Ggra6780.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6780.t1
Unique NameGgra6780.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length218
Homology
BLAST of Ggra6780.t1 vs. uniprot
Match: A0A2V3IPQ1 (Fucoxanthin-chlorophyll a-c binding protein A, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPQ1_9FLOR)

HSP 1 Score: 381 bits (979), Expect = 4.500e-133
Identity = 184/217 (84.79%), Postives = 198/217 (91.24%), Query Frame = 0
Query:    1 MVAFIPALSLGARPALTRSSICGARLSATPVSRGVVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAFSDLVDIKWLQEAEIKHGRVCMLAFLGILVQEFLHLPGPEFTNPVATEAVFQVPAAGLWQILLFCGLCEFILHKGKITYLNMFEDDAVPGELGFNPMGLKFNDRTKLQELKNGRLAMCGVGGVIHSMLLYKVPVIAQLLDFKPMSLPYY 217
            MVAFIPAL+LG+RPAL RSSICGA+LS T VSRG VRM+E SPSVPFL KP+NLSEDM GYAGFDPFA SD +D+KWLQ+AEIKHGRVCMLAFLG LVQEF+HLPGPEF NPVATEA+FQVPAAGLWQI LFCGL EFI HKGKITY+NMFED AVPGELGFNPMGLK  +R KLQE+KNGRLAM GVGGVIHSMLLYKVPVIAQLLDFKPM+LPYY
Sbjct:    1 MVAFIPALALGSRPALARSSICGAQLSHTAVSRGAVRMSESSPSVPFLAKPRNLSEDMPGYAGFDPFALSDNIDVKWLQQAEIKHGRVCMLAFLGFLVQEFVHLPGPEFANPVATEALFQVPAAGLWQIFLFCGLMEFIGHKGKITYVNMFEDGAVPGELGFNPMGLKITERVKLQEIKNGRLAMVGVGGVIHSMLLYKVPVIAQLLDFKPMALPYY 217          
BLAST of Ggra6780.t1 vs. uniprot
Match: Q7X8N6 (Light-harvest protein n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7X8N6_GRIJA)

HSP 1 Score: 322 bits (824), Expect = 1.840e-109
Identity = 152/215 (70.70%), Postives = 177/215 (82.33%), Query Frame = 0
Query:    1 MVAFIPALSLGARPALTRSSICGARLSATPV-SRGVVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAFSDLVDIKWLQEAEIKHGRVCMLAFLGILVQEFLHLPGPEFTNPVATEAVFQVPAAGLWQILLFCGLCEFILHKGKITYLNMFEDDAVPGELGFNPMGLKFNDRTKLQELKNGRLAMCGVGGVIHSMLLYKVPVIAQLLDFKPMSL 214
            M AF+PALSL ARP L+RS++CGA +SA    +   V M+++SPSVPFLPKPKNLSEDMVGY GFDP   S+LVDIKWLQE+EIKHGRVCMLA  GIL QEF+HLP P + NP+ATEA+ QVP+A LWQI LFCGL EF+LHKGKI+Y++MF D AVPGELGFNPM LK +D  KL+E+KNGRLAMC VGG IHSM +YK P+IAQLLDFKP  L
Sbjct:    1 MAAFVPALSLAARPTLSRSALCGAAVSAAVAPAPSAVSMSDLSPSVPFLPKPKNLSEDMVGYTGFDPLGLSNLVDIKWLQESEIKHGRVCMLAVAGILAQEFVHLPDPRYANPLATEALNQVPSAALWQIFLFCGLAEFVLHKGKISYVDMFSDGAVPGELGFNPMNLKISDDMKLKEIKNGRLAMCAVGGFIHSMFIYKTPIIAQLLDFKPYPL 215          
BLAST of Ggra6780.t1 vs. uniprot
Match: Q7XY90 (Light-harvest protein n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY90_GRIJA)

