Ggra6879.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6879.t1
Unique NameGgra6879.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length450
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:818840..820274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6879Ggra6879Gracilaria gracilis GNS1m malegenetig00000056_pilon 818840..820274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6879.t1Ggra6879.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 818840..820274 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6879.t1.start1Ggra6879.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 818840..818842 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6879.t1.CDS1Ggra6879.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 818840..819026 +
Ggra6879.t1.CDS2Ggra6879.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 819112..820274 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6879.t1.exon1Ggra6879.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 818840..819026 +
Ggra6879.t1.exon2Ggra6879.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 819112..820274 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6879.t1.intron1Ggra6879.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 819027..819111 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6879.t1.stop1Ggra6879.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 820272..820274 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6879.t1 ID=Ggra6879.t1|Name=Ggra6879.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=450bp
MMLHALVTTALIAFASAHCIYTDTECVCTQAQSGRTCLRYYSGSGASTQC
ETYECGTGFVCDCAGTEMCDVTDCSLMRTVYRPVGAAPSGFGQIVDCELA
TQVTCVTPRNEAAPSPDHSPDHSPSPMPSSSSSPAPSSSSSPAPSSPAPS
SSSSPVPSSSSSPAPSASSSPAASASSSPAASPSTSSSPAASASSSPAAS
ASSSPAPSSSSSPAPSASASPSASASATPSASASPTPSNSPAPSPSSTPS
ATPSVSPTPSSAATIPLGGVCTPTDTCETGAACSCTGFCARIINIEIEAI
ADDSVVPMMCGTELGPPTPDNIIAGSYTYSGVCDDLYYRVNNQGGIWDGL
LTAVRDVNTNTYYPSVLPPNSGITAISRQNPPNLDFFTDPAYDFSSWTPA
VQHTNDLVLYAEYIAFQNTYGGIIWSIDNQRTPRADQGFIYHRVILPFC*
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spliced messenger RNA

>Ggra6879.t1 ID=Ggra6879.t1|Name=Ggra6879.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1350bp|location=Sequence derived from alignment at tig00000056_pilon:818840..820274+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGCTTCACGCCCTCGTCACCACGGCTTTGATCGCCTTCGCTTCCGC
CCACTGCATCTACACTGATACCGAATGCGTTTGCACCCAGGCTCAGTCTG
GTCGAACCTGTCTCCGTTACTACAGCGGTTCCGGAGCCTCTACCCAGTGC
GAGACCTACGAATGTGGCACCGGCTTTGTCTGTGATTGTGCCGGAACTGA
AATGTGTGACGTTACCGATTGCAGCCTCATGCGCACCGTGTACCGCCCCG
TTGGCGCGGCCCCATCCGGCTTTGGTCAGATCGTTGACTGTGAGCTCGCC
