Ggra6756.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6756.t1
Unique NameGgra6756.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length672
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:433295..436740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45151.EDU40586
PFAMsRVT_2
Max annot lvl4751|Fungi
Evalue0.00042
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3A2VP@33154|Opisthokonta,3PAEI@4751|Fungi,3R0Y4@4890|Ascomycota
DescriptionEncoded by
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6756Ggra6756Gracilaria gracilis GNS1m malegenetig00000056_pilon 433295..436740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6756.t1Ggra6756.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 433295..436740 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6756.t1.stop1Ggra6756.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 433295..433297 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6756.t1.CDS1Ggra6756.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 433295..434246 -
Ggra6756.t1.CDS2Ggra6756.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 434567..435472 -
Ggra6756.t1.CDS3Ggra6756.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000056_pilon 436583..436740 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6756.t1.exon1Ggra6756.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 433295..434246 -
Ggra6756.t1.exon2Ggra6756.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 434567..435472 -
Ggra6756.t1.exon3Ggra6756.t1.exon3Gracilaria gracilis GNS1m maleexontig00000056_pilon 436583..436740 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6756.t1.intron1Ggra6756.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 434247..434566 -
Ggra6756.t1.intron2Ggra6756.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000056_pilon 435473..436582 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6756.t1.start1Ggra6756.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 436738..436740 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6756.t1 ID=Ggra6756.t1|Name=Ggra6756.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=672bp
MLEEILGEEVPLDAYVDSRTVFNVVAKYGSTLEKRLQIDVSALKESPSRG
ELRNWPEEKISQFQTILENVLPQNHLSLRREKSSPLGCVEKDRMPFICLI
WNLKHNIMRPKPDHLVKAIREAAKVTLLSLEEPLLRSVIDRMICRSLGRR
PLFSIFYRTFQYLESPDNVPISLEIVVKREISLVAELLPILHTRISRVVW
TRVIAFDASNDASAVVYTDVSSDYLSTLALIEQKKNQSDEDREFVIRFLN
SHEWKTAFVHHWRRREHINSLEAHTAILALDWAATFETTGHQLIVLSDSM
VTIGAFRKGRSPSPALCLQCRKYAAICMAHDLEVLLVHVHTPSEFNPADG
PSRSRNTLHLYVQADKKFLKEISVHPRSPQELDEVLSAYIEEQFEENGSP
GHRQEMAYVLAFLCVAQHSLKSSLGLSRRTLKGWEKLVPSQPAIPLTKKL
MFAFGDFFGTSGSYHAAVAICVQWCTYRRASEVLALRRIDNVLPGDIRTT
YIAQPISGITIEKSKTGPKQYTPIRHKDCQALLQSYLDQSASNPSERVVS
LSYEKYNKLFKEAASYFGLERSRFRTHSARIGGALSDFLKGVTAETIAIV
GRWSSFTSLQRYLVNGRVWLPQMKMESYSSTRIDTGSSKFFLLLQNCRSC
TSNIIPQNQKSSPICSVSELG*
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spliced messenger RNA

>Ggra6756.t1 ID=Ggra6756.t1|Name=Ggra6756.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2016bp|location=Sequence derived from alignment at tig00000056_pilon:433295..436740- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGAAGAAATATTAGGAGAGGAAGTGCCACTGGATGCATACGTGGA
TTCACGAACGGTGTTTAATGTAGTCGCGAAGTATGGATCTACTCTCGAGA
AAAGGCTGCAGATTGATGTGTCTGCGCTTAAGGAAAGCCCCAGTCGCGGC
GAGTTAAGGAACTGGCCAGAAGAGAAGATTTCTCAATTCCAAACCATTTT
GGAGAACGTTCTCCCACAAAACCATCTTTCTCTTAGAAGAGAGAAGTCGT
CCCCATTAGGGTGCGTGGAGAAGGATCGCATGCCCTTCATATGTTTGATA
TGGAATTTGAAGCACAATATCATGAGACCCAAGCCTGACCATCTAGTTAA
GGCGATTCGCGAAGCCGCCAAGGTGACCTTACTATCCTTGGAAGAACCGC
TGCTGAGATCAGTTATTGATCGTATGATATGCCGTTCTCTCGGACGCCGC
CCCCTTTTCTCGATTTTTTATCGGACTTTTCAATATTTGGAGAGCCCTGA
TAATGTCCCAATTAGCTTGGAAATAGTTGTGAAGCGAGAAATTAGTTTAG
TGGCCGAACTACTTCCCATTTTGCATACAAGGATATCAAGAGTTGTTTGG
ACTCGAGTGATTGCCTTCGACGCTTCAAACGATGCCAGTGCAGTGGTCTA
TACAGATGTCAGCTCTGATTATCTCTCAACTCTAGCATTGATCGAACAGA
AGAAAAATCAATCTGATGAAGATCGAGAGTTTGTCATTCGTTTCCTGAAT
TCTCACGAGTGGAAAACCGCCTTTGTTCACCACTGGCGCCGCAGAGAGCA
CATCAACAGTCTTGAAGCACATACTGCAATCCTCGCCCTTGATTGGGCTG
CAACCTTTGAAACAACTGGACATCAGTTGATTGTACTTTCGGACTCTATG
GTGACCATAGGGGCGTTCCGAAAAGGCCGATCGCCTTCTCCAGCTCTCTG
CTTGCAATGCAGAAAGTACGCAGCCATTTGTATGGCTCACGACCTTGAAG
TTCTACTTGTTCACGTTCACACACCTTCCGAGTTCAACCCCGCCGATGGA
CCCTCCCGATCACGCAACACACTTCATCTCTACGTTCAAGCCGACAAGAA
GTTTTTGAAGGAGATTTCCGTTCATCCAAGATCCCCTCAAGAGCTCGATG
AAGTTTTATCTGCGTACATTGAAGAACAGTTTGAAGAAAATGGATCCCCT
GGACACCGTCAAGAAATGGCTTACGTTTTGGCCTTTCTCTGTGTTGCACA
GCACTCCTTGAAATCCAGCCTTGGCCTTTCCCGACGAACGCTGAAAGGGT
GGGAAAAACTGGTGCCATCGCAGCCTGCAATTCCTCTCACGAAGAAACTG
ATGTTCGCTTTTGGCGATTTCTTCGGCACATCAGGTTCTTACCACGCAGC
TGTTGCGATCTGCGTCCAGTGGTGCACCTACAGGAGAGCTTCCGAAGTTT
TGGCCTTACGAAGAATAGACAATGTTCTGCCTGGAGACATTCGTACTACG
TATATAGCCCAGCCTATTTCTGGTATAACAATTGAGAAGTCCAAGACAGG
TCCGAAGCAGTACACTCCTATTCGACACAAAGACTGTCAGGCTCTTCTTC
AGTCATACCTTGATCAATCGGCATCCAACCCATCGGAAAGGGTTGTCAGT
CTGTCTTATGAAAAATACAACAAACTCTTCAAAGAAGCGGCTTCCTACTT
TGGCCTCGAGCGCTCGAGATTTAGAACGCACTCTGCGCGCATAGGTGGCG
CGCTCTCTGATTTCCTCAAGGGCGTCACAGCTGAGACTATTGCAATCGTT
GGAAGATGGAGTTCATTCACTTCTCTGCAAAGATACCTTGTGAATGGTAG
AGTATGGCTCCCCCAGATGAAAATGGAATCTTACTCGTCTACACGGATTG
ATACAGGTTCATCTAAATTCTTCTTGCTGTTGCAAAATTGTCGTTCTTGT
ACTTCAAATATTATACCTCAGAACCAAAAGAGCAGTCCAATCTGCTCTGT
TTCGGAGTTGGGATAG
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protein sequence of Ggra6756.t1

>Ggra6756.t1 ID=Ggra6756.t1|Name=Ggra6756.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=672bp
MLEEILGEEVPLDAYVDSRTVFNVVAKYGSTLEKRLQIDVSALKESPSRG
ELRNWPEEKISQFQTILENVLPQNHLSLRREKSSPLGCVEKDRMPFICLI
WNLKHNIMRPKPDHLVKAIREAAKVTLLSLEEPLLRSVIDRMICRSLGRR
PLFSIFYRTFQYLESPDNVPISLEIVVKREISLVAELLPILHTRISRVVW
TRVIAFDASNDASAVVYTDVSSDYLSTLALIEQKKNQSDEDREFVIRFLN
SHEWKTAFVHHWRRREHINSLEAHTAILALDWAATFETTGHQLIVLSDSM
VTIGAFRKGRSPSPALCLQCRKYAAICMAHDLEVLLVHVHTPSEFNPADG
PSRSRNTLHLYVQADKKFLKEISVHPRSPQELDEVLSAYIEEQFEENGSP
GHRQEMAYVLAFLCVAQHSLKSSLGLSRRTLKGWEKLVPSQPAIPLTKKL
MFAFGDFFGTSGSYHAAVAICVQWCTYRRASEVLALRRIDNVLPGDIRTT
YIAQPISGITIEKSKTGPKQYTPIRHKDCQALLQSYLDQSASNPSERVVS
LSYEKYNKLFKEAASYFGLERSRFRTHSARIGGALSDFLKGVTAETIAIV
GRWSSFTSLQRYLVNGRVWLPQMKMESYSSTRIDTGSSKFFLLLQNCRSC
TSNIIPQNQKSSPICSVSELG*
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mRNA from alignment at tig00000056_pilon:433295..436740-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6756.t1 ID=Ggra6756.t1|Name=Ggra6756.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3446bp|location=Sequence derived from alignment at tig00000056_pilon:433295..436740- (Gracilaria gracilis GNS1m male)
ATGCTGGAAGAAATATTAGGAGAGGAAGTGCCACTGGATGCATACGTGGA
TTCACGAACGGTGTTTAATGTAGTCGCGAAGTATGGATCTACTCTCGAGA
AAAGGCTGCAGATTGATGTGTCTGCGCTTAAGGAAAGCCCCAGTCGCGGC
GAGTTAAGGTATCTAGCATGGATACCGGGAGACCAGAATGTTAGCGATAG
ATTAACTAAGGGACTAGTTGGAAACAGTCATCCGCTCTGGAAACTCATGA
CTACGAATCGGATTTTTGTTGCGACCCACAGGCTGGGTGGAAGGTACTCG
TATTGATGTGAACACTGCGTGATTTCTTCGAAAAGAAAAATCTTGGAGTG
TCGAATGTTGACAGTGACGTGGGACGCTAAGACACTGTCTCTGATCAGCC
TTGTTGAACTTGAATTCCTAAGTTACATAAGAAGAAAGTGAATTGAATCA
TCTTGATCTGAGGGTACTATTCTAATACCTTCGATTACAGTGACAGATGG
TTAGTACTTAAGTAGGTACTACAATGCGTAAACAATAAACGGGAGCTATC
ATCGATTATTACAACTACTATCTTCGTACACTTTGTACCGCATCACAACC
CCGAGAGTTCGCTTCGCGGCAGCCTCAACCACAGGCACTCTATCGCCGGT
GGAATCGACAGAGCAACTCTCACTCAGCCAACCAGCAGGCCGGGTGACAG
GGTGCTTCTGTGAGAGGTTCAGACCTTGCCACAACAGCCCAGCAGAGGGC
CGTTATTCAAGGCGAGAACTTGAAGCAGCCATACTGCATTTTCAGCAGTA
GACTGCATCTTTCAGGCTGAGTTTTTACACAATCCATCTAGAATCACAGC
ATGGCAATTTTTCTGGCTTCTACCTGGATGTTGCGAATATGTTCCACAAC
ATTTGCGTACCTCCTTTTCTGTCAAAACTCTTTCCATTGAAGCAATTAAT
CTTCGGAAATCTGCCGAAAAGTTTGCAACACACTTTTCAGAAACAGGTGG
GGCGCAGACTTCATCAGAAGCAGCTCGTACGTCTTTTGCAGAGCATGCTA
CCGATTGGATTCAAATGGTCTGTCTTTCTTGTGCATACGTCTAGAGAATC
GTGCTACAAAGAAGCCTTTAACATATTCCGAGCGAGTGCTTCAGTGCGGT
TTTCTTCTTTCTCCCCTTCGCAACCCATATTGCTACACCGGGGAACTGGA
CCTTCATATCTGGTCGAAGGAAGTGTCATAATCCAACATGTTATAGACGA
CTTGAACTTTGTGTTCAGGAACTGGCCAGAAGAGAAGATTTCTCAATTCC
AAACCATTTTGGAGAACGTTCTCCCACAAAACCATCTTTCTCTTAGAAGA
GAGAAGTCGTCCCCATTAGGGTGCGTGGAGAAGGATCGCATGCCCTTCAT
ATGTTTGATATGGAATTTGAAGCACAATATCATGAGACCCAAGCCTGACC
ATCTAGTTAAGGCGATTCGCGAAGCCGCCAAGGTGACCTTACTATCCTTG
GAAGAACCGCTGCTGAGATCAGTTATTGATCGTATGATATGCCGTTCTCT
CGGACGCCGCCCCCTTTTCTCGATTTTTTATCGGACTTTTCAATATTTGG
AGAGCCCTGATAATGTCCCAATTAGCTTGGAAATAGTTGTGAAGCGAGAA
ATTAGTTTAGTGGCCGAACTACTTCCCATTTTGCATACAAGGATATCAAG
AGTTGTTTGGACTCGAGTGATTGCCTTCGACGCTTCAAACGATGCCAGTG
CAGTGGTCTATACAGATGTCAGCTCTGATTATCTCTCAACTCTAGCATTG
ATCGAACAGAAGAAAAATCAATCTGATGAAGATCGAGAGTTTGTCATTCG
TTTCCTGAATTCTCACGAGTGGAAAACCGCCTTTGTTCACCACTGGCGCC
GCAGAGAGCACATCAACAGTCTTGAAGCACATACTGCAATCCTCGCCCTT
GATTGGGCTGCAACCTTTGAAACAACTGGACATCAGTTGATTGTACTTTC
GGACTCTATGGTGACCATAGGGGCGTTCCGAAAAGGCCGATCGCCTTCTC
CAGCTCTCTGCTTGCAATGCAGAAAGTACGCAGCCATTTGTATGGCTCAC
GACCTTGAAGTTCTACTTGTTCACGTTCACACACCTTCCGAGTTCAACCC
CGCCGATGGACCCTCCCGATCACGGTTGACAGTGGGGCAGCTATGAGTCC
ATTTTCGGCTCATTTCTCTCGGACATGCTGGCAAACTGCATATAATTGTA
GTCCGGACTGGACGCATACGCAACAACCAATACCTGAGCTTTCACAGCTA
CACATTTCCTTCCAGAGACACTGGAAGAATAAATTGAGGCTTTCCTCTCC
CATTCGAAAGAAGCCAGTTAAAGGAAATGCATCTTGAAAAATTGCTTCCA
GATGATTGCTCCTTCGAAAGCACCACGACCGATTCGAACTTCCTCATCCT
GACTCTCTGGTGAACCGTCGTCTCATTTCAAGTACAATATCCAGCAACAC
ACTTCATCTCTACGTTCAAGCCGACAAGAAGTTTTTGAAGGAGATTTCCG
TTCATCCAAGATCCCCTCAAGAGCTCGATGAAGTTTTATCTGCGTACATT
GAAGAACAGTTTGAAGAAAATGGATCCCCTGGACACCGTCAAGAAATGGC
TTACGTTTTGGCCTTTCTCTGTGTTGCACAGCACTCCTTGAAATCCAGCC
TTGGCCTTTCCCGACGAACGCTGAAAGGGTGGGAAAAACTGGTGCCATCG
CAGCCTGCAATTCCTCTCACGAAGAAACTGATGTTCGCTTTTGGCGATTT
CTTCGGCACATCAGGTTCTTACCACGCAGCTGTTGCGATCTGCGTCCAGT
GGTGCACCTACAGGAGAGCTTCCGAAGTTTTGGCCTTACGAAGAATAGAC
AATGTTCTGCCTGGAGACATTCGTACTACGTATATAGCCCAGCCTATTTC
TGGTATAACAATTGAGAAGTCCAAGACAGGTCCGAAGCAGTACACTCCTA
TTCGACACAAAGACTGTCAGGCTCTTCTTCAGTCATACCTTGATCAATCG
GCATCCAACCCATCGGAAAGGGTTGTCAGTCTGTCTTATGAAAAATACAA
CAAACTCTTCAAAGAAGCGGCTTCCTACTTTGGCCTCGAGCGCTCGAGAT
TTAGAACGCACTCTGCGCGCATAGGTGGCGCGCTCTCTGATTTCCTCAAG
GGCGTCACAGCTGAGACTATTGCAATCGTTGGAAGATGGAGTTCATTCAC
TTCTCTGCAAAGATACCTTGTGAATGGTAGAGTATGGCTCCCCCAGATGA
AAATGGAATCTTACTCGTCTACACGGATTGATACAGGTTCATCTAAATTC
TTCTTGCTGTTGCAAAATTGTCGTTCTTGTACTTCAAATATTATACCTCA
GAACCAAAAGAGCAGTCCAATCTGCTCTGTTTCGGAGTTGGGATAG
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Coding sequence (CDS) from alignment at tig00000056_pilon:433295..436740-

>Ggra6756.t1 ID=Ggra6756.t1|Name=Ggra6756.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2016bp|location=Sequence derived from alignment at tig00000056_pilon:433295..436740- (Gracilaria gracilis GNS1m male)
ATGCTGGAAGAAATATTAGGAGAGGAAGTGCCACTGGATGCATACGTGGA
TTCACGAACGGTGTTTAATGTAGTCGCGAAGTATGGATCTACTCTCGAGA
AAAGGCTGCAGATTGATGTGTCTGCGCTTAAGGAAAGCCCCAGTCGCGGC
GAGTTAAGGAACTGGCCAGAAGAGAAGATTTCTCAATTCCAAACCATTTT
GGAGAACGTTCTCCCACAAAACCATCTTTCTCTTAGAAGAGAGAAGTCGT
CCCCATTAGGGTGCGTGGAGAAGGATCGCATGCCCTTCATATGTTTGATA
TGGAATTTGAAGCACAATATCATGAGACCCAAGCCTGACCATCTAGTTAA
GGCGATTCGCGAAGCCGCCAAGGTGACCTTACTATCCTTGGAAGAACCGC
TGCTGAGATCAGTTATTGATCGTATGATATGCCGTTCTCTCGGACGCCGC
CCCCTTTTCTCGATTTTTTATCGGACTTTTCAATATTTGGAGAGCCCTGA
TAATGTCCCAATTAGCTTGGAAATAGTTGTGAAGCGAGAAATTAGTTTAG
TGGCCGAACTACTTCCCATTTTGCATACAAGGATATCAAGAGTTGTTTGG
ACTCGAGTGATTGCCTTCGACGCTTCAAACGATGCCAGTGCAGTGGTCTA
TACAGATGTCAGCTCTGATTATCTCTCAACTCTAGCATTGATCGAACAGA
AGAAAAATCAATCTGATGAAGATCGAGAGTTTGTCATTCGTTTCCTGAAT
TCTCACGAGTGGAAAACCGCCTTTGTTCACCACTGGCGCCGCAGAGAGCA
CATCAACAGTCTTGAAGCACATACTGCAATCCTCGCCCTTGATTGGGCTG
CAACCTTTGAAACAACTGGACATCAGTTGATTGTACTTTCGGACTCTATG
GTGACCATAGGGGCGTTCCGAAAAGGCCGATCGCCTTCTCCAGCTCTCTG
CTTGCAATGCAGAAAGTACGCAGCCATTTGTATGGCTCACGACCTTGAAG
TTCTACTTGTTCACGTTCACACACCTTCCGAGTTCAACCCCGCCGATGGA
CCCTCCCGATCACGCAACACACTTCATCTCTACGTTCAAGCCGACAAGAA
GTTTTTGAAGGAGATTTCCGTTCATCCAAGATCCCCTCAAGAGCTCGATG
AAGTTTTATCTGCGTACATTGAAGAACAGTTTGAAGAAAATGGATCCCCT
GGACACCGTCAAGAAATGGCTTACGTTTTGGCCTTTCTCTGTGTTGCACA
GCACTCCTTGAAATCCAGCCTTGGCCTTTCCCGACGAACGCTGAAAGGGT
GGGAAAAACTGGTGCCATCGCAGCCTGCAATTCCTCTCACGAAGAAACTG
ATGTTCGCTTTTGGCGATTTCTTCGGCACATCAGGTTCTTACCACGCAGC
TGTTGCGATCTGCGTCCAGTGGTGCACCTACAGGAGAGCTTCCGAAGTTT
TGGCCTTACGAAGAATAGACAATGTTCTGCCTGGAGACATTCGTACTACG
TATATAGCCCAGCCTATTTCTGGTATAACAATTGAGAAGTCCAAGACAGG
TCCGAAGCAGTACACTCCTATTCGACACAAAGACTGTCAGGCTCTTCTTC
AGTCATACCTTGATCAATCGGCATCCAACCCATCGGAAAGGGTTGTCAGT
CTGTCTTATGAAAAATACAACAAACTCTTCAAAGAAGCGGCTTCCTACTT
TGGCCTCGAGCGCTCGAGATTTAGAACGCACTCTGCGCGCATAGGTGGCG
CGCTCTCTGATTTCCTCAAGGGCGTCACAGCTGAGACTATTGCAATCGTT
GGAAGATGGAGTTCATTCACTTCTCTGCAAAGATACCTTGTGAATGGTAG
AGTATGGCTCCCCCAGATGAAAATGGAATCTTACTCGTCTACACGGATTG
ATACAGGTTCATCTAAATTCTTCTTGCTGTTGCAAAATTGTCGTTCTTGT
ACTTCAAATATTATACCTCAGAACCAAAAGAGCAGTCCAATCTGCTCTGT
TTCGGAGTTGGGATAG
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