HSP 1 Score: 266 bits (681), Expect = 9.210e-88
Identity = 132/217 (60.83%), Postives = 160/217 (73.73%), Query Frame = 0
Query:    1 MVAFIPALSLGARPALTRSSICGARLSATPVSRG--VVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAFSDLVDIKWLQEAEIKHGRVCMLAFLGILVQEFLHLPGPEFTNPVATEAVFQVPAAGLWQILLFCGLCEFILHKGKITYLNMFEDDAVPGELGFNPMGLKFNDRTKLQELKNGRLAMCGVGGVIHSMLLYKVPVIAQLLDFKPMSLP 215
            M AF+P L     P L+RSS+ GA LS  P +     V M+E S SVPFL KP+NL + ++GY GFDP  F+  VD +W+QEAEIKHGRV MLA LG+LVQEF+HLP   F NP+ATEA FQVP+AGL+QI LFCG  E  LHKGK++  +MF D A PGELGFNPM L  +D  +L+E+KNGRLAMC  GG IHSMLLYK P+IAQLLDF+P+ +P
Sbjct:    1 MNAFVPTL-----PLLSRSSLGGASLSVAPRASAPATVSMSERSASVPFLKKPENLPDTLIGYTGFDPLNFTGRVDYRWMQEAEIKHGRVSMLAVLGMLVQEFIHLPAKGFENPLATEAFFQVPSAGLFQIFLFCGFAELYLHKGKLSPSDMFSDGATPGELGFNPMNLDVSDSLRLKEIKNGRLAMCASGGFIHSMLLYKTPIIAQLLDFQPLKVP 212          
BLAST of Ggra6780.t1 vs. uniprot
Match: R7QPP5 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPP5_CHOCR)

HSP 1 Score: 247 bits (630), Expect = 1.150e-78
Identity = 109/152 (71.71%), Postives = 129/152 (84.87%), Query Frame = 0
Query:   63 GFDPFAFSDLVDIKWLQEAEIKHGRVCMLAFLGILVQEFLHLPGPEFTNPVATEAVFQVPAAGLWQILLFCGLCEFILHKGKITYLNMFEDDAVPGELGFNPMGLKFNDRTKLQELKNGRLAMCGVGGVIHSMLLYKVPVIAQLLDFKPMSL 214
            GFDP A S L+D+KWLQE+EIKHGR+CMLAFLG+LVQEF+HLP   F+NPVATEA+ QVPA GLWQI +FCG+ EFILHKG+++Y +MF D A PG+LGFNPM LK  DR +L E+KNGRLAMCGVGGVIHSM +YK P++AQLLDFK M L
Sbjct:  156 GFDPLALSQLMDVKWLQESEIKHGRICMLAFLGMLVQEFVHLPNAAFSNPVATEALGQVPAGGLWQIFIFCGISEFILHKGRVSYTDMFTDGAEPGKLGFNPMNLKITDRIRLAEIKNGRLAMCGVGGVIHSMFIYKTPIVAQLLDFKAMPL 307          
BLAST of Ggra6780.t1 vs. uniprot
Match: A0A1X6NTR2 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTR2_PORUM)

HSP 1 Score: 233 bits (593), Expect = 2.300e-74
Identity = 110/204 (53.92%), Postives = 141/204 (69.12%), Query Frame = 0
Query:   15 ALTRSSICGARLSATPVSRGVVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAFSDLVDIKWLQEAEIKHGRVCMLAFLGILVQEFLHLPGPEFTNPVATEAVFQVPAAGLWQILLFCGLCEFILHKGKITYLNMFEDDAVPGELGFNPMGL-----KFNDRTKLQELKNGRLAMCGVGGVIHSMLLYKVPVIAQLLDFKPMS 213
            A+  +S  GAR+ +   S   V MA  S SVPFLP+P      M G  GFDP   S  +DIKWL+E E+K+GRV MLAFLG+LVQEF+HLP P F NPVAT+A FQVPA GLWQ+ L CGLCEF+ H+GK++Y +MFED  +PG  GF+P+GL         + +L E+KNGRLAM G+GGVIHS  +Y  P+++QL  F P++
Sbjct:    8 AIRPTSFIGARVCSVAPSAATVTMAARSASVPFLPQPAACDGSMAGDVGFDPLNLSGFIDIKWLREGELKNGRVAMLAFLGVLVQEFVHLPSPLFANPVATDAFFQVPAGGLWQVFLACGLCEFVSHRGKLSYDDMFEDGRIPGNFGFDPLGLYKGTPAQKKKLELAEVKNGRLAMIGIGGVIHSNFIYHQPIVSQLTHFVPIT 211          
BLAST of Ggra6780.t1 vs. uniprot
Match: A0A7S0T6N2 (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6N2_9RHOD)

