Ggra3544.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra3544.t1
Unique NameGgra3544.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length210
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000059_piloncontigtig00000059_pilon:896769..897611 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3544Ggra3544Gracilaria gracilis GNS1m malegenetig00000059_pilon 896769..897611 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3544.t1Ggra3544.t1Gracilaria gracilis GNS1m malepolypeptidetig00000059_pilon 896769..897611 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3544.t1.start1Ggra3544.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000059_pilon 896769..896771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3544.t1.CDS1Ggra3544.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000059_pilon 896769..896930 +
Ggra3544.t1.CDS2Ggra3544.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000059_pilon 897043..897483 +
Ggra3544.t1.CDS3Ggra3544.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000059_pilon 897585..897611 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3544.t1.exon1Ggra3544.t1.exon1Gracilaria gracilis GNS1m maleexontig00000059_pilon 896769..896930 +
Ggra3544.t1.exon2Ggra3544.t1.exon2Gracilaria gracilis GNS1m maleexontig00000059_pilon 897043..897483 +
Ggra3544.t1.exon3Ggra3544.t1.exon3Gracilaria gracilis GNS1m maleexontig00000059_pilon 897585..897611 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3544.t1.intron1Ggra3544.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000059_pilon 896931..897042 +
Ggra3544.t1.intron2Ggra3544.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000059_pilon 897484..897584 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra3544.t1.stop1Ggra3544.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000059_pilon 897609..897611 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra3544.t1 ID=Ggra3544.t1|Name=Ggra3544.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=210bp
MFWTWIPIVLCCGALLCFTLVVRVRSSIQKYADDLRNVMRDMQLQTQQLT
KVREAARESNNESLRRASELKQLRSTIQTLTNQLQQATDAKQALKLSLRA
AQDVMSELRRKLARSEARCKKLQADVKAASLTRWELLSKLHTDTTQRLAA
IHQLRQPQNPPLLRDASSPPSRQLSEHSISPMPMPKSPSESCLLSLRPDL
TCDHDDHDG*
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spliced messenger RNA

>Ggra3544.t1 ID=Ggra3544.t1|Name=Ggra3544.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=630bp|location=Sequence derived from alignment at tig00000059_pilon:896769..897611+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCTGGACTTGGATTCCGATCGTGTTGTGTTGTGGCGCGCTGCTGTG
CTTCACCTTGGTGGTACGCGTGCGCTCGTCCATTCAGAAATACGCCGACG
ACCTTCGTAACGTGATGCGCGACATGCAGTTGCAGACGCAGCAACTCACA
AAAGTGAGAGAGGCGGCTCGAGAATCGAACAACGAATCGCTGCGAAGAGC
TTCCGAGTTGAAGCAACTGCGTTCCACAATACAAACGCTCACAAACCAAT
TGCAGCAAGCAACGGACGCCAAACAGGCGTTGAAACTTTCACTACGCGCC
GCGCAAGACGTGATGAGCGAGCTGCGTAGGAAGCTAGCGCGCTCCGAAGC
GCGCTGCAAAAAGCTGCAAGCCGACGTCAAGGCAGCCTCTCTCACCAGGT
GGGAACTGCTAAGCAAGCTGCACACCGACACCACGCAACGTCTGGCCGCA
ATCCACCAGCTGCGACAACCACAAAACCCGCCGCTGTTAAGAGACGCCAG
CTCACCGCCGTCGCGACAGCTGTCGGAGCACTCCATTTCGCCCATGCCAA
TGCCAAAAAGCCCCAGCGAGTCGTGTCTGCTGTCGCTGCGCCCCGATCTC
ACCTGCGACCATGACGACCACGACGGGTGA
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protein sequence of Ggra3544.t1

>Ggra3544.t1 ID=Ggra3544.t1|Name=Ggra3544.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=210bp
MFWTWIPIVLCCGALLCFTLVVRVRSSIQKYADDLRNVMRDMQLQTQQLT
KVREAARESNNESLRRASELKQLRSTIQTLTNQLQQATDAKQALKLSLRA
AQDVMSELRRKLARSEARCKKLQADVKAASLTRWELLSKLHTDTTQRLAA
IHQLRQPQNPPLLRDASSPPSRQLSEHSISPMPMPKSPSESCLLSLRPDL
TCDHDDHDG*
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mRNA from alignment at tig00000059_pilon:896769..897611+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra3544.t1 ID=Ggra3544.t1|Name=Ggra3544.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=843bp|location=Sequence derived from alignment at tig00000059_pilon:896769..897611+ (Gracilaria gracilis GNS1m male)
ATGTTCTGGACTTGGATTCCGATCGTGTTGTGTTGTGGCGCGCTGCTGTG
CTTCACCTTGGTGGTACGCGTGCGCTCGTCCATTCAGAAATACGCCGACG
ACCTTCGTAACGTGATGCGCGACATGCAGTTGCAGACGCAGCAACTCACA
AAAGTGAGAGAGGTAACTTATATATATATATATCACACTACACAACACAA
ATACAAGTAGTGAATGCTAACTGACGCGCAAAACCGTGTGTGTAACCGAC
CGTACGCGCTGTATGTGCGCACAGGCGGCTCGAGAATCGAACAACGAATC
GCTGCGAAGAGCTTCCGAGTTGAAGCAACTGCGTTCCACAATACAAACGC
TCACAAACCAATTGCAGCAAGCAACGGACGCCAAACAGGCGTTGAAACTT
TCACTACGCGCCGCGCAAGACGTGATGAGCGAGCTGCGTAGGAAGCTAGC
GCGCTCCGAAGCGCGCTGCAAAAAGCTGCAAGCCGACGTCAAGGCAGCCT
CTCTCACCAGGTGGGAACTGCTAAGCAAGCTGCACACCGACACCACGCAA
CGTCTGGCCGCAATCCACCAGCTGCGACAACCACAAAACCCGCCGCTGTT
AAGAGACGCCAGCTCACCGCCGTCGCGACAGCTGTCGGAGCACTCCATTT
CGCCCATGCCAATGCCAAAAAGCCCCAGCGAGTCGTGTCTGCTGTCGCTG
CGCCCCGATCTCACCGTGGGcgacgacgacgaccacgacgacgacgacga
cgacgacgacTGGCACTTGGACGAAATAGCGCTCGGACGCAGCGCATTGA
CACGCGGCGCAGGCAGTGCGACCATGACGACCACGACGGGTGA
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Coding sequence (CDS) from alignment at tig00000059_pilon:896769..897611+

>Ggra3544.t1 ID=Ggra3544.t1|Name=Ggra3544.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=630bp|location=Sequence derived from alignment at tig00000059_pilon:896769..897611+ (Gracilaria gracilis GNS1m male)
ATGTTCTGGACTTGGATTCCGATCGTGTTGTGTTGTGGCGCGCTGCTGTG
CTTCACCTTGGTGGTACGCGTGCGCTCGTCCATTCAGAAATACGCCGACG
ACCTTCGTAACGTGATGCGCGACATGCAGTTGCAGACGCAGCAACTCACA
AAAGTGAGAGAGGCGGCTCGAGAATCGAACAACGAATCGCTGCGAAGAGC
TTCCGAGTTGAAGCAACTGCGTTCCACAATACAAACGCTCACAAACCAAT
TGCAGCAAGCAACGGACGCCAAACAGGCGTTGAAACTTTCACTACGCGCC
GCGCAAGACGTGATGAGCGAGCTGCGTAGGAAGCTAGCGCGCTCCGAAGC
GCGCTGCAAAAAGCTGCAAGCCGACGTCAAGGCAGCCTCTCTCACCAGGT
GGGAACTGCTAAGCAAGCTGCACACCGACACCACGCAACGTCTGGCCGCA
ATCCACCAGCTGCGACAACCACAAAACCCGCCGCTGTTAAGAGACGCCAG
CTCACCGCCGTCGCGACAGCTGTCGGAGCACTCCATTTCGCCCATGCCAA
TGCCAAAAAGCCCCAGCGAGTCGTGTCTGCTGTCGCTGCGCCCCGATCTC
ACCTGCGACCATGACGACCACGACGGGTGA
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