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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 4098.XP_009621195.1 |
| PFAMs | Jas,PHD |
| Max annot lvl | 35493|Streptophyta |
| Evalue | 0.000441 |
| EggNOG OGs | 28MT8@1|root,2QUBI@2759|Eukaryota,37T9U@33090|Viridiplantae,3GGGU@35493|Streptophyta,44GNT@71274|asterids |
| Description | TPL-binding domain in jasmonate signalling |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra6839.t1.stop1 | Ggra6839.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000056_pilon 644138..644140 - |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra6839.t1.start1 | Ggra6839.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000056_pilon 646766..646768 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra6839.t1 ID=Ggra6839.t1|Name=Ggra6839.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=877bp MSAAFGTKQISADQHASLAAPARDRSITVDDFIEQPAQADPESDSDADEN EPAVTPAQKRPRSSIRRSSSALSFESEAEEDEEQPPAKRQRSDPPVAPSS SSRVPSAAPAPSPPHIQLPTSPPQVTSRGTGFFSGHSPLSSKTKSLTAFF NVTNARKQPNPLPQPLNSPKLTTSIPPPSISSHVFPRSPRSPNAPPLSVD PSAPSNPTPPRTTAPVAQRGSASPAPSPASPQEGKSTDTPPVKHSPAAVV SSTPSVNRTNSRVDADTTVSPNKRSSPPIRRVSISSKVPEETTTSLVLAD PKPIATSQKAPSPPAPKPPQLPPPKSTPAAPVTAFASTANYQHSGGRPPT GASANQTPSSPQPNSPDTIPSVQERNSPMHVPVPPLVPPTGSNPSQPVRA IPGHANLPPLSHDDLINVRMAKPADGGDWDRFVFFKHRPQRHDFGKNCYL SDYSPFAAVAPAVANEPPCTLCAVCGGGSRLVRCSGCVCAFHAKCLAPYQ VTAAPWYCKGCRSAGLPNDNPTPIPDPPSNLSLAAQALHRAIIDAREGNP IDLVLHPSLLTMFRGQYAGRDWLQCFSCKRRRVVPNGILSESVQIPFECS AMFWLPPDQRSCSSQKDPNTQRIEQYINQQAELRGERRKALLESFGDGSD DDSEYSLQSDPSNVKLSARPSVPRPEQPNNPVANHTVIPNGISKQDAAPK TVPPPQSSTERVIEHDQAASAQNPTHKDSTTNGFAPMEVDTIVPKEPNHS DAKPAPAPTVNAVASITTTQQPSATQAPLTSTSQETSHAGTPQTKTESAK QEDSIGGSTTKPEDVEQELLMYIAELELDEETEDILTDLALSNDKTLTQI YIAFRSNKDRFKRQAVRYAKRKAKTS* back to topspliced messenger RNA >Ggra6839.t1 ID=Ggra6839.t1|Name=Ggra6839.