Ggra6788.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6788.t1
Unique Name	Ggra6788.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	600

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000056_pilon	contig	tig00000056_pilon:518986..521343 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6788	Ggra6788	Gracilaria gracilis GNS1m male	gene	tig00000056_pilon 518986..521343 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6788.t1	Ggra6788.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000056_pilon 518986..521343 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6788.t1.start1	Ggra6788.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000056_pilon 518986..518988 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6788.t1.CDS1	Ggra6788.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 518986..519527 +
Ggra6788.t1.CDS2	Ggra6788.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000056_pilon 520086..521343 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6788.t1.exon1	Ggra6788.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 518986..519527 +
Ggra6788.t1.exon2	Ggra6788.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000056_pilon 520086..521343 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6788.t1.intron1	Ggra6788.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000056_pilon 519528..520085 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6788.t1.stop1	Ggra6788.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000056_pilon 521341..521343 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000056_pilon:518986..521343+
coding sequence from alignment at tig00000056_pilon:518986..521343+

mRNA sequence

>Ggra6788.t1 ID=Ggra6788.t1|Name=Ggra6788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=600bp
MDARQGAASRPAPSPPAAPLASPFAPTSTPFIPPPALPTSTPSQHVSPTV
PDASRAALHAVPPPPPPPPQPEIVHACETLINVARSLNARPMYDIQRVGG
EDHQPLFHASVELYPQGYVARGVGRSKMACRRDAASNMLRQIYSKTVQQP
PAMPPVSAATASQPISQPMSQPQVNMLDPSTELEEEEERKQQQERNPAET
PAVDTAVPPASPPAPATSKPATPPTSNTAPPPVSTVPPVPRAEALLTQPQ
AKQPTVAVAATSTAVGTITAADPSASLGQAQQVGPASSDAPTTSVPPTSA
LPNAEKVQGNERAPSTARASGSTTQTIVKQEPAEPQAQSIANALATKRVP
DPVSQTPATLHSASSPKIGNSDGTSAVAPSGLSRVEPSAAQTTLKASSKS
ESGSTAPSTLKRKLEEDESVPRANGNGNFAVATQRQRKKARGLSTHPPVR
LDFHFLCVLDEQVRKSLEDLMKADLFIRPHIHLFSSNDVTTPMQLASGLS
VPVTPFDQNVSERQELVPMVLAFEAGSLCNDLWIERAKHLAKGLPGSLMP
RMIILSDNPLFEAFVKKGVIDVVNPKDDLAKFASEILQQSSCSEEKAME*

spliced messenger RNA

>Ggra6788.t1 ID=Ggra6788.t1|Name=Ggra6788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1800bp|location=Sequence derived from alignment at tig00000056_pilon:518986..521343+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCTCGACAGGGCGCCGCCTCACGACCCGCGCCATCGCCCCCTGC
CGCCCCGCTTGCGTCTCCGTTTGCGCCCACCTCCACGCCCTTCATCCCGC
CGCCTGCGCTGCCGACCTCCACGCCATCGCAGCATGTGTCCCCCACAGTG
CCGGATGcgtcgcgcgccgcgttgcacgccgtgccgccgccgcctccgcc
gccgccccagccCGAGATTGTCCACGCTTGTGAGACGCTTATCAACGTCG
CTCGCTCCTTGAATGCCAGGCCCATGTACGATATTCAGCGCGTCGGCGGC
GAGGATCATCAGCCCCTCTTTCATGCCTCCGTCGAGCTCTATCCGCAGGG
ATATGTCGCCCGCGGCGTGGGTCGCAGTAAGATGGCCTGTCGTCGAGATG
CCGCTTCCAATATGCTGCGCCAGATCTACTCCAAGACCGTGCAGCAGCCC
CCCGCTATGCCGCCTGTGTCGGCTGCCACCGCTTCGCAGCCGATTTCGCA
GCCGATGTCGCAGCCGCAGGTCAACATGTTAGATCCGTCCACagagctgg
aggaggaagagGAGCGGAAGCAGCAACAGGAGCGCAATCCTGCCGAGACC
CCCGCCGTAGATACCGCTGTACCACCTGCCTCACCGCCAGCGCCAGCCAC
TTCGAAACCTGCCACTCCACCGACGTCGAACACTGCACCTCCACCAGTTT
CGACCGTACCGCCCGTTCCAAGAGCTGAGGCACTTCTTACTCAACCGCAA
GCAAAACAGCCGACTGTTGCAGTTGCTGCCACCTCCACTGCTGTTGGGAC
TATCACTGCGGCCGATCCTTCCGCTTCTTTAGGTCAAGCTCAGCAAGTCG
GCCCCGCATCGAGCGATGCCCCAACAACTAGTGTTCCACCCACCAGCGCG
CTTCCTAATGCAGAAAAAGTGCAGGGCAATGAACGAGCTCCTAGCACTGC
CCGTGCGTCTGGTTCCACGACACAGACGATCGTTAAACAGGAACCTGCAG
AGCCTCAGGCACAATCTATTGCGAATGCCTTAGCAACAAAACGCGTACCG
GATCCTGTATCTCAAACCCCTGCAACGCTGCATTCTGCTTCGTCACCCAA
GATTGGCAATTCTGATGGCACCTCAGCTGTGGCCCCATCAGGACTAAGTC
GTGTTGAACCATCTGCTGCGCAGACGACGCTGAAAGCTTCATCCAAGTCG
GAGTCGGGCTCTACCGCTCCTTCTACGCTGAAACGTAAGCTTGAGGAAGA
CGAAAGTGTGCCGAGAGCAAATGGAAATGGAAACTTTGCCGTGGCGACGC
AACGTCAGCGAAAGAAAGCAAGAGGCCTTTCGACTCACCCTCCCGTTCGG
CTTGATTTTCATTTTCTTTGTGTGCTTGATGAGCAAGTAAGAAAATCACT
CGAAGATTTGATGAAGGCCGATCTCTTCATTCGCCCGCACATACATTTGT
TTAGCTCGAACGATGTCACGACACCCATGCAGCTTGCGTCTGGCTTGAGT
GTCCCAGTGACACCGTTTGATCAGAATGTAAGTGAACGGCAAGAGCTTGT
GCCTATGGTACTTGCTTTCGAAGCGGGAAGTCTTTGCAACGATTTATGGA
TTGAGCGTGCGAAGCACCTTGCCAAAGGACTACCGGGTAGTTTGATGCCG
AGAATGATCATACTATCCGATAATCCGCTTTTTGAAGCATTTGTCAAGAA
GGGTGTGATTGACGTTGTCAACCCAAAGGACGATTTAGCGAAGTTCGCAT
CGGAAATCCTTCAGCAAAGCTCATGTAGTGAGGAGAAGGCTATGGAATGA