ACTCAAGTCACTTGCGTCACCCCCAGAAACGAGGCCGCTCCCTCACCGGA
TCACTCCCCGGATCACTCGCCGTCTCCTATGCCGAGCTCGTCTTCCTCCC
CGGCTCCGTCGTCGTCGTCGTCCCCGGCCCCGTCGTCCCCGGCCCCGTCT
TCATCCTCCTCGCCGGTGCCTTCGTCTTCCTCCTCTCCGGCGCCTTCAGC
ATCCTCTTCCCCGGCGGCTTCGGCGTCTTCCTCCCCGGCTGCCTCACCAT
CGACATCCTCTTCTCCGGCTGCTTCGGCGTCCTCTTCCCCGGCTGCTTCG
GCTTCATCTTCCCCGGCGCCTTCTTCCTCCTCTTCCCCGGCTCCCTCCGC
ATCCGCATCTCCGTCTGCGAGCGCGTCTGCCACTCCTTCTGCGTCGGCCT
CTCCCACTCCATCCAACTCTCCGGCGCCCTCGCCTTCATCCACTCCATCG
GCCACGCCTTCCGTCTCTCCTACCCCGTCTAGCGCGGCTACCATTCCTCT
CGGCGGCGTCTGTACTCCTACCGACACATGCGAAACTGGAGCTGCATGCT
CTTGCACTGGATTCTGCGCACGTATTATTAACATTGAGATTGAAGCGATT
GCAGATGACAGTGTTGTACCGATGATGTGCGGAACGGAACTTGGTCCACC
CACCCCCGATAACATCATCGCTGGAAGCTACACATACTCTGGTGTTTGCG
ATGATCTCTACTACCGTGTGAACAACCAGGGTGGTATCTGGGATGGTCTC
CTTACTGCCGTTCGTGATGTCAACACCAACACGTACTATCCTTCCGTTCT
TCCGCCAAACTCTGGTATCACTGCCATCTCGAGACAGAACCCGCCCAACT
TGGACTTCTTTACTGATCCGGCATATGACTTCAGCAGTTGGACTCCGGCT
GTGCAGCACACCAACGACCTTGTCCTGTACGCGGAGTACATCGCTTTCCA
AAACACTTATGGCGGTATTATCTGGAGTATCGACAACCAGCGAACGCCAC
GCGCTGACCAAGGTTTCATCTACCACAGGGTTATCCTTCCGTTCTGTTAA
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protein sequence of Ggra6879.t1

>Ggra6879.t1 ID=Ggra6879.t1|Name=Ggra6879.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=450bp
MMLHALVTTALIAFASAHCIYTDTECVCTQAQSGRTCLRYYSGSGASTQC
ETYECGTGFVCDCAGTEMCDVTDCSLMRTVYRPVGAAPSGFGQIVDCELA
TQVTCVTPRNEAAPSPDHSPDHSPSPMPSSSSSPAPSSSSSPAPSSPAPS
SSSSPVPSSSSSPAPSASSSPAASASSSPAASPSTSSSPAASASSSPAAS
ASSSPAPSSSSSPAPSASASPSASASATPSASASPTPSNSPAPSPSSTPS
ATPSVSPTPSSAATIPLGGVCTPTDTCETGAACSCTGFCARIINIEIEAI
ADDSVVPMMCGTELGPPTPDNIIAGSYTYSGVCDDLYYRVNNQGGIWDGL
LTAVRDVNTNTYYPSVLPPNSGITAISRQNPPNLDFFTDPAYDFSSWTPA
VQHTNDLVLYAEYIAFQNTYGGIIWSIDNQRTPRADQGFIYHRVILPFC*
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mRNA from alignment at tig00000056_pilon:818840..820274+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6879.t1 ID=Ggra6879.t1|Name=Ggra6879.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1435bp|location=Sequence derived from alignment at tig00000056_pilon:818840..820274+ (Gracilaria gracilis GNS1m male)
ATGATGCTTCACGCCCTCGTCACCACGGCTTTGATCGCCTTCGCTTCCGC
CCACTGCATCTACACTGATACCGAATGCGTTTGCACCCAGGCTCAGTCTG
GTCGAACCTGTCTCCGTTACTACAGCGGTTCCGGAGCCTCTACCCAGTGC
GAGACCTACGAATGTGGCACCGGCTTTGTCTGTGATTGTACGTACGCACA
CCCCCTGTTTCTATTTGCTTGATCGCCGCTAACCTCCTTATTTGTCCTTC
TCCCGACTTGAACTCTTACCAGGTGCCGGAACTGAAATGTGTGACGTTAC
CGATTGCAGCCTCATGCGCACCGTGTACCGCCCCGTTGGCGCGGCCCCAT
CCGGCTTTGGTCAGATCGTTGACTGTGAGCTCGCCACTCAAGTCACTTGC
GTCACCCCCAGAAACGAGGCCGCTCCCTCACCGGATCACTCCCCGGATCA
CTCGCCGTCTCCTATGCCGAGCTCGTCTTCCTCCCCGGCTCCGTCGTCGT
CGTCGTCCCCGGCCCCGTCGTCCCCGGCCCCGTCTTCATCCTCCTCGCCG
GTGCCTTCGTCTTCCTCCTCTCCGGCGCCTTCAGCATCCTCTTCCCCGGC
GGCTTCGGCGTCTTCCTCCCCGGCTGCCTCACCATCGACATCCTCTTCTC
CGGCTGCTTCGGCGTCCTCTTCCCCGGCTGCTTCGGCTTCATCTTCCCCG
GCGCCTTCTTCCTCCTCTTCCCCGGCTCCCTCCGCATCCGCATCTCCGTC
TGCGAGCGCGTCTGCCACTCCTTCTGCGTCGGCCTCTCCCACTCCATCCA
ACTCTCCGGCGCCCTCGCCTTCATCCACTCCATCGGCCACGCCTTCCGTC
TCTCCTACCCCGTCTAGCGCGGCTACCATTCCTCTCGGCGGCGTCTGTAC
TCCTACCGACACATGCGAAACTGGAGCTGCATGCTCTTGCACTGGATTCT
GCGCACGTATTATTAACATTGAGATTGAAGCGATTGCAGATGACAGTGTT
GTACCGATGATGTGCGGAACGGAACTTGGTCCACCCACCCCCGATAACAT
CATCGCTGGAAGCTACACATACTCTGGTGTTTGCGATGATCTCTACTACC
GTGTGAACAACCAGGGTGGTATCTGGGATGGTCTCCTTACTGCCGTTCGT
GATGTCAACACCAACACGTACTATCCTTCCGTTCTTCCGCCAAACTCTGG
TATCACTGCCATCTCGAGACAGAACCCGCCCAACTTGGACTTCTTTACTG
ATCCGGCATATGACTTCAGCAGTTGGACTCCGGCTGTGCAGCACACCAAC
GACCTTGTCCTGTACGCGGAGTACATCGCTTTCCAAAACACTTATGGCGG
TATTATCTGGAGTATCGACAACCAGCGAACGCCACGCGCTGACCAAGGTT
TCATCTACCACAGGGTTATCCTTCCGTTCTGTTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:818840..820274+

>Ggra6879.t1 ID=Ggra6879.t1|Name=Ggra6879.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1350bp|location=Sequence derived from alignment at tig00000056_pilon:818840..820274+ (Gracilaria gracilis GNS1m male)
ATGATGCTTCACGCCCTCGTCACCACGGCTTTGATCGCCTTCGCTTCCGC
CCACTGCATCTACACTGATACCGAATGCGTTTGCACCCAGGCTCAGTCTG
GTCGAACCTGTCTCCGTTACTACAGCGGTTCCGGAGCCTCTACCCAGTGC
GAGACCTACGAATGTGGCACCGGCTTTGTCTGTGATTGTGCCGGAACTGA
AATGTGTGACGTTACCGATTGCAGCCTCATGCGCACCGTGTACCGCCCCG
TTGGCGCGGCCCCATCCGGCTTTGGTCAGATCGTTGACTGTGAGCTCGCC
ACTCAAGTCACTTGCGTCACCCCCAGAAACGAGGCCGCTCCCTCACCGGA
TCACTCCCCGGATCACTCGCCGTCTCCTATGCCGAGCTCGTCTTCCTCCC
CGGCTCCGTCGTCGTCGTCGTCCCCGGCCCCGTCGTCCCCGGCCCCGTCT
TCATCCTCCTCGCCGGTGCCTTCGTCTTCCTCCTCTCCGGCGCCTTCAGC
ATCCTCTTCCCCGGCGGCTTCGGCGTCTTCCTCCCCGGCTGCCTCACCAT
CGACATCCTCTTCTCCGGCTGCTTCGGCGTCCTCTTCCCCGGCTGCTTCG
GCTTCATCTTCCCCGGCGCCTTCTTCCTCCTCTTCCCCGGCTCCCTCCGC
ATCCGCATCTCCGTCTGCGAGCGCGTCTGCCACTCCTTCTGCGTCGGCCT
CTCCCACTCCATCCAACTCTCCGGCGCCCTCGCCTTCATCCACTCCATCG
GCCACGCCTTCCGTCTCTCCTACCCCGTCTAGCGCGGCTACCATTCCTCT
CGGCGGCGTCTGTACTCCTACCGACACATGCGAAACTGGAGCTGCATGCT
CTTGCACTGGATTCTGCGCACGTATTATTAACATTGAGATTGAAGCGATT
GCAGATGACAGTGTTGTACCGATGATGTGCGGAACGGAACTTGGTCCACC
CACCCCCGATAACATCATCGCTGGAAGCTACACATACTCTGGTGTTTGCG
ATGATCTCTACTACCGTGTGAACAACCAGGGTGGTATCTGGGATGGTCTC
CTTACTGCCGTTCGTGATGTCAACACCAACACGTACTATCCTTCCGTTCT
TCCGCCAAACTCTGGTATCACTGCCATCTCGAGACAGAACCCGCCCAACT
TGGACTTCTTTACTGATCCGGCATATGACTTCAGCAGTTGGACTCCGGCT
GTGCAGCACACCAACGACCTTGTCCTGTACGCGGAGTACATCGCTTTCCA
AAACACTTATGGCGGTATTATCTGGAGTATCGACAACCAGCGAACGCCAC
GCGCTGACCAAGGTTTCATCTACCACAGGGTTATCCTTCCGTTCTGTTAA
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