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2631bp|location=Sequence derived from alignment at tig00000056_pilon:644138..646768- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTGCAGCCTTCGGAACCAAGCAAATATCCGCCGACCAACACGCATC GCTCGCAGCTCCTGCGCGAGACCGTTCCATCACCGTCGACGATTTCATTG AACAGCCGGCGCAAGCCGATCCGGAATCCGACTCTGACGCGGACGAGAAC GAGCCTGCTGTCACACCCGCCCAGAAGAGACCTCGTTCTTCTATTCGGCG CTCCAGCTCGGCGCTTTCTTTCGAGAGCGAAGCTGAAGAAGACGAGGAAC AGCCGCCCGCGAAGAGACAGCGTTCCGACCCCCCCGTCGCGCCGTCTTCT TCATCACGTGTCCCATCGGCGGCGCCAGCTCCCAGCCCCCCTCATATCCA ACTTCCAACATCCCCACCCCAAGTCACCTCACGAGGCACGGGCTTTTTCT CGGGTCACTCGCCTCTCTCCTCCAAGACGAAGTCTCTGACTGCCTTCTTC AACGTTACCAACGCGAGGAAGCAGCCGAACCCGCTTCCGCAGCCTTTGAA TTCTCCGAAGCTCACAACCAGCATACCGCCTCCCTCTATTTCATCTCACG TGTTCCCGAGGTCACCGAGGTCACCGAACGCCCCGCCCTTATCGGTTGAT CCGTCTGCTCCTTCAAACCCCACTCCACCACGTACCACCGCTCCCGTCGC ACAGCGGGGGTCGGCTTCCCCCGCACCAAGTCCGGCCTCGCCCCAGGAAG GAAAATCGACCGACACGCCTCCTGTGAAACATTCTCCTGCGGCCGTAGTA AGTTCTACACCGTCTGTTAACAGGACTAATTCTCGAGTGGATGCCGATAC CACTGTTTCACCCAACAAACGCTCATCTCCACCTATCCGTCGTGTGTCGA TATCTTCTAAGGTCCCTGAAGAGACGACTACTAGCTTGGTCCTCGCGGAC CCTAAACCCATTGCGACTTCGCAAAAGGCTCCGAGTCCGCCTGCCCCCAA ACCCCCCCAACTACCGCCGCCAAAGTCTACGCCTGCTGCTCCGGTTACCG CCTTTGCCTCCACAGCCAATTACCAGCATTCAGGAGGAAGGCCTCCTACC GGAGCCTCTGCTAACCAGACGCCATCGTCCCCGCAGCCCAATTCGCCGGA TACGATACCGTCCGTTCAGGAGCGCAACTCCCCCATGCACGTTCCTGTGC CACCATTGGTACCACCAACTGGCTCTAACCCCTCTCAGCCAGTAAGAGCG ATTCCCGGGCATGCTAACTTACCACCACTGTCACACGACGACCTGATCAA CGTTCGCATGGCTAAGCCTGCGGACGGTGGGGATTGGGATCGCTTCGTTT TTTTCAAGCACAGGCCGCAACGCCATGACTTCGGAAAGAACTGCTATCTT TCTGACTACTCGCCTTTTGCGGCGGTGGCCCCTGCGGTGGCGAACGAACC GCCTTGCACACTTTGTGCGGTGTGCGGTGGAGGTTCTCGTCTCGTACGTT GCAGTGGATGTGTTTGCGCTTTTCACGCGAAGTGTTTGGCACCGTATCAG GTCACAGCCGCTCCATGGTATTGCAAAGGCTGTCGCTCAGCTGGATTACC GAATGACAACCCCACTCCGATACCGGATCCCCCTTCAAATCTTTCTCTCG CTGCCCAGGCATTACATCGCGCCATCATCGATGCAAGAGAAGGTAACCCG ATCGATTTAGTGTTGCATCCTTCGTTGCTGACTATGTTCCGCGGTCAATA CGCTGGAAGAGATTGGCTCCAATGTTTTTCATGCAAGAGACGAAGAGTGG TTCCCAATGGAATACTTAGTGAGTCTGTTCAAATCCCTTTTGAATGCAGC GCGATGTTTTGGTTGCCTCCGGACCAACGGAGCTGCTCGTCACAAAAGGA CCCTAATACACAGCGCATTGAGCAGTACATTAATCAACAAGCGGAGCTGC GTGGTGAACGTAGAAAGGCTCTTCTGGAAAGCTTTGGTGACGGTTCCGAC GATGACAGCGAGTATTCGTTACAGAGTGACCCATCAAACGTGAAACTCTC TGCAAGACCGAGTGTTCCTCGCCCTGAACAGCCAAATAACCCAGTTGCTA ATCATACGGTGATTCCAAACGGAATTTCCAAGCAGGATGCTGCTCCGAAG ACTGTACCGCCTCCTCAGTCTAGCACGGAGCGCGTTATTGAGCATGATCA AGCCGCAAGTGCTCAAAATCCAACGCACAAAGATTCTACAACAAATGGAT TCGCCCCAATGGAAGTCGACACTATCGTTCCAAAGGAACCCAACCATTCC GATGCGAAACCGGCACCAGCACCCACCGTGAATGCTGTGGCAAGTATAAC AACAACACAGCAACCAAGTGCTACTCAGGCCCCGCTAACCTCGACAAGCC AGGAGACAAGCCATGCGGGTACACCCCAGACCAAGACCGAGTCGGCCAAA CAAGAAGACAGCATTGGTGGCTCTACTACAAAACCAGAGGATGTAGAGCA GGAATTGCTCATGTATATAGCGGAGTTGGAACTTGATGAAGAGACGGAAG ATATATTAACGGACCTAGCTTTGAGTAATGACAAGACTTTGACTCAAATT TACATCGCTTTTCGATCGAATAAGGATCGATTCAAACGACAAGCTGTGCG TTATGCGAAACGAAAGGCCAAGACATCTTGA back to topprotein sequence of Ggra6839.t1 >Ggra6839.t1 ID=Ggra6839.t1|Name=Ggra6839.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=877bp
MSAAFGTKQISADQHASLAAPARDRSITVDDFIEQPAQADPESDSDADEN EPAVTPAQKRPRSSIRRSSSALSFESEAEEDEEQPPAKRQRSDPPVAPSS SSRVPSAAPAPSPPHIQLPTSPPQVTSRGTGFFSGHSPLSSKTKSLTAFF NVTNARKQPNPLPQPLNSPKLTTSIPPPSISSHVFPRSPRSPNAPPLSVD PSAPSNPTPPRTTAPVAQRGSASPAPSPASPQEGKSTDTPPVKHSPAAVV SSTPSVNRTNSRVDADTTVSPNKRSSPPIRRVSISSKVPEETTTSLVLAD PKPIATSQKAPSPPAPKPPQLPPPKSTPAAPVTAFASTANYQHSGGRPPT GASANQTPSSPQPNSPDTIPSVQERNSPMHVPVPPLVPPTGSNPSQPVRA IPGHANLPPLSHDDLINVRMAKPADGGDWDRFVFFKHRPQRHDFGKNCYL SDYSPFAAVAPAVANEPPCTLCAVCGGGSRLVRCSGCVCAFHAKCLAPYQ VTAAPWYCKGCRSAGLPNDNPTPIPDPPSNLSLAAQALHRAIIDAREGNP IDLVLHPSLLTMFRGQYAGRDWLQCFSCKRRRVVPNGILSESVQIPFECS AMFWLPPDQRSCSSQKDPNTQRIEQYINQQAELRGERRKALLESFGDGSD DDSEYSLQSDPSNVKLSARPSVPRPEQPNNPVANHTVIPNGISKQDAAPK TVPPPQSSTERVIEHDQAASAQNPTHKDSTTNGFAPMEVDTIVPKEPNHS DAKPAPAPTVNAVASITTTQQPSATQAPLTSTSQETSHAGTPQTKTESAK QEDSIGGSTTKPEDVEQELLMYIAELELDEETEDILTDLALSNDKTLTQI YIAFRSNKDRFKRQAVRYAKRKAKTS* back to topmRNA from alignment at tig00000056_pilon:644138..646768- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra6839.t1 ID=Ggra6839.t1|Name=Ggra6839.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2631bp|location=Sequence derived from alignment at tig00000056_pilon:644138..646768- (Gracilaria gracilis GNS1m male) ATGTCTGCAGCCTTCGGAACCAAGCAAATATCCGCCGACCAACACGCATC
GCTCGCAGCTCCTGCGCGAGACCGTTCCATCACCGTCGACGATTTCATTG
AACAGCCGGCGCAAGCCGATCCGGAATCCGACTCTGACGCGGACGAGAAC
GAGCCTGCTGTCACACCCGCCCAGAAGAGACCTCGTTCTTCTATTCGGCG
CTCCAGCTCGGCGCTTTCTTTCGAGAGCGAAGCTGAAGAAGACGAGGAAC
AGCCGCCCGCGAAGAGACAGCGTTCCGACCCCCCCGTCGCGCCGTCTTCT
TCATCACGTGTCCCATCGGCGGCGCCAGCTCCCAGCCCCCCTCATATCCA
ACTTCCAACATCCCCACCCCAAGTCACCTCACGAGGCACGGGCTTTTTCT
CGGGTCACTCGCCTCTCTCCTCCAAGACGAAGTCTCTGACTGCCTTCTTC
AACGTTACCAACGCGAGGAAGCAGCCGAACCCGCTTCCGCAGCCTTTGAA
TTCTCCGAAGCTCACAACCAGCATACCGCCTCCCTCTATTTCATCTCACG
TGTTCCCGAGGTCACCGAGGTCACCGAACGCCCCGCCCTTATCGGTTGAT
CCGTCTGCTCCTTCAAACCCCACTCCACCACGTACCACCGCTCCCGTCGC
ACAGCGGGGGTCGGCTTCCCCCGCACCAAGTCCGGCCTCGCCCCAGGAAG
GAAAATCGACCGACACGCCTCCTGTGAAACATTCTCCTGCGGCCGTAGTA
AGTTCTACACCGTCTGTTAACAGGACTAATTCTCGAGTGGATGCCGATAC
CACTGTTTCACCCAACAAACGCTCATCTCCACCTATCCGTCGTGTGTCGA
TATCTTCTAAGGTCCCTGAAGAGACGACTACTAGCTTGGTCCTCGCGGAC
CCTAAACCCATTGCGACTTCGCAAAAGGCTCCGAGTCCGCCTGCCCCCAA
ACCCCCCCAACTACCGCCGCCAAAGTCTACGCCTGCTGCTCCGGTTACCG
CCTTTGCCTCCACAGCCAATTACCAGCATTCAGGAGGAAGGCCTCCTACC
GGAGCCTCTGCTAACCAGACGCCATCGTCCCCGCAGCCCAATTCGCCGGA
TACGATACCGTCCGTTCAGGAGCGCAACTCCCCCATGCACGTTCCTGTGC
CACCATTGGTACCACCAACTGGCTCTAACCCCTCTCAGCCAGTAAGAGCG
ATTCCCGGGCATGCTAACTTACCACCACTGTCACACGACGACCTGATCAA
CGTTCGCATGGCTAAGCCTGCGGACGGTGGGGATTGGGATCGCTTCGTTT
TTTTCAAGCACAGGCCGCAACGCCATGACTTCGGAAAGAACTGCTATCTT
TCTGACTACTCGCCTTTTGCGGCGGTGGCCCCTGCGGTGGCGAACGAACC
GCCTTGCACACTTTGTGCGGTGTGCGGTGGAGGTTCTCGTCTCGTACGTT
GCAGTGGATGTGTTTGCGCTTTTCACGCGAAGTGTTTGGCACCGTATCAG
GTCACAGCCGCTCCATGGTATTGCAAAGGCTGTCGCTCAGCTGGATTACC
GAATGACAACCCCACTCCGATACCGGATCCCCCTTCAAATCTTTCTCTCG
CTGCCCAGGCATTACATCGCGCCATCATCGATGCAAGAGAAGGTAACCCG
ATCGATTTAGTGTTGCATCCTTCGTTGCTGACTATGTTCCGCGGTCAATA
CGCTGGAAGAGATTGGCTCCAATGTTTTTCATGCAAGAGACGAAGAGTGG
TTCCCAATGGAATACTTAGTGAGTCTGTTCAAATCCCTTTTGAATGCAGC
GCGATGTTTTGGTTGCCTCCGGACCAACGGAGCTGCTCGTCACAAAAGGA
CCCTAATACACAGCGCATTGAGCAGTACATTAATCAACAAGCGGAGCTGC
GTGGTGAACGTAGAAAGGCTCTTCTGGAAAGCTTTGGTGACGGTTCCGAC
GATGACAGCGAGTATTCGTTACAGAGTGACCCATCAAACGTGAAACTCTC
TGCAAGACCGAGTGTTCCTCGCCCTGAACAGCCAAATAACCCAGTTGCTA
ATCATACGGTGATTCCAAACGGAATTTCCAAGCAGGATGCTGCTCCGAAG
ACTGTACCGCCTCCTCAGTCTAGCACGGAGCGCGTTATTGAGCATGATCA
AGCCGCAAGTGCTCAAAATCCAACGCACAAAGATTCTACAACAAATGGAT
TCGCCCCAATGGAAGTCGACACTATCGTTCCAAAGGAACCCAACCATTCC
GATGCGAAACCGGCACCAGCACCCACCGTGAATGCTGTGGCAAGTATAAC
AACAACACAGCAACCAAGTGCTACTCAGGCCCCGCTAACCTCGACAAGCC
AGGAGACAAGCCATGCGGGTACACCCCAGACCAAGACCGAGTCGGCCAAA
CAAGAAGACAGCATTGGTGGCTCTACTACAAAACCAGAGGATGTAGAGCA
GGAATTGCTCATGTATATAGCGGAGTTGGAACTTGATGAAGAGACGGAAG
ATATATTAACGGACCTAGCTTTGAGTAATGACAAGACTTTGACTCAAATT
TACATCGCTTTTCGATCGAATAAGGATCGATTCAAACGACAAGCTGTGCG
TTATGCGAAACGAAAGGCCAAGACATCTTGA back to topCoding sequence (CDS) from alignment at tig00000056_pilon:644138..646768- >Ggra6839.t1 ID=Ggra6839.t1|Name=Ggra6839.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2631bp|location=Sequence derived from alignment at tig00000056_pilon:644138..646768- (Gracilaria gracilis GNS1m male) ATGTCTGCAGCCTTCGGAACCAAGCAAATATCCGCCGACCAACACGCATC GCTCGCAGCTCCTGCGCGAGACCGTTCCATCACCGTCGACGATTTCATTG AACAGCCGGCGCAAGCCGATCCGGAATCCGACTCTGACGCGGACGAGAAC GAGCCTGCTGTCACACCCGCCCAGAAGAGACCTCGTTCTTCTATTCGGCG CTCCAGCTCGGCGCTTTCTTTCGAGAGCGAAGCTGAAGAAGACGAGGAAC AGCCGCCCGCGAAGAGACAGCGTTCCGACCCCCCCGTCGCGCCGTCTTCT TCATCACGTGTCCCATCGGCGGCGCCAGCTCCCAGCCCCCCTCATATCCA ACTTCCAACATCCCCACCCCAAGTCACCTCACGAGGCACGGGCTTTTTCT CGGGTCACTCGCCTCTCTCCTCCAAGACGAAGTCTCTGACTGCCTTCTTC AACGTTACCAACGCGAGGAAGCAGCCGAACCCGCTTCCGCAGCCTTTGAA TTCTCCGAAGCTCACAACCAGCATACCGCCTCCCTCTATTTCATCTCACG TGTTCCCGAGGTCACCGAGGTCACCGAACGCCCCGCCCTTATCGGTTGAT CCGTCTGCTCCTTCAAACCCCACTCCACCACGTACCACCGCTCCCGTCGC ACAGCGGGGGTCGGCTTCCCCCGCACCAAGTCCGGCCTCGCCCCAGGAAG GAAAATCGACCGACACGCCTCCTGTGAAACATTCTCCTGCGGCCGTAGTA AGTTCTACACCGTCTGTTAACAGGACTAATTCTCGAGTGGATGCCGATAC CACTGTTTCACCCAACAAACGCTCATCTCCACCTATCCGTCGTGTGTCGA TATCTTCTAAGGTCCCTGAAGAGACGACTACTAGCTTGGTCCTCGCGGAC CCTAAACCCATTGCGACTTCGCAAAAGGCTCCGAGTCCGCCTGCCCCCAA ACCCCCCCAACTACCGCCGCCAAAGTCTACGCCTGCTGCTCCGGTTACCG CCTTTGCCTCCACAGCCAATTACCAGCATTCAGGAGGAAGGCCTCCTACC GGAGCCTCTGCTAACCAGACGCCATCGTCCCCGCAGCCCAATTCGCCGGA TACGATACCGTCCGTTCAGGAGCGCAACTCCCCCATGCACGTTCCTGTGC CACCATTGGTACCACCAACTGGCTCTAACCCCTCTCAGCCAGTAAGAGCG ATTCCCGGGCATGCTAACTTACCACCACTGTCACACGACGACCTGATCAA CGTTCGCATGGCTAAGCCTGCGGACGGTGGGGATTGGGATCGCTTCGTTT TTTTCAAGCACAGGCCGCAACGCCATGACTTCGGAAAGAACTGCTATCTT TCTGACTACTCGCCTTTTGCGGCGGTGGCCCCTGCGGTGGCGAACGAACC GCCTTGCACACTTTGTGCGGTGTGCGGTGGAGGTTCTCGTCTCGTACGTT GCAGTGGATGTGTTTGCGCTTTTCACGCGAAGTGTTTGGCACCGTATCAG GTCACAGCCGCTCCATGGTATTGCAAAGGCTGTCGCTCAGCTGGATTACC GAATGACAACCCCACTCCGATACCGGATCCCCCTTCAAATCTTTCTCTCG CTGCCCAGGCATTACATCGCGCCATCATCGATGCAAGAGAAGGTAACCCG ATCGATTTAGTGTTGCATCCTTCGTTGCTGACTATGTTCCGCGGTCAATA CGCTGGAAGAGATTGGCTCCAATGTTTTTCATGCAAGAGACGAAGAGTGG TTCCCAATGGAATACTTAGTGAGTCTGTTCAAATCCCTTTTGAATGCAGC GCGATGTTTTGGTTGCCTCCGGACCAACGGAGCTGCTCGTCACAAAAGGA CCCTAATACACAGCGCATTGAGCAGTACATTAATCAACAAGCGGAGCTGC GTGGTGAACGTAGAAAGGCTCTTCTGGAAAGCTTTGGTGACGGTTCCGAC GATGACAGCGAGTATTCGTTACAGAGTGACCCATCAAACGTGAAACTCTC TGCAAGACCGAGTGTTCCTCGCCCTGAACAGCCAAATAACCCAGTTGCTA ATCATACGGTGATTCCAAACGGAATTTCCAAGCAGGATGCTGCTCCGAAG ACTGTACCGCCTCCTCAGTCTAGCACGGAGCGCGTTATTGAGCATGATCA AGCCGCAAGTGCTCAAAATCCAACGCACAAAGATTCTACAACAAATGGAT TCGCCCCAATGGAAGTCGACACTATCGTTCCAAAGGAACCCAACCATTCC GATGCGAAACCGGCACCAGCACCCACCGTGAATGCTGTGGCAAGTATAAC AACAACACAGCAACCAAGTGCTACTCAGGCCCCGCTAACCTCGACAAGCC AGGAGACAAGCCATGCGGGTACACCCCAGACCAAGACCGAGTCGGCCAAA CAAGAAGACAGCATTGGTGGCTCTACTACAAAACCAGAGGATGTAGAGCA GGAATTGCTCATGTATATAGCGGAGTTGGAACTTGATGAAGAGACGGAAG ATATATTAACGGACCTAGCTTTGAGTAATGACAAGACTTTGACTCAAATT TACATCGCTTTTCGATCGAATAAGGATCGATTCAAACGACAAGCTGTGCG TTATGCGAAACGAAAGGCCAAGACATCTTGA back to top
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