Ggra6662.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6662.t1
Unique NameGgra6662.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length126
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:57658..58120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6662Ggra6662Gracilaria gracilis GNS1m malegenetig00000056_pilon 57658..59085 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6662.t1Ggra6662.t1Gracilaria gracilis GNS1m malepolypeptidetig00000056_pilon 57658..58120 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6662.t1.start1Ggra6662.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000056_pilon 57658..57660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6662.t1.CDS1Ggra6662.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000056_pilon 57658..57914 +
Ggra6662.t1.CDS2Ggra6662.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000056_pilon 58000..58120 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6662.t1.exon1Ggra6662.t1.exon1Gracilaria gracilis GNS1m maleexontig00000056_pilon 57658..57914 +
Ggra6662.t1.exon2Ggra6662.t1.exon2Gracilaria gracilis GNS1m maleexontig00000056_pilon 58000..58120 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6662.t1.intron1Ggra6662.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000056_pilon 57915..57999 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6662.t1.stop1Ggra6662.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000056_pilon 58118..58120 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6662.t1 ID=Ggra6662.t1|Name=Ggra6662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=126bp
MEPEPSAPAARVAHNHPNQNHPQRISSLPDALVALKQHVLPPSLQPDALR
ASHDLLARTVDAVNTADVTTLHAARAQLHPLHHFLAWCDARLRPAPCMPR
TDGSAPVAMPRDLSSILGIFLAQWR*
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spliced messenger RNA

>Ggra6662.t1 ID=Ggra6662.t1|Name=Ggra6662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=378bp|location=Sequence derived from alignment at tig00000056_pilon:57658..58120+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCCGAGCCATCGGCGCCCGCGGCGCGCGTGGCGCACAATCACCC
CAACCAGAACCACCCGCAGCGCATCTCGTCGCTGCCCGACGCGCTGGTGG
CGCTCAAGCAGCATGTGCTGCCGCCGTCTCTGCAGCCCGACGCGCTGCGC
GCGTCGCACGACCTGCTGGCCAGGACCGTGGACGCCGTCAACACCGCTGA
CGTAACCACGCTGCACGCCGCGCGCGCGCAGCTTCACCCGCTGCACCACT
TCCTGGCCTGGTGCGATGCACGCCTGCGTCCAGCGCCTTGCATGCCGCGC
ACCGATGGATCGGCGCCTGTCGCCATGCCGCGCGACTTGTCGTCGATACT
AGGAATCTTCCTGGCGCAATGGCGTTGA
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protein sequence of Ggra6662.t1

>Ggra6662.t1 ID=Ggra6662.t1|Name=Ggra6662.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=126bp
MEPEPSAPAARVAHNHPNQNHPQRISSLPDALVALKQHVLPPSLQPDALR
ASHDLLARTVDAVNTADVTTLHAARAQLHPLHHFLAWCDARLRPAPCMPR
TDGSAPVAMPRDLSSILGIFLAQWR*
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mRNA from alignment at tig00000056_pilon:57658..58120+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6662.t1 ID=Ggra6662.t1|Name=Ggra6662.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=463bp|location=Sequence derived from alignment at tig00000056_pilon:57658..58120+ (Gracilaria gracilis GNS1m male)
ATGGAGCCCGAGCCATCGGCGCCCGCGGCGCGCGTGGCGCACAATCACCC
CAACCAGAACCACCCGCAGCGCATCTCGTCGCTGCCCGACGCGCTGGTGG
CGCTCAAGCAGCATGTGCTGCCGCCGTCTCTGCAGCCCGACGCGCTGCGC
GCGTCGCACGACCTGCTGGCCAGGACCGTGGACGCCGTCAACACCGCTGA
CGTAACCACGCTGCACGCCGCGCGCGCGCAGCTTCACCCGCTGCACCACT
TCCTGGCGTACGTCTCCACGCTGCACGCCGCGCTGGCCGCCGTGGACGCC
AAGTCGCCCTCCGTGCCGCACCTGTTGACCGAGTTTGTGCAGCTGGTGCG
ATGCACGCCTGCGTCCAGCGCCTTGCATGCCGCGCACCGATGGATCGGCG
CCTGTCGCCATGCCGCGCGACTTGTCGTCGATACTAGGAATCTTCCTGGC
GCAATGGCGTTGA
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Coding sequence (CDS) from alignment at tig00000056_pilon:57658..58120+

>Ggra6662.t1 ID=Ggra6662.t1|Name=Ggra6662.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=378bp|location=Sequence derived from alignment at tig00000056_pilon:57658..58120+ (Gracilaria gracilis GNS1m male)
ATGGAGCCCGAGCCATCGGCGCCCGCGGCGCGCGTGGCGCACAATCACCC
CAACCAGAACCACCCGCAGCGCATCTCGTCGCTGCCCGACGCGCTGGTGG
CGCTCAAGCAGCATGTGCTGCCGCCGTCTCTGCAGCCCGACGCGCTGCGC
GCGTCGCACGACCTGCTGGCCAGGACCGTGGACGCCGTCAACACCGCTGA
CGTAACCACGCTGCACGCCGCGCGCGCGCAGCTTCACCCGCTGCACCACT
TCCTGGCCTGGTGCGATGCACGCCTGCGTCCAGCGCCTTGCATGCCGCGC
ACCGATGGATCGGCGCCTGTCGCCATGCCGCGCGACTTGTCGTCGATACT
AGGAATCTTCCTGGCGCAATGGCGTTGA
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