Ggra6672.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Ggra6672.t1
Unique Name	Ggra6672.t1
Type	polypeptide
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	296

Homology

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BLAST of Ggra6672.t1 vs. uniprot
Match: A0A2V3IX46 (Nucleoporin NUP53 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX46_9FLOR)

HSP 1 Score: 451 bits (1160), Expect = 4.550e-158
Identity = 227/296 (76.69%), Postives = 250/296 (84.46%), Query Frame = 0

Query:    1 MFSSPNSKREDPPIRERLPNYLLSGTLTPNPDEQPSSSFYTPSKHTTQRRLSTRTETPPVFAPRTPLTFNDRLRPDKPLDEQHR-RTFTPSSKPRTPHVPPNKSLLDTGPPSVRVLRSPSASPAASLTPNSLSARTPTLGPQDRWITIFGFAPAMEAQALREFRRHGEIVRTIPGRGNWIHILYRTPLQAQVSLQRPWRVLAGTETMIGAVPCTEPNVAKLADEQIEKGMLIASPGAAHVSPFSHSMPVPSASPINPLKTPATMLRRESVASSTPTIIRTPQRQSGIFDFLSGLYR 295
            MF SP++ R+D    ERLPNYLLS + TP  D+  S  F TP+K+T QRRLSTR E P +FA RTPLTFNDRLRPD+P D     RTF PS+KPRTPHVPPNKSLLDTGPPSVRVLRSPSASPA SLTPNSLSARTPTLGPQDRWIT+FGF PAMEAQALREFRRHGEIVRT+PG+GNW+HILYRTPLQAQV+LQRPWR+LAGTETM+GA+PCTEPNVAKLADEQIEKGMLIASP  A  +PF    P PSA+PIN LKTP+TMLRRE    S PT+IRTPQRQSGIFDF SG Y+
Sbjct:    1 MFPSPSNARDDDHTTERLPNYLLSSSATPALDQPSSHLFQTPAKYTPQRRLSTRPEAPQLFARRTPLTFNDRLRPDRPDDHSTASRTFMPSTKPRTPHVPPNKSLLDTGPPSVRVLRSPSASPATSLTPNSLSARTPTLGPQDRWITVFGFGPAMEAQALREFRRHGEIVRTMPGKGNWVHILYRTPLQAQVALQRPWRILAGTETMVGAMPCTEPNVAKLADEQIEKGMLIASPSVATSAPFGTPAPPPSATPINSLKTPSTMLRREPATVSEPTVIRTPQRQSGIFDFFSGFYK 296

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BLAST of Ggra6672.t1 vs. uniprot
Match: A0A7S0G7K2 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G7K2_9RHOD)

HSP 1 Score: 94.4 bits (233), Expect = 1.610e-18
Identity = 45/86 (52.33%), Postives = 61/86 (70.93%), Query Frame = 0

Query:  125 SLTPNSLSARTPTLGPQDRWITIFGFAPAMEAQALREFRRHGEIVRTIPGRGNWIHILYRTPLQAQVSLQRPWRVLAGTETMIGAV 210
            +LT  + S  TP     DRW+T+FGF  +M++  LREFR HGEI R + G+GNW+HILYRT LQAQV+L R  R++ G ET++G +
Sbjct:  188 NLTSPTASMGTPDPETADRWVTVFGFGQSMQSLILREFRNHGEIDRHVSGKGNWMHILYRTALQAQVALSRRVRLIGG-ETLVGVI 272

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BLAST of Ggra6672.t1 vs. uniprot
Match: A0A7J7IF51 (Nucleoporin n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IF51_9RHOD)

HSP 1 Score: 85.9 bits (211), Expect = 1.690e-15
Identity = 49/131 (37.40%), Postives = 69/131 (52.67%), Query Frame = 0

Query:   98 VPPNKSLLDT-----------GPPSVRVLRSPSASPAASLTPNSLSARTPTLGPQDRWITIFGFAPAMEAQALREFRRHGEIVRTIPGRGNWIHILYRTPLQAQVSLQRPWRVLAGTETMIGAVPCTEPNV 217
             PPN+S +DT           G P   + R    +PA   +P+S        G   RW+T+FGFAP  ++Q LRE R  G+++     +GNW+H+ + +PLQAQ +  R  R L     MIG VPCTEP +
Sbjct:  140 APPNESWMDTAHAAGRHRAETGTPMSNMARG-LFTPAPPASPDSSRTSPLQEGELSRWVTVFGFAPGQQSQVLRELRSFGQVLEHRLRKGNWMHVRFESPLQAQAACSRSSR-LVNDAMMIGIVPCTEPEL 268

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BLAST of Ggra6672.t1 vs. uniprot
Match: M1UT25 (RRM Nup35-type domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UT25_CYAM1)

HSP 1 Score: 83.6 bits (205), Expect = 1.120e-14
Identity = 54/150 (36.00%), Postives = 74/150 (49.33%), Query Frame = 0

Query:   78 PLDEQHRRTFTPSSKPRTPHVPPNKSLLDTGPPSVRVLRSPSASPAASLTPNSLSARTPTLGPQDR-----------WITIFGFAPAMEAQALREFRRHGEIVRTIPGRGNWIHILYRTPLQAQVSLQRPWRVLAGTETMIGAVPCTEPN 216
            PLD  +  +  PS +      PPN S LDT  P    L + + +   +L     +    T    DR           W+T+FGFAP  ++Q LRE R  G ++     +GNW+H+ Y +PLQAQ +  R  R+L    TMIG VPCTEP 
Sbjct:  123 PLDSGY--STGPSVRSAGGRAPPNTSWLDTETPVSSRLGAGAETTGPALARGLFTPGLRTTLDADRSSPLQESELACWVTVFGFAPGQQSQVLRELRSFGPVLEHRLRKGNWMHVRYESPLQAQAACSRSSRLLNDV-TMIGIVPCTEPE 269

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BLAST of Ggra6672.t1 vs. uniprot
Match: A0A7S1XBP0 (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XBP0_9RHOD)

HSP 1 Score: 68.9 bits (167), Expect = 1.040e-9
Identity = 29/39 (74.36%), Postives = 33/39 (84.62%), Query Frame = 0

Query:  144 WITIFGFAPAMEAQALREFRRHGEIVRTIPGRGNWIHIL 182
            WIT+FGF  AM++  LREFR HGEIVR IPG+GNWIHIL
Sbjct:  266 WITVFGFGSAMQSVVLREFRAHGEIVRHIPGKGNWIHIL 304

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BLAST of Ggra6672.t1 vs. uniprot
Match: nucleoporin NUP35-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D5DA (nucleoporin NUP35-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D5DA)

HSP 1 Score: 68.2 bits (165), Expect = 2.100e-9
Identity = 31/94 (32.98%), Postives = 59/94 (62.77%), Query Frame = 0

Query:  142 DRWITIFGFAPAMEAQALREFRRHGEIVRTIPG-RGNWIHILYRTPLQAQVSLQRPWRVLAGTETMIGAVPCTEPNVAKLADEQIEKGMLIASP 234
            + W+T+FGF P+  +  L++F ++G+I++ +    GNW+HI Y++ +QA+ +L +  ++  GT  M+G +PC + N+  L D +  K M   +P
Sbjct:  182 ETWVTVFGFVPSSMSFILQQFAQYGDIIKYVAATEGNWMHIHYKSRIQAKKALSKNGKIFEGT-IMVGVLPCIDKNI--LEDFRDAKDMSCTTP 272

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BLAST of Ggra6672.t1 vs. uniprot
Match: A0A5J4YR06 (Nucleoporin NUP53 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YR06_PORPP)

HSP 1 Score: 68.2 bits (165), Expect = 3.130e-9
Identity = 30/74 (40.54%), Postives = 49/74 (66.22%), Query Frame = 0

Query:  144 WITIFGFAPAMEAQALREFRRHGEIVRTI-PGRGNWIHILYRTPLQAQVSLQRPWRVLAGTETMIGAVPCTEPN 216
            W+T+FGF   + +  L EFR +G+++  + P RGNWIH+ YR+ ++AQV+L +  R+L G + M+G   CT  +
Sbjct:  332 WVTVFGFPSDLVSGVLGEFRSYGDVLNCVSPPRGNWIHVRYRSRIEAQVALSKRVRLLFG-DVMVGVCECTRTH 404

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BLAST of Ggra6672.t1 vs. uniprot
Match: A0A0D2VNR2 (RRM Nup35-type domain-containing protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VNR2_CAPO3)

HSP 1 Score: 63.5 bits (153), Expect = 6.440e-8
Identity = 50/158 (31.65%), Postives = 81/158 (51.27%), Query Frame = 0

Query:   95 TPHVPPNKSLLDTGPPSVRVLRSPSASPA-------ASLTPNSLSART---PTLGPQ--DRWITIFGFAPAMEAQALREFRRHGEIVRTI--PGRGNWIHILYRTPLQAQVSLQRPWRVLAGTETMIGAVPCTEPNVAKLADEQIEKGMLIASPGAAH 238
            T + PP +SL D    +V    +PSA+ A       A L  +S+ A +   P  G    D W+T+FGF P   +  L    + G+IVR +  P  GNW+H+ +++ LQA+ ++ R  +V+A +  M+G  PC +  V    D+    G+ + +P A H
Sbjct:  110 TAYAPPLESLYDDYDSAVP-FTAPSAAEAGFERSFAAHLPSDSIDALSDIAPAEGDNSLDVWVTVFGFPPTAASLVLSYLEQCGDIVRHMMAPDGGNWMHVRFKSHLQAERAISRNRKVVARS-IMLGVAPCEDRGVLA-GDKSAAAGLDLTAPRALH 264

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BLAST of Ggra6672.t1 vs. uniprot
Match: nucleoporin NUP53 n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20E35C (nucleoporin NUP53 n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20E35C)

HSP 1 Score: 61.2 bits (147), Expect = 3.780e-7
Identity = 39/118 (33.05%), Postives = 64/118 (54.24%), Query Frame = 0

Query:  144 WITIFGFAPAMEAQALREFRRHGEIV-RTIPGRGNWIHILYRTPLQAQVSLQRPWRVLAGTETMIGAVPCTEPNVAKLADEQIEKGMLIASPGAAHVSPFSHSMPVPSASPINPLKTP 260
            W+T+FGF P+  +  L +   +G IV +  P +GNWIH+ Y +PL+A  +L    ++++ +  MIG VP    N ++   E +E    +++P  A     S+  P PS SP+ P   P
Sbjct:  170 WVTVFGFPPSATSLVLAQLANYGSIVDKKFPTQGNWIHLKYSSPLEANKALALHGKLISNS-IMIGVVPFVNKNKSE-NKENMEND--VSTPVRARSLRQSYITPQPS-SPVVPQNVP 282

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BLAST of Ggra6672.t1 vs. uniprot
Match: A0A6A5C926 (RRM Nup35-type domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C926_NAEFO)

HSP 1 Score: 61.2 bits (147), Expect = 4.070e-7
Identity = 31/103 (30.10%), Postives = 54/103 (52.43%), Query Frame = 0

Query:  122 PAASLTPNSLSARTPTLGPQDRWITIFGFAPAMEAQALREFRRHGEIVRTIPGRGNWIHILYRTPLQAQVSLQRPWRVLAGTETMIGAVPCTEPNVAKLADEQ 224
            P   +T  +L++R   +     W+T+FGF P   +  L++F  +G I+      GN+IHI Y+T +QA  +L +  ++  G   MIG V C +  + +L   +
Sbjct:  146 PFYQVTDVALASRINDIVKDTTWVTVFGFPPDKTSYILKQFSNYGTIINHKITNGNFIHIQYKTRIQADKALSKNGKIFDGV-LMIGVVECLDTEILQLQQRE 247

