Ggra6780.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6780.t1
Unique NameGgra6780.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:493364..494017 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703151.1
Preferred nameLhcr1
PFAMsChloroa_b-bind
Max annot lvl2759|Eukaryota
KEGG koko:K08907,ko:K08910
KEGG Pathwayko00196,map00196
Evalue2.99e-65
EggNOG OGs2D9V2@1|root,2S5EH@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6780Ggra6780Gracilaria gracilis GNS1m malegenetig00000056_pilon 493364..494017 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6780.t1.start1Ggra6780.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 493364..493366 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6780.t1.CDS1Ggra6780.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 493364..494017 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6780.t1.exon1Ggra6780.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 493364..494017 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6780.t1.stop1Ggra6780.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 494015..494017 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6780.t1Ggra6780.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 493364..494017 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6780.t1 ID=Ggra6780.t1|Name=Ggra6780.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=218bp
MVAFIPALSLGARPALTRSSICGARLSATPVSRGVVRMAEVSPSVPFLPK
PKNLSEDMVGYAGFDPFAFSDLVDIKWLQEAEIKHGRVCMLAFLGILVQE
FLHLPGPEFTNPVATEAVFQVPAAGLWQILLFCGLCEFILHKGKITYLNM
FEDDAVPGELGFNPMGLKFNDRTKLQELKNGRLAMCGVGGVIHSMLLYKV
PVIAQLLDFKPMSLPYY*
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spliced messenger RNA

>Ggra6780.t1 ID=Ggra6780.t1|Name=Ggra6780.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000056_pilon:493364..494017+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGCCTTCATCCCCGCCCTTTCCCTCGGCGCACGCCCGGCCTTGAC
TCGCTCCTCGATATGCGGTGCACGACTGTCCGCCACGCCCGTTTCCCGTG
GCGTTGTTCGCATGGCTGAGGTTTCACCATCCGTGCCGTTCCTTCCGAAG
CCGAAGAACCTGTCCGAGGACATGGTAGGCTACGCAGGATTTGACCCGTT
CGCCTTCTCCGACTTGGTTGACATCAAGTGGCTTCAAGAGGCTGAAATCA
AGCACGGTCGCGTGTGCATGCTTGCTTTCCTCGGTATTCTCGTTCAGGAG
TTTTTGCATCTGCCGGGGCCGGAGTTCACTAACCCTGTGGCTACTGAGGC
TGTCTTCCAGGTTCCTGCCGCTGGGTTGTGGCAGATCTTATTGTTCTGTG
GTTTGTGTGAGTTCATTCTTCACAAGGGAAAAATTACTTATCTTAACATG
TTTGAGGATGATGCTGTTCCTGGCGAGCTTGGATTCAACCCGATGGGACT
CAAGTTCAATGACAGGACTAAGCTGCAGGAACTTAAGAACGGCAGATTGG
CCATGTGTGGTGTTGGCGGCGTCATTCACTCTATGCTTCTTTACAAGGTG
CCGGTGATTGCACAGCTGCTGGACTTCAAGCCCATGTCATTGCCGTACTA
TTAA
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protein sequence of Ggra6780.t1

>Ggra6780.t1 ID=Ggra6780.t1|Name=Ggra6780.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=218bp
MVAFIPALSLGARPALTRSSICGARLSATPVSRGVVRMAEVSPSVPFLPK
PKNLSEDMVGYAGFDPFAFSDLVDIKWLQEAEIKHGRVCMLAFLGILVQE
FLHLPGPEFTNPVATEAVFQVPAAGLWQILLFCGLCEFILHKGKITYLNM
FEDDAVPGELGFNPMGLKFNDRTKLQELKNGRLAMCGVGGVIHSMLLYKV
PVIAQLLDFKPMSLPYY*
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mRNA from alignment at tig00000056_pilon:493364..494017+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6780.t1 ID=Ggra6780.t1|Name=Ggra6780.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=654bp|location=Sequence derived from alignment at tig00000056_pilon:493364..494017+ (Gracilaria gracilis GNS1m male)
ATGGTCGCCTTCATCCCCGCCCTTTCCCTCGGCGCACGCCCGGCCTTGAC
TCGCTCCTCGATATGCGGTGCACGACTGTCCGCCACGCCCGTTTCCCGTG
GCGTTGTTCGCATGGCTGAGGTTTCACCATCCGTGCCGTTCCTTCCGAAG
CCGAAGAACCTGTCCGAGGACATGGTAGGCTACGCAGGATTTGACCCGTT
CGCCTTCTCCGACTTGGTTGACATCAAGTGGCTTCAAGAGGCTGAAATCA
AGCACGGTCGCGTGTGCATGCTTGCTTTCCTCGGTATTCTCGTTCAGGAG
TTTTTGCATCTGCCGGGGCCGGAGTTCACTAACCCTGTGGCTACTGAGGC
TGTCTTCCAGGTTCCTGCCGCTGGGTTGTGGCAGATCTTATTGTTCTGTG
GTTTGTGTGAGTTCATTCTTCACAAGGGAAAAATTACTTATCTTAACATG
TTTGAGGATGATGCTGTTCCTGGCGAGCTTGGATTCAACCCGATGGGACT
CAAGTTCAATGACAGGACTAAGCTGCAGGAACTTAAGAACGGCAGATTGG
CCATGTGTGGTGTTGGCGGCGTCATTCACTCTATGCTTCTTTACAAGGTG
CCGGTGATTGCACAGCTGCTGGACTTCAAGCCCATGTCATTGCCGTACTA
TTAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:493364..494017+

>Ggra6780.t1 ID=Ggra6780.t1|Name=Ggra6780.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=654bp|location=Sequence derived from alignment at tig00000056_pilon:493364..494017+ (Gracilaria gracilis GNS1m male)
ATGGTCGCCTTCATCCCCGCCCTTTCCCTCGGCGCACGCCCGGCCTTGAC
TCGCTCCTCGATATGCGGTGCACGACTGTCCGCCACGCCCGTTTCCCGTG
GCGTTGTTCGCATGGCTGAGGTTTCACCATCCGTGCCGTTCCTTCCGAAG
CCGAAGAACCTGTCCGAGGACATGGTAGGCTACGCAGGATTTGACCCGTT
CGCCTTCTCCGACTTGGTTGACATCAAGTGGCTTCAAGAGGCTGAAATCA
AGCACGGTCGCGTGTGCATGCTTGCTTTCCTCGGTATTCTCGTTCAGGAG
TTTTTGCATCTGCCGGGGCCGGAGTTCACTAACCCTGTGGCTACTGAGGC
TGTCTTCCAGGTTCCTGCCGCTGGGTTGTGGCAGATCTTATTGTTCTGTG
GTTTGTGTGAGTTCATTCTTCACAAGGGAAAAATTACTTATCTTAACATG
TTTGAGGATGATGCTGTTCCTGGCGAGCTTGGATTCAACCCGATGGGACT
CAAGTTCAATGACAGGACTAAGCTGCAGGAACTTAAGAACGGCAGATTGG
CCATGTGTGGTGTTGGCGGCGTCATTCACTCTATGCTTCTTTACAAGGTG
CCGGTGATTGCACAGCTGCTGGACTTCAAGCCCATGTCATTGCCGTACTA
TTAA
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