   TD + A +  +   +  + +L  KLARS+AR   L+ ++ AA L + ELLSKL  D T+RL+A++ LR P      L+   S  P    SE ++SPM + KSPSES LL+L PDL    DD D
Sbjct:    3 WSWLLWQVVFAFLLSFFATRRSRSAMQRYANDXXXXXXXXXXXXXXXXXVEEAAKESTKQSTRRTKELQTLRDNVASLSATVDSLTDERDAAREKMAFLRVRLDDLSTKLARSDARRDILEKEIAAARLVKLELLSKLRIDETERLSALNSLRHPAATRASLVLQGSPGPHSISSETALSPMAVAKSPSESMLLALHPDLDISDDDED 210

The following BLAST results are available for this feature:

BLAST of Ggra3544.t1 vs. uniprot

BLAST of Ggra3544.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J136	4.270e-66	73.62	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QHW5	8.300e-22	37.50	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..62
None	No IPR available	COILS	Coil	Coil	coord: 70..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..209
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..185
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 27..209
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..26
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 22..26
None	No IPR available	TMHMM	TMhelix		coord: 5..22

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000059_pilon	contig	tig00000059_pilon:896769..897611 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3544.t1	Ggra3544.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000059_pilon 896769..897611 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra3544.t1 ID=Ggra3544.t1|Name=Ggra3544.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=210bp
MFWTWIPIVLCCGALLCFTLVVRVRSSIQKYADDLRNVMRDMQLQTQQLT
KVREAARESNNESLRRASELKQLRSTIQTLTNQLQQATDAKQALKLSLRA
AQDVMSELRRKLARSEARCKKLQADVKAASLTRWELLSKLHTDTTQRLAA
IHQLRQPQNPPLLRDASSPPSRQLSEHSISPMPMPKSPSESCLLSLRPDL
TCDHDDHDG*