The following BLAST results are available for this feature:

BLAST of Ggra6672.t1 vs. uniprot

BLAST of Ggra6672.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 10


Match Name	E-value	Identity	Description
A0A2V3IX46	4.550e-158	76.69	Nucleoporin NUP53 n=1 Tax=Gracilariopsis chorda Ta...	[more]
A0A7S0G7K2	1.610e-18	52.33	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]
A0A7J7IF51	1.690e-15	37.40	Nucleoporin n=1 Tax=Cyanidiococcus yangmingshanens...	[more]
M1UT25	1.120e-14	36.00	RRM Nup35-type domain-containing protein n=2 Tax=c...	[more]
A0A7S1XBP0	1.040e-9	74.36	Hypothetical protein n=1 Tax=Compsopogon caeruleus...	[more]
nucleoporin NUP35-like isoform X1 n=2 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D5DA	2.100e-9	32.98	nucleoporin NUP35-like isoform X1 n=2 Tax=Gigantop...	[more]
A0A5J4YR06	3.130e-9	40.54	Nucleoporin NUP53 n=1 Tax=Porphyridium purpureum T...	[more]
A0A0D2VNR2	6.440e-8	31.65	RRM Nup35-type domain-containing protein n=2 Tax=C...	[more]
nucleoporin NUP53 n=1 Tax=Onthophagus taurus TaxID=166361 RepID=UPI000C20E35C	3.780e-7	33.05	nucleoporin NUP53 n=1 Tax=Onthophagus taurus TaxID...	[more]
A0A6A5C926	4.070e-7	30.10	RRM Nup35-type domain-containing protein n=2 Tax=N...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 140..212 e-value: 4.5E-17 score: 63.8
IPR017389	Nucleoporin, NUP53	PIRSF	PIRSF038119	NUP53	coord: 106..290 e-value: 1.3E-21 score: 74.4 coord: 1..125 e-value: 1600.0 score: -5.3
IPR017389	Nucleoporin, NUP53	PANTHER	PTHR21527	NUCLEOPORIN NUP35	coord: 32..284
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PFAM	PF05172	Nup35_RRM	coord: 141..213 e-value: 1.6E-10 score: 40.8
IPR007846	RNA-recognition motif (RRM) Nup35-type domain	PROSITE	PS51472	RRM_NUP35	coord: 139..219 score: 22.361813
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..88
None	No IPR available	PANTHER	PTHR21527:SF6	NUCLEOPORIN NUP35	coord: 32..284
None	No IPR available	CDD	cd12441	RRM_Nup53_like	coord: 142..214 e-value: 1.20506E-21 score: 84.5854
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 141..215

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:155927..156814 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6672.t1	Ggra6672.t1	Gracilaria gracilis GNS1m male	mRNA	tig00000056_pilon 155927..156814 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Ggra6672.t1 ID=Ggra6672.t1|Name=Ggra6672.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MFSSPNSKREDPPIRERLPNYLLSGTLTPNPDEQPSSSFYTPSKHTTQRR
LSTRTETPPVFAPRTPLTFNDRLRPDKPLDEQHRRTFTPSSKPRTPHVPP
NKSLLDTGPPSVRVLRSPSASPAASLTPNSLSARTPTLGPQDRWITIFGF
APAMEAQALREFRRHGEIVRTIPGRGNWIHILYRTPLQAQVSLQRPWRVL
AGTETMIGAVPCTEPNVAKLADEQIEKGMLIASPGAAHVSPFSHSMPVPS
ASPINPLKTPATMLRRESVASSTPTIIRTPQRQSGIFDFLSGLYR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR017389	Nucleoporin_NUP53
IPR007846	RRM_NUP35_dom
IPR035979	RBD_domain_sf