protein sequence of Ggra6788.t1

>Ggra6788.t1 ID=Ggra6788.t1|Name=Ggra6788.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=600bp
MDARQGAASRPAPSPPAAPLASPFAPTSTPFIPPPALPTSTPSQHVSPTV
PDASRAALHAVPPPPPPPPQPEIVHACETLINVARSLNARPMYDIQRVGG
EDHQPLFHASVELYPQGYVARGVGRSKMACRRDAASNMLRQIYSKTVQQP
PAMPPVSAATASQPISQPMSQPQVNMLDPSTELEEEEERKQQQERNPAET
PAVDTAVPPASPPAPATSKPATPPTSNTAPPPVSTVPPVPRAEALLTQPQ
AKQPTVAVAATSTAVGTITAADPSASLGQAQQVGPASSDAPTTSVPPTSA
LPNAEKVQGNERAPSTARASGSTTQTIVKQEPAEPQAQSIANALATKRVP
DPVSQTPATLHSASSPKIGNSDGTSAVAPSGLSRVEPSAAQTTLKASSKS
ESGSTAPSTLKRKLEEDESVPRANGNGNFAVATQRQRKKARGLSTHPPVR
LDFHFLCVLDEQVRKSLEDLMKADLFIRPHIHLFSSNDVTTPMQLASGLS
VPVTPFDQNVSERQELVPMVLAFEAGSLCNDLWIERAKHLAKGLPGSLMP
RMIILSDNPLFEAFVKKGVIDVVNPKDDLAKFASEILQQSSCSEEKAME*

mRNA from alignment at tig00000056_pilon:518986..521343+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6788.t1 ID=Ggra6788.t1|Name=Ggra6788.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2358bp|location=Sequence derived from alignment at tig00000056_pilon:518986..521343+ (Gracilaria gracilis GNS1m male)
ATGGACGCTCGACAGGGCGCCGCCTCACGACCCGCGCCATCGCCCCCTGC
CGCCCCGCTTGCGTCTCCGTTTGCGCCCACCTCCACGCCCTTCATCCCGC
CGCCTGCGCTGCCGACCTCCACGCCATCGCAGCATGTGTCCCCCACAGTG
CCGGATGcgtcgcgcgccgcgttgcacgccgtgccgccgccgcctccgcc
gccgccccagccCGAGATTGTCCACGCTTGTGAGACGCTTATCAACGTCG
CTCGCTCCTTGAATGCCAGGCCCATGTACGATATTCAGCGCGTCGGCGGC
GAGGATCATCAGCCCCTCTTTCATGCCTCCGTCGAGCTCTATCCGCAGGG
ATATGTCGCCCGCGGCGTGGGTCGCAGTAAGATGGCCTGTCGTCGAGATG
CCGCTTCCAATATGCTGCGCCAGATCTACTCCAAGACCGTGCAGCAGCCC
CCCGCTATGCCGCCTGTGTCGGCTGCCACCGCTTCGCAGCCGATTTCGCA
GCCGATGTCGCAGCCGCAGGTCAACATGTTAGATCCGTCCACGTATCCGT
TGCAGTCGCATTCGTTTTCTTCCAACTACGCTTCTTACTCGCAGCCTGCG
TCCCATCCGGCCCATCCCTCCATGTCTCAGCCTTCCATGCCTCAGCAAGC
TCCTCCTCTAGGCagccagccttttcgcgccatcaaacaacagccacaac
taccttcgcctacgcaacagccaattgcgcaacatacgcagtatcatcaa
tctccgtcttcgtcgcttgccccgcagccttttcagccgcagcagcactc
gttttcaccacagtcgcagccgccgccgcaatcgcagcagccaccccaac
cacaatcgcagtcacatccgcaactgtccctacatctgcagccgcagccg
aagcaacagccgcagcttgtgcagcagtatcaagtacaacctcagcatag
ccttgcacaacagcaatcattgcagcagcaacaatcttcgtatatcccaa
tgcccgatagacagcaccagccaccgccaccactaccgccgccacaagaa
gaacctcccatgttctatgtcgacagaagtