Ggra6879.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra6879.t1
Unique Name	Ggra6879.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	450

Homology

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BLAST of Ggra6879.t1 vs. uniprot
Match: A0A2V3J237 (SWI/SNF chromatin-remodeling complex subunit snf22 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J237_9FLOR)

HSP 1 Score: 314 bits (805), Expect = 7.010e-100
Identity = 303/450 (67.33%), Postives = 338/450 (75.11%), Query Frame = 0

Query:    1 MMLHALVTTALIAFASAHCIYTDTECVCTQAQSGRTCLRYYSGSGASTQCETYECGTGFVCDCAGTEMCDVTDCSLMRTVYRPVGAAPSGFGQIVDCELATQVTCVTPRNEAAPSPDHSPDXXXXPXXXSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPSSAATIPLGGVCTPTDTCETGAACSCTGFCARIINIEIEAIADDSVVPMMCGTELGPPTPDNIIAGSYTYSGVCDDLYYRVNNQGGIWDGLLTAVRDVNTNTYYPSVLPPNSGITAISRQNPPNLDFFTDPAYDFSSWTPAVQHTNDLVLYAEYIAFQNTYGGI-IWSIDNQRTPRADQGFIYHRVILPFC 449
            MML A++T A   FA   CIY+DTEC C QAQ+GRTCLRY+SGSGASTQCETYECGTGFVCDCAGTEMCDVTDCSLMRTVYRPVG      GQIVDC++ATQVTCVTPRN A PS   SP    X XXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                AA +PLGG CTPT TC TG +CSCTGFCA  +NI+I+A  DD+VVP++CGT LG  T     AG++ Y+G C+D+Y  V+N  G   G+  ++ D  TNT Y + +   S +T     NPPNLDFFTDPAYDFS W+P V  T  L+  + YI F N +GG  +W+  +      D G  Y+RV LPFC
Sbjct:    1 MMLKAILTAAFFTFAFGQCIYSDTECQCVQAQAGRTCLRYFSGSGASTQCETYECGTGFVCDCAGTEMCDVTDCSLMRTVYRPVGTTTLTVGQIVDCQMATQVTCVTPRNAAVPSASASPSASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------AAFVPLGGACTPTSTCATGTSCSCTGFCATNVNIQIDAQGDDTVVPVVCGTNLGAVTTGFGDAGTWFYTGACNDVYLLVSNSRGGHTGVAASIVDQTTNTQYITRVD-GSDLTGTVLDNPPNLDFFTDPAYDFSIWSPVVLQTK-LINDSPYINFANNFGGATVWTHTDGHLGAGDLGSAYYRVQLPFC 432

The following BLAST results are available for this feature:

BLAST of Ggra6879.t1 vs. uniprot

BLAST of Ggra6879.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3J237	7.010e-100	67.33	SWI/SNF chromatin-remodeling complex subunit snf22...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 236..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..175
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..2
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 15..19
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 20..449
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 3..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..19

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:818840..820274 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6879.t1	Ggra6879.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000056_pilon 818840..820274 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra6879.t1 ID=Ggra6879.t1|Name=Ggra6879.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=450bp
MMLHALVTTALIAFASAHCIYTDTECVCTQAQSGRTCLRYYSGSGASTQC
ETYECGTGFVCDCAGTEMCDVTDCSLMRTVYRPVGAAPSGFGQIVDCELA
TQVTCVTPRNEAAPSPDHSPDHSPSPMPSSSSSPAPSSSSSPAPSSPAPS
SSSSPVPSSSSSPAPSASSSPAASASSSPAASPSTSSSPAASASSSPAAS
ASSSPAPSSSSSPAPSASASPSASASATPSASASPTPSNSPAPSPSSTPS
ATPSVSPTPSSAATIPLGGVCTPTDTCETGAACSCTGFCARIINIEIEAI
ADDSVVPMMCGTELGPPTPDNIIAGSYTYSGVCDDLYYRVNNQGGIWDGL
LTAVRDVNTNTYYPSVLPPNSGITAISRQNPPNLDFFTDPAYDFSSWTPA
VQHTNDLVLYAEYIAFQNTYGGIIWSIDNQRTPRADQGFIYHRVILPFC*