HSP 1 Score: 207 bits (526), Expect = 2.850e-64
Identity = 108/205 (52.68%), Postives = 137/205 (66.83%), Query Frame = 0
Query:   19 SSICGARLSATPVSRG--VVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAFSDLVDIKWLQEAEIKHGRVCMLAFLGILVQEFLHLPGPEFTNPVATEAVFQVPAAGLWQILLFCGLCEFILHKGKITYLNMFEDDAVPGELGFNPMGL-----KFNDRTKLQELKNGRLAMCGVGGVIHSMLLYKVPVIAQLLDFKPMSLPY 216
            S   GAR+S   V R   VV MAE S SVPFL KP N+ E MVGY GFDP   S  +  ++LQE+EIKHGR+CMLA +G LVQE +HLPG  F+  +ATEA  +VP  GLWQI + CG+ E+I HKGK+TY+++  D   PG +GF+P+ L     KF  + +L E+KNGRLAM  +GG IH M L K  V+ QL +FK  SLP+
Sbjct:    9 SGFSGARVSTAAVCRSSNVVMMAEKSASVPFLSKPANIDESMVGYTGFDPLGLSTYLSARFLQESEIKHGRICMLAVVGFLVQEVVHLPGEVFSAKLATEAFSKVPTGGLWQIFIACGVAEYIGHKGKMTYMDISADKGTPGAMGFDPLNLGKDPEKFK-KFQLNEIKNGRLAMIAIGGFIHQMWLTKQGVLEQLGNFK--SLPF 210          
BLAST of Ggra6780.t1 vs. uniprot
Match: Q9FDZ6 (Light-harvesting protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FDZ6_GALSU)

HSP 1 Score: 198 bits (504), Expect = 1.110e-60
Identity = 100/179 (55.87%), Postives = 127/179 (70.95%), Query Frame = 0
Query:   42 SPSVPFLPKPKNLSEDMVGYAGFDPFAFSDLVDIKWLQEAEIKHGRVCMLAFLGILVQEFLHLPGPEFTNPVATEAVFQVPAAGLWQILLFCGLCEFILHKGKITYLNMFED-DAVPGELGFNPMGLKFNDRTK----LQELKNGRLAMCGVGGVIHSMLLYKVPVIAQLLDFKPMSLP 215
            SPSVPFL +P+NL     G  GFDP   SDL+DI+WL+E+EIKHGR+ MLA LG +VQEF+HLPG  F+N VA +A FQVP  GLWQI LF GL EF+++KGK+T L+MF D +  PG+ GF+P+GL  + +T+    + E+KNGRLAM  VGG IH M L    V+ QL  F+  SLP
Sbjct:   48 SPSVPFLERPQNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRIAMLAALGFIVQEFVHLPGQVFSNKVAVDAFFQVPRGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQTRRRYQVAEIKNGRLAMLAVGGFIHHMFLTHQGVVEQLTHFR--SLP 224          
BLAST of Ggra6780.t1 vs. uniprot
Match: A0A5J4YSS5 (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSS5_PORPP)

HSP 1 Score: 195 bits (496), Expect = 1.060e-59
Identity = 102/219 (46.58%), Postives = 144/219 (65.75%), Query Frame = 0
Query:    2 VAFIPALSLG-ARPALTRSSICGARLSATPVSRGVVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAFSDLVDIKWLQEAEIKHGRVCMLAFLGILVQEFLHLPGPEFTNPVATEAVFQVPAAGLWQILLFCGLCEFILHKGKITYLNMFED-DAVPGELGFNPMGLKFND------RTKLQELKNGRLAMCGVGGVIHSMLLYKVPVIAQLLDFKPM 212
            +AF+  +  G ++  + + S+C A  +A       ++M   S SVPFL KP+ L   M G  GFDP  FS+ + +++L+E+EIKHGRV MLA LGI +QE +HLPG EF+NP+ATEA FQVPA G+ QI L CGL EFI H+GK+TY+++  D +  PG +GF+P+ +          + +L E+KNGRLAM GVGG+IH+M +   P + QL  FKP+
Sbjct:    1 MAFVSGVGSGLSQSRVAQRSVCKANGAA-------LKMEGKSASVPFLTKPEKLDGSMAGDVGFDPLGFSNYLSLEYLRESEIKHGRVAMLACLGIWIQEIVHLPGKEFSNPLATEAFFQVPAGGIAQIFLACGLAEFIGHRGKMTYMDIAADKERKPGAMGFDPLNMSKGKSAEAMKKLELNEVKNGRLAMIGVGGLIHAMFISHQPTLFQLAHFKPL 212          
BLAST of Ggra6780.t1 vs. uniprot
Match: L1IG53 (Light-harvesting Chl a protein 9 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IG53_GUITC)

HSP 1 Score: 185 bits (469), Expect = 1.660e-55
Identity = 93/176 (52.84%), Postives = 113/176 (64.20%), Query Frame = 0
Query:   23 GARLSATPVSRGVVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAFSDLVDIKWLQEAEIKHGRVCMLAFLGILVQEFLHLPGPEFTNPVATEAVFQVPAAGLWQILLFCGLCEFILHKGKITYLNMFEDDAVPGELGFNPMGLKFND----RTKLQELKNGRLAMCGVGGVIHS 194
            G R   + VS   ++M ++S SVPFLP+P  L   MVG  GFDPF FS   DIKWL+E+E+KHGRVCMLA LG +VQEF+HLP    +NPV +EA +QVPA GLWQI  F G  E   H  K++   MF D   PG  GF+P+G   N     R +L ELKNGRLAM G  G+IH 
Sbjct:   25 GVRAKTSAVSG--MKMQQMSQSVPFLPRPAALDGKMVGDVGFDPFGFSSKYDIKWLRESELKHGRVCMLASLGYIVQEFVHLPFEATSNPVGSEAFYQVPAGGLWQIFAFIGAIEHFSHNFKMSGSTMFSDGRTPGNFGFDPLGFGKNPQARARYELAELKNGRLAMLGFSGMIHG 198          
BLAST of Ggra6780.t1 vs. uniprot
Match: A0A7S0ZFM3 (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZFM3_9RHOD)

HSP 1 Score: 181 bits (460), Expect = 5.640e-54
Identity = 88/176 (50.00%), Postives = 120/176 (68.18%), Query Frame = 0
Query:   42 SPSVPFLPKPKNLSEDMVGYAGFDPFAFSDLVDIKWLQEAEIKHGRVCMLAFLGILVQEFLHLPGPEFTNPVATEAVFQVPAAGLWQILLFCGLCEFILHKGKITYLNMFEDD-AVPGELGFNPMGLKFND----RTKLQELKNGRLAMCGVGGVIHSMLLYKVPVIAQLLDFKPM 212
            S SVPFL KP NL   + G  GFDP  FS+ + +K+L+E+E+KHGR+CMLA LG LVQ+ + LPG  F   ++ +A+++VP+ GLWQI +  G+ EFI HKGK+TY++M  D  A  G +GF+P+ L  N     R  L E+KNGRLAM  VGG IH M + K  V+ QL++FKP+
Sbjct:   58 SASVPFLSKPVNLDGSLAGDVGFDPLGFSNYLSLKYLRESELKHGRICMLAALGFLVQDIIRLPGEPFKAKLSVDAIYKVPSEGLWQIFIAIGILEFIGHKGKMTYMDMKNDSPATAGAMGFDPLNLGKNPESLKRYALAEVKNGRLAMIAVGGFIHQMWVTKQTVLGQLVNFKPL 233          
The following BLAST results are available for this feature:
BLAST of Ggra6780.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPQ14.500e-13384.79Fucoxanthin-chlorophyll a-c binding protein A, chl... [more]
Q7X8N61.840e-10970.70Light-harvest protein n=1 Tax=Griffithsia japonica... [more]
Q7XY909.210e-8860.83Light-harvest protein n=1 Tax=Griffithsia japonica... [more]
R7QPP51.150e-7871.71Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NTR22.300e-7453.92Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0T6N22.850e-6452.68Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
Q9FDZ61.110e-6055.87Light-harvesting protein n=1 Tax=Galdieria sulphur... [more]
A0A5J4YSS51.060e-5946.58Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
L1IG531.660e-5552.84Light-harvesting Chl a protein 9 n=2 Tax=Guillardi... [more]
A0A7S0ZFM35.640e-5450.00Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 51..194
e-value: 3.4E-36
score: 125.2
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 47..214
e-value: 1.2E-38
score: 135.0
NoneNo IPR availablePANTHERPTHR21649:SF125CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTICcoord: 14..205
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..217
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 35..209
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 14..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:493364..494017 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6780.t1Ggra6780.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 493364..494017 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6780.t1 ID=Ggra6780.t1|Name=Ggra6780.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=218bp
MVAFIPALSLGARPALTRSSICGARLSATPVSRGVVRMAEVSPSVPFLPK
PKNLSEDMVGYAGFDPFAFSDLVDIKWLQEAEIKHGRVCMLAFLGILVQE
FLHLPGPEFTNPVATEAVFQVPAAGLWQILLFCGLCEFILHKGKITYLNM
FEDDAVPGELGFNPMGLKFNDRTKLQELKNGRLAMCGVGGVIHSMLLYKV
PVIAQLLDFKPMSLPYY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln