Ggra6672.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6672.t1
Unique NameGgra6672.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length296
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:155927..156814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005709078.1
Preferred nameNUP35
PFAMsNup35_RRM
Max annot lvl2759|Eukaryota
KEGG koko:K14313
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003697,GO:0005198,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005652,GO:0005654,GO:0005886,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006606,GO:0006607,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0006997,GO:0006999,GO:0007088,GO:0007096,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009790,GO:0009792,GO:0009889,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010564,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0017038,GO:0017056,GO:0019219,GO:0019222,GO:0031090,GO:0031323,GO:0031326,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034097,GO:0034399,GO:0034504,GO:0034613,GO:0042221,GO:0042802,GO:0042803,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044613,GO:0044615,GO:0045184,GO:0046907,GO:0046983,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051128,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0071166,GO:0071310,GO:0071345,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0080090,GO:0097159,GO:1901363,GO:1901987,GO:1901990,GO:1903506,GO:1990823,GO:1990830,GO:2000112,GO:2001141
Evalue4.96e-21
EggNOG OGsKOG4285@1|root,KOG4285@2759|Eukaryota
Descriptionnuclear pore organization
COG categoryK
BRITEko00000,ko00001,ko00002,ko03019
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6672Ggra6672Gracilaria gracilis GNS1m malegenetig00000056_pilon 155927..156814 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6672.t1.start1Ggra6672.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 155927..155929 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6672.t1.CDS1Ggra6672.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 155927..156814 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6672.t1.exon1Ggra6672.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 155927..156814 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6672.t1.stop1Ggra6672.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 156812..156814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6672.t1Ggra6672.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 155927..156814 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6672.t1 ID=Ggra6672.t1|Name=Ggra6672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=296bp
MFSSPNSKREDPPIRERLPNYLLSGTLTPNPDEQPSSSFYTPSKHTTQRR
LSTRTETPPVFAPRTPLTFNDRLRPDKPLDEQHRRTFTPSSKPRTPHVPP
NKSLLDTGPPSVRVLRSPSASPAASLTPNSLSARTPTLGPQDRWITIFGF
APAMEAQALREFRRHGEIVRTIPGRGNWIHILYRTPLQAQVSLQRPWRVL
AGTETMIGAVPCTEPNVAKLADEQIEKGMLIASPGAAHVSPFSHSMPVPS
ASPINPLKTPATMLRRESVASSTPTIIRTPQRQSGIFDFLSGLYR*
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spliced messenger RNA

>Ggra6672.t1 ID=Ggra6672.t1|Name=Ggra6672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000056_pilon:155927..156814+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCGTCTCCCAACTCCAAGCGAGAAGATCCCCCCATCCGAGAACG
CCTTCCGAATTACCTCCTTTCCGGCACACTAACTCCCAATCCCGATGAGC
AACCGTCATCCTCCTTCTATACCCCGTCCAAACATACCACCCAACGTCGC
CTCTCCACGCGCACTGAAACGCCTCCCGTCTTCGCGCCCCGCACCCCATT
AACGTTCAACGATCGTCTACGACCAGACAAACCGCTAGATGAGCAACACC
GTCGTACATTTACTCCCTCGTCAAAACCAAGAACTCCGCATGTGCCACCC
AACAAATCGTTATTGGACACTGGTCCGCCTAGTGTGCGCGTTTTGCGCTC
GCCGTCTGCTTCCCCTGCTGCTTCTCTTACCCCCAACTCGCTTTCCGCCC
GCACGCCCACCCTCGGACCTCAAGATAGATGGATCACCATATTTGGCTTT
GCGCCCGCCATGGAAGCACAGGCTCTTCGCGAGTTCCGTCGCCACGGCGA
AATAGTGCGTACCATCCCAGGAAGAGGCAACTGGATACACATTCTTTATC
GAACCCCTTTACAAGCTCAAGTGTCTCTGCAGCGCCCGTGGCGAGTTTTG
GCAGGCACGGAGACTATGATTGGAGCAGTTCCATGTACCGAACCGAACGT
TGCCAAACTTGCGGATGAACAGATTGAGAAGGGCATGCTCATTGCATCCC
CGGGCGCGGCACATGTTAGCCCGTTTTCGCATTCAATGCCTGTACCTTCT
GCGTCGCCTATTAACCCGCTCAAGACGCCTGCGACTATGCTGAGGCGAGA
AAGTGTGGCTTCTTCCACCCCTACTATTATACGTACCCCGCAAAGACAGT
CAGGTATTTTTGACTTTCTTTCTGGTCTATATCGATAA
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protein sequence of Ggra6672.t1

>Ggra6672.t1 ID=Ggra6672.t1|Name=Ggra6672.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=296bp
MFSSPNSKREDPPIRERLPNYLLSGTLTPNPDEQPSSSFYTPSKHTTQRR
LSTRTETPPVFAPRTPLTFNDRLRPDKPLDEQHRRTFTPSSKPRTPHVPP
NKSLLDTGPPSVRVLRSPSASPAASLTPNSLSARTPTLGPQDRWITIFGF
APAMEAQALREFRRHGEIVRTIPGRGNWIHILYRTPLQAQVSLQRPWRVL
AGTETMIGAVPCTEPNVAKLADEQIEKGMLIASPGAAHVSPFSHSMPVPS
ASPINPLKTPATMLRRESVASSTPTIIRTPQRQSGIFDFLSGLYR*
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mRNA from alignment at tig00000056_pilon:155927..156814+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6672.t1 ID=Ggra6672.t1|Name=Ggra6672.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=888bp|location=Sequence derived from alignment at tig00000056_pilon:155927..156814+ (Gracilaria gracilis GNS1m male)
ATGTTTTCGTCTCCCAACTCCAAGCGAGAAGATCCCCCCATCCGAGAACG
CCTTCCGAATTACCTCCTTTCCGGCACACTAACTCCCAATCCCGATGAGC
AACCGTCATCCTCCTTCTATACCCCGTCCAAACATACCACCCAACGTCGC
CTCTCCACGCGCACTGAAACGCCTCCCGTCTTCGCGCCCCGCACCCCATT
AACGTTCAACGATCGTCTACGACCAGACAAACCGCTAGATGAGCAACACC
GTCGTACATTTACTCCCTCGTCAAAACCAAGAACTCCGCATGTGCCACCC
AACAAATCGTTATTGGACACTGGTCCGCCTAGTGTGCGCGTTTTGCGCTC
GCCGTCTGCTTCCCCTGCTGCTTCTCTTACCCCCAACTCGCTTTCCGCCC
GCACGCCCACCCTCGGACCTCAAGATAGATGGATCACCATATTTGGCTTT
GCGCCCGCCATGGAAGCACAGGCTCTTCGCGAGTTCCGTCGCCACGGCGA
AATAGTGCGTACCATCCCAGGAAGAGGCAACTGGATACACATTCTTTATC
GAACCCCTTTACAAGCTCAAGTGTCTCTGCAGCGCCCGTGGCGAGTTTTG
GCAGGCACGGAGACTATGATTGGAGCAGTTCCATGTACCGAACCGAACGT
TGCCAAACTTGCGGATGAACAGATTGAGAAGGGCATGCTCATTGCATCCC
CGGGCGCGGCACATGTTAGCCCGTTTTCGCATTCAATGCCTGTACCTTCT
GCGTCGCCTATTAACCCGCTCAAGACGCCTGCGACTATGCTGAGGCGAGA
AAGTGTGGCTTCTTCCACCCCTACTATTATACGTACCCCGCAAAGACAGT
CAGGTATTTTTGACTTTCTTTCTGGTCTATATCGATAA
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Coding sequence (CDS) from alignment at tig00000056_pilon:155927..156814+

>Ggra6672.t1 ID=Ggra6672.t1|Name=Ggra6672.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=888bp|location=Sequence derived from alignment at tig00000056_pilon:155927..156814+ (Gracilaria gracilis GNS1m male)
ATGTTTTCGTCTCCCAACTCCAAGCGAGAAGATCCCCCCATCCGAGAACG
CCTTCCGAATTACCTCCTTTCCGGCACACTAACTCCCAATCCCGATGAGC
AACCGTCATCCTCCTTCTATACCCCGTCCAAACATACCACCCAACGTCGC
CTCTCCACGCGCACTGAAACGCCTCCCGTCTTCGCGCCCCGCACCCCATT
AACGTTCAACGATCGTCTACGACCAGACAAACCGCTAGATGAGCAACACC
GTCGTACATTTACTCCCTCGTCAAAACCAAGAACTCCGCATGTGCCACCC
AACAAATCGTTATTGGACACTGGTCCGCCTAGTGTGCGCGTTTTGCGCTC
GCCGTCTGCTTCCCCTGCTGCTTCTCTTACCCCCAACTCGCTTTCCGCCC
GCACGCCCACCCTCGGACCTCAAGATAGATGGATCACCATATTTGGCTTT
GCGCCCGCCATGGAAGCACAGGCTCTTCGCGAGTTCCGTCGCCACGGCGA
AATAGTGCGTACCATCCCAGGAAGAGGCAACTGGATACACATTCTTTATC
GAACCCCTTTACAAGCTCAAGTGTCTCTGCAGCGCCCGTGGCGAGTTTTG
GCAGGCACGGAGACTATGATTGGAGCAGTTCCATGTACCGAACCGAACGT
TGCCAAACTTGCGGATGAACAGATTGAGAAGGGCATGCTCATTGCATCCC
CGGGCGCGGCACATGTTAGCCCGTTTTCGCATTCAATGCCTGTACCTTCT
GCGTCGCCTATTAACCCGCTCAAGACGCCTGCGACTATGCTGAGGCGAGA
AAGTGTGGCTTCTTCCACCCCTACTATTATACGTACCCCGCAAAGACAGT
CAGGTATTTTTGACTTTCTTTCTGGTCTATATCGATAA
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