Ggra6839.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6839.t1
Unique NameGgra6839.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length877
Homology
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BLAST of Ggra6839.t1 vs. uniprot
Match: A0A2V3IPX5 (CHD3-type chromatin-remodeling factor PICKLE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPX5_9FLOR)

HSP 1 Score: 363 bits (933), Expect = 8.250e-110
Identity = 194/368 (52.72%), Postives = 238/368 (64.67%), Query Frame = 0 
Query:  396 QPVRAIPGHANLP-------------PLSHDDLINVRMAKPADGGDWDRFVFFKHRPQRHDFGKNCYLSDYSPFAAVAPAVANEPPCTLCAVCGGGSRLVRCSGCVCAFHAKCLAPYQVTAAPWYCKGCRSAGLPNDNPTPIPDPPSNLSLAAQALHRAIIDAREGNPIDLVLHPSLLTMFRGQYAGRDWLQCFSCKRRRVVPNGILSESVQIPFECSAMFWLPPDQRSCSSQKDPNTQRIEQYINQQAELRGERRKALLE-SFGDGSDDDSEYSLQSDPSNVKLSARPSVPRPEQPNNPVANHTVIPNGI--SKQDAAPKTVPPPQSSTERVIEHDQAASAQNPTHKDSTTNGFAPMEVDTIVPKEP 747
            QPV+  P H + P             PL+HD LIN+   K  DG DWDR VFFKHRPQR+DFG + Y+SD+SPF+AV   V    P ++CAVCGG   L  C+GCVCAFHAKC++PY VT APW+CKGCRSAG+P++   PIPDPP+NL+ AAQ LHR I+DA+EGNP+DL LHP LL MFR QY G DWLQC  CKRRR+V  G+LSESV +PF C   FWLP   R C SQ DP TQR E++IN+QA LR  RRKAL E  FGDGSDD+     +S P NVKLSA+P   R  + +      T +PNG+  S      + +P P   ++          A+NP    +T+  F  MEVD+IV KEP
Sbjct:  316 QPVQPSPVHGSSPDHAVQSTRSPQVAPLTHDHLINIWAPKVMDGSDWDRLVFFKHRPQRYDFGDSAYISDFSPFSAVVAEVGGSSPSSVCAVCGGAYNLTPCNGCVCAFHAKCVSPYPVTTAPWFCKGCRSAGVPDNKVPPIPDPPTNLTGAAQPLHRPIVDAQEGNPMDLTLHPGLLKMFRDQYGGHDWLQCSICKRRRLVMKGVLSESVDLPFNCENAFWLPQSDRHCQSQMDPATQRAEKFINEQAALRPVRRKALFEYGFGDGSDDEDTIIKRS-PKNVKLSAKPLCTRSNKED------THVPNGVPASTHTRPSEPIPDPMQISDN-------NGAENPRIV-NTSRTFDEMEVDSIV-KEP 667
The following BLAST results are available for this feature:
BLAST of Ggra6839.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IPX58.250e-11052.72CHD3-type chromatin-remodeling factor PICKLE n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 623..643
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 121..161
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 212..239
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..293
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 761..811
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 307..329
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 331..375
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 700..736
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 638..816
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..404
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 189..211
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 173..188
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 471..512
e-value: 6.9E-6
score: 35.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 462..515
e-value: 1.2E-8
score: 36.6
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 469..514
score: 9.2408
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 467..514

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:644138..646768 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6839.t1Ggra6839.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 644138..646768 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6839.t1 ID=Ggra6839.t1|Name=Ggra6839.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=877bp
MSAAFGTKQISADQHASLAAPARDRSITVDDFIEQPAQADPESDSDADEN
EPAVTPAQKRPRSSIRRSSSALSFESEAEEDEEQPPAKRQRSDPPVAPSS
SSRVPSAAPAPSPPHIQLPTSPPQVTSRGTGFFSGHSPLSSKTKSLTAFF
NVTNARKQPNPLPQPLNSPKLTTSIPPPSISSHVFPRSPRSPNAPPLSVD
PSAPSNPTPPRTTAPVAQRGSASPAPSPASPQEGKSTDTPPVKHSPAAVV
SSTPSVNRTNSRVDADTTVSPNKRSSPPIRRVSISSKVPEETTTSLVLAD
PKPIATSQKAPSPPAPKPPQLPPPKSTPAAPVTAFASTANYQHSGGRPPT
GASANQTPSSPQPNSPDTIPSVQERNSPMHVPVPPLVPPTGSNPSQPVRA
IPGHANLPPLSHDDLINVRMAKPADGGDWDRFVFFKHRPQRHDFGKNCYL
SDYSPFAAVAPAVANEPPCTLCAVCGGGSRLVRCSGCVCAFHAKCLAPYQ
VTAAPWYCKGCRSAGLPNDNPTPIPDPPSNLSLAAQALHRAIIDAREGNP
IDLVLHPSLLTMFRGQYAGRDWLQCFSCKRRRVVPNGILSESVQIPFECS
AMFWLPPDQRSCSSQKDPNTQRIEQYINQQAELRGERRKALLESFGDGSD
DDSEYSLQSDPSNVKLSARPSVPRPEQPNNPVANHTVIPNGISKQDAAPK
TVPPPQSSTERVIEHDQAASAQNPTHKDSTTNGFAPMEVDTIVPKEPNHS
DAKPAPAPTVNAVASITTTQQPSATQAPLTSTSQETSHAGTPQTKTESAK
QEDSIGGSTTKPEDVEQELLMYIAELELDEETEDILTDLALSNDKTLTQI
YIAFRSNKDRFKRQAVRYAKRKAKTS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD