Ggra6835.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6835.t1
Unique NameGgra6835.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length303
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:638433..639341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D8LNF5
Max annot lvl2759|Eukaryota
Evalue2.25e-13
EggNOG OGs2E99Q@1|root,2SFNQ@2759|Eukaryota
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6835Ggra6835Gracilaria gracilis GNS1m malegenetig00000056_pilon 638433..639341 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6835.t1.start1Ggra6835.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 638433..638435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6835.t1.CDS1Ggra6835.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 638433..639341 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6835.t1.exon1Ggra6835.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 638433..639341 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6835.t1.stop1Ggra6835.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 639339..639341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6835.t1Ggra6835.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 638433..639341 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6835.t1 ID=Ggra6835.t1|Name=Ggra6835.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=303bp
MSSHSASRQPQGVLAEPEKQATGLSCSQPSEAPAQTQKTAPIDESSPGVP
VPTDARVASTGPPSTDDKGVEQGPSCGTSVSPSDIKHVEREVSPPLGSRI
EVLWRIEYDPDETDNMEVDSGTEGPQTVTRWWGATIQDCLTETVGSRCLQ
HSGKKVYVLLYDAFQEFGEDTATVAFISHDSLIDLSQLDDVNKGVLEWRM
ENACSKQAEPSSEDKAQLVSLEQYAAEVSAAVQGAGLSEEADLQILNSLP
PHVQAQVASGYRRFADHVKNSLATFMQEKPKDYIVTKADVQKMFASMHPK
PT*
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spliced messenger RNA

>Ggra6835.t1 ID=Ggra6835.t1|Name=Ggra6835.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000056_pilon:638433..639341+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTCGCACAGCGCCTCACGGCAGCCGCAGGGTGTCCTTGCTGAGCC
GGAGAAACAGGCAACAGGCTTGTCTTGCTCTCAGCCTTCCGAAGCTCCCG
CACAGACACAGAAAACCGCACCTATTGATGAATCATCGCCCGGTGTACCG
GTGCCAACGGACGCGAGGGTTGCTTCTACAGGCCCTCCTTCAACTGACGA
CAAGGGAGTGGAGCAAGGACCCTCATGCGGAACGAGTGTGTCACCGTCGG
ACATTAAACACGTCGAGAGAGAGGTCTCGCCCCCTTTAGGGAGTCGAATA
GAAGTTCTGTGGCGTATAGAATATGACCCTGACGAAACTGATAACATGGA
GGTTGATTCAGGCACAGAAGGTCCGCAGACAGTCACGAGATGGTGGGGAG
CTACCATTCAGGATTGTCTGACTGAGACAGTCGGTTCAAGGTGTCTGCAA
CACTCGGGCAAGAAGGTTTATGTCTTGCTTTATGATGCGTTTCAAGAGTT
TGGTGAGGATACCGCGACAGTGGCGTTCATTTCTCATGATAGTCTCATTG
ATCTTTCCCAGCTCGATGATGTGAACAAAGGCGTATTGGAGTGGCGAATG
GAAAACGCTTGCAGCAAACAAGCTGAACCAAGTTCTGAAGACAAGGCACA
GCTCGTCTCGCTTGAGCAATATGCAGCCGAGGTTTCCGCTGCCGTTCAGG
GTGCTGGACTAAGCGAGGAGGCAGATTTGCAGATTCTAAACTCATTACCA
CCTCACGTGCAGGCTCAGGTGGCATCAGGCTATCGACGTTTCGCGGATCA
CGTAAAGAATTCATTGGCAACATTCATGCAGGAGAAGCCAAAAGACTACA
TTGTAACCAAAGCGGATGTGCAGAAGATGTTTGCAAGCATGCATCCAAAA
CCAACATAA
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protein sequence of Ggra6835.t1

>Ggra6835.t1 ID=Ggra6835.t1|Name=Ggra6835.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=303bp
MSSHSASRQPQGVLAEPEKQATGLSCSQPSEAPAQTQKTAPIDESSPGVP
VPTDARVASTGPPSTDDKGVEQGPSCGTSVSPSDIKHVEREVSPPLGSRI
EVLWRIEYDPDETDNMEVDSGTEGPQTVTRWWGATIQDCLTETVGSRCLQ
HSGKKVYVLLYDAFQEFGEDTATVAFISHDSLIDLSQLDDVNKGVLEWRM
ENACSKQAEPSSEDKAQLVSLEQYAAEVSAAVQGAGLSEEADLQILNSLP
PHVQAQVASGYRRFADHVKNSLATFMQEKPKDYIVTKADVQKMFASMHPK
PT*
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mRNA from alignment at tig00000056_pilon:638433..639341+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6835.t1 ID=Ggra6835.t1|Name=Ggra6835.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=909bp|location=Sequence derived from alignment at tig00000056_pilon:638433..639341+ (Gracilaria gracilis GNS1m male)
ATGAGCTCGCACAGCGCCTCACGGCAGCCGCAGGGTGTCCTTGCTGAGCC
GGAGAAACAGGCAACAGGCTTGTCTTGCTCTCAGCCTTCCGAAGCTCCCG
CACAGACACAGAAAACCGCACCTATTGATGAATCATCGCCCGGTGTACCG
GTGCCAACGGACGCGAGGGTTGCTTCTACAGGCCCTCCTTCAACTGACGA
CAAGGGAGTGGAGCAAGGACCCTCATGCGGAACGAGTGTGTCACCGTCGG
ACATTAAACACGTCGAGAGAGAGGTCTCGCCCCCTTTAGGGAGTCGAATA
GAAGTTCTGTGGCGTATAGAATATGACCCTGACGAAACTGATAACATGGA
GGTTGATTCAGGCACAGAAGGTCCGCAGACAGTCACGAGATGGTGGGGAG
CTACCATTCAGGATTGTCTGACTGAGACAGTCGGTTCAAGGTGTCTGCAA
CACTCGGGCAAGAAGGTTTATGTCTTGCTTTATGATGCGTTTCAAGAGTT
TGGTGAGGATACCGCGACAGTGGCGTTCATTTCTCATGATAGTCTCATTG
ATCTTTCCCAGCTCGATGATGTGAACAAAGGCGTATTGGAGTGGCGAATG
GAAAACGCTTGCAGCAAACAAGCTGAACCAAGTTCTGAAGACAAGGCACA
GCTCGTCTCGCTTGAGCAATATGCAGCCGAGGTTTCCGCTGCCGTTCAGG
GTGCTGGACTAAGCGAGGAGGCAGATTTGCAGATTCTAAACTCATTACCA
CCTCACGTGCAGGCTCAGGTGGCATCAGGCTATCGACGTTTCGCGGATCA
CGTAAAGAATTCATTGGCAACATTCATGCAGGAGAAGCCAAAAGACTACA
TTGTAACCAAAGCGGATGTGCAGAAGATGTTTGCAAGCATGCATCCAAAA
CCAACATAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:638433..639341+

>Ggra6835.t1 ID=Ggra6835.t1|Name=Ggra6835.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=909bp|location=Sequence derived from alignment at tig00000056_pilon:638433..639341+ (Gracilaria gracilis GNS1m male)
ATGAGCTCGCACAGCGCCTCACGGCAGCCGCAGGGTGTCCTTGCTGAGCC
GGAGAAACAGGCAACAGGCTTGTCTTGCTCTCAGCCTTCCGAAGCTCCCG
CACAGACACAGAAAACCGCACCTATTGATGAATCATCGCCCGGTGTACCG
GTGCCAACGGACGCGAGGGTTGCTTCTACAGGCCCTCCTTCAACTGACGA
CAAGGGAGTGGAGCAAGGACCCTCATGCGGAACGAGTGTGTCACCGTCGG
ACATTAAACACGTCGAGAGAGAGGTCTCGCCCCCTTTAGGGAGTCGAATA
GAAGTTCTGTGGCGTATAGAATATGACCCTGACGAAACTGATAACATGGA
GGTTGATTCAGGCACAGAAGGTCCGCAGACAGTCACGAGATGGTGGGGAG
CTACCATTCAGGATTGTCTGACTGAGACAGTCGGTTCAAGGTGTCTGCAA
CACTCGGGCAAGAAGGTTTATGTCTTGCTTTATGATGCGTTTCAAGAGTT
TGGTGAGGATACCGCGACAGTGGCGTTCATTTCTCATGATAGTCTCATTG
ATCTTTCCCAGCTCGATGATGTGAACAAAGGCGTATTGGAGTGGCGAATG
GAAAACGCTTGCAGCAAACAAGCTGAACCAAGTTCTGAAGACAAGGCACA
GCTCGTCTCGCTTGAGCAATATGCAGCCGAGGTTTCCGCTGCCGTTCAGG
GTGCTGGACTAAGCGAGGAGGCAGATTTGCAGATTCTAAACTCATTACCA
CCTCACGTGCAGGCTCAGGTGGCATCAGGCTATCGACGTTTCGCGGATCA
CGTAAAGAATTCATTGGCAACATTCATGCAGGAGAAGCCAAAAGACTACA
TTGTAACCAAAGCGGATGTGCAGAAGATGTTTGCAAGCATGCATCCAAAA
CCAACATAA
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