Ggra6756.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6756.t1
Unique NameGgra6756.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length672
Homology
BLAST of Ggra6756.t1 vs. uniprot
Match: A0A2V3IJX2 (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJX2_9FLOR)

HSP 1 Score: 192 bits (489), Expect = 5.810e-52
Identity = 104/294 (35.37%), Postives = 156/294 (53.06%), Query Frame = 0
Query:  357 TLHLYVQADKKFLKEISVHPRSPQELDEVLSAYIEEQFEENGSPGHRQEMAYVLAFLCVAQHSLKSSLGLSRRTLKGWEKLVPSQPAIPLTKKLMFAFGDFFGTSGSYHAAVAICVQWCTYRRASEVLALRRIDNVLPGDIRTTYIAQPISGITIEKSKTGPKQYTPIRHKDCQALLQSYLDQSASNPSERVVSLSYEKYNKLFKEAASYFGLERSRFRTHSARIGGALSDFLKGVTAETIAIVGRWSSFTSLQRYLVNGRVWLPQMKMESYSSTRIDTGSSKFFLLLQNCRSC 650
            TL  Y +A   F   ++        LD ++ +YI + F+E+     +QEM      L +     K+ L +S R++KGWEK   +QP+ P T++++ AF       G   AAV + + W  Y R SE LALR  +  LPGD R       ++GITI  +KTGP Q+  I+ ++C  LL+ Y+ +  SN  + + ++ Y  Y    K+  S+F +   +  THSARIGGAL DF++G  AE IA+ GRW+S TSL+ YL  GR WL +M +    + +I   S       +  R C
Sbjct:   56 TLQSYCKALDNFTATLTTSCPDLHHLDHLIDSYINKTFKEDPRATRKQEMTNHPCALYIVDARTKTGLPMSHRSIKGWEKSHNAQPSTPFTQEILHAFVMKLLLDGRAEAAVCLALSWAGYLRVSEALALRAENVALPGDPRVAAYGYEVAGITILVAKTGPLQFVSIKDRNCITLLKCYM-KKLSNIRDTLFTIKYSTYAAQLKKVMSFFNVTHLKLTTHSARIGGALHDFMRGTKAEDIALKGRWNSLTSLRHYLTTGRAWLMKMNITDQQTAKIKQYSLNMVQTTERYRRC 348          
BLAST of Ggra6756.t1 vs. uniprot
Match: A0A2V3J3T3 (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3T3_9FLOR)

HSP 1 Score: 175 bits (443), Expect = 1.090e-46
Identity = 93/245 (37.96%), Postives = 135/245 (55.10%), Query Frame = 0
Query:  406 MAYVLAFLCVAQHSLKSSLGLSRRTLKGWEKLVPSQPAIPLTKKLMFAFGDFFGTSGSYHAAVAICVQWCTYRRASEVLALRRIDNVLPGDIRTTYIAQPISGITIEKSKTGPKQYTPIRHKDCQALLQSYLDQSASNPSERVVSLSYEKYNKLFKEAASYFGLERSRFRTHSARIGGALSDFLKGVTAETIAIVGRWSSFTSLQRYLVNGRVWLPQMKMESYSSTRIDTGSSKFFLLLQNCRSC 650
            M  +L  L +     K+ L LS R++KGWEK   +QP+ P T++++ AF       G+  AAV + + W  Y R SE LALR  +  LP D R       ++GI I  +KTGP Q+  I+ ++C  LL  Y+ +  SN  + + ++ Y  Y    K+  S+F +   +F THSARIGGAL DF++G  AE IA+ GRW+S TSL+ YL  GR WL +M +    + +I   S       +  RSC
Sbjct:    1 MTNLLCALYIVDARTKTGLPLSHRSIKGWEKSHNAQPSTPFTQEILHAFVMKVLLDGTAEAAVCLALSWAGYLRVSEALALRVENVALPEDPRVASYGNEVAGIAILDAKTGPLQFVSIKDRNCITLLTYYM-KKLSNIQDTLFTIKYSTYAAQLKKVMSFFNVTHLKFTTHSARIGGALHDFMRGTKAEDIALKGRWNSLTSLRHYLTTGRAWLMKMNITDQQTAKIKQYSLNMVQTTERYRSC 244          
BLAST of Ggra6756.t1 vs. uniprot
Match: A0A812GA73 (ABCA1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812GA73_9DINO)

HSP 1 Score: 74.7 bits (182), Expect = 4.450e-10
Identity = 65/223 (29.15%), Postives = 109/223 (48.88%), Query Frame = 0
Query:  149 RRPLFSIFYRTFQY-LESPDNVPISLEIVVKREISLVAELLPILHTRISRVVWTRVIAFDASNDAS-AVVYTDVSSDYLSTLALIEQKKN-----------QSDEDREFVIRFL--NSHEWKTAFVHHWRRREHINSLEAHTAILALDWAA-TFETTGHQLIVLSDSMVTIGAFRKGRSPSPALCLQCRKYAAICMAHDLEVLLVHVHTPSEFNPADGPSRSR 355
            +RPLFS+F   +++ L+ P    + L   V  EI++   L+P+L   +SR    R+ A DA+ +    + Y D  +   + +  + +++            ++ +DR      L      +K A     + + H  +LEAH   LAL W   T +   H+L+VL D+   +GA  KGR+ +P +    R    + +A +  + LV+V  PSE+NPAD PSR R
Sbjct: 1134 QRPLFSVFNTVYEFVLQEPATTCVKLPECVCSEIAVATFLMPLLGADLSRPFLPRLTASDAAPEYGFGLAYLDCDAACAAHVGSLAERRGDFVKFYLEPGEEAGKDRLGTPHRLPFRKRSFKVAVSARAKWQAHSGALEAHGLQLALKWLLRTPKRFHHRLVVLVDAKAILGAASKGRTSAPGIRGVIRHIGGLLLATNCLLRLVYV--PSEYNPADAPSRGR 1354          
The following BLAST results are available for this feature:
BLAST of Ggra6756.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IJX25.810e-5235.37Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
A0A2V3J3T31.090e-4637.96Uncharacterized protein n=2 Tax=Gracilariopsis cho... [more]
A0A812GA734.450e-1029.15ABCA1 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013762Integrase-like, catalytic domain superfamilyGENE3D1.10.443.10Intergrase catalytic corecoord: 460..615
e-value: 1.3E-13
score: 53.1
IPR011010DNA breaking-rejoining enzyme, catalytic coreSUPERFAMILY56349DNA breaking-rejoining enzymescoord: 464..613

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:433295..436740 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6756.t1Ggra6756.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 433295..436740 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6756.t1 ID=Ggra6756.t1|Name=Ggra6756.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=672bp
MLEEILGEEVPLDAYVDSRTVFNVVAKYGSTLEKRLQIDVSALKESPSRG
ELRNWPEEKISQFQTILENVLPQNHLSLRREKSSPLGCVEKDRMPFICLI
WNLKHNIMRPKPDHLVKAIREAAKVTLLSLEEPLLRSVIDRMICRSLGRR
PLFSIFYRTFQYLESPDNVPISLEIVVKREISLVAELLPILHTRISRVVW
TRVIAFDASNDASAVVYTDVSSDYLSTLALIEQKKNQSDEDREFVIRFLN
SHEWKTAFVHHWRRREHINSLEAHTAILALDWAATFETTGHQLIVLSDSM
VTIGAFRKGRSPSPALCLQCRKYAAICMAHDLEVLLVHVHTPSEFNPADG
PSRSRNTLHLYVQADKKFLKEISVHPRSPQELDEVLSAYIEEQFEENGSP
GHRQEMAYVLAFLCVAQHSLKSSLGLSRRTLKGWEKLVPSQPAIPLTKKL
MFAFGDFFGTSGSYHAAVAICVQWCTYRRASEVLALRRIDNVLPGDIRTT
YIAQPISGITIEKSKTGPKQYTPIRHKDCQALLQSYLDQSASNPSERVVS
LSYEKYNKLFKEAASYFGLERSRFRTHSARIGGALSDFLKGVTAETIAIV
GRWSSFTSLQRYLVNGRVWLPQMKMESYSSTRIDTGSSKFFLLLQNCRSC
TSNIIPQNQKSSPICSVSELG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat_sf
IPR011010DNA_brk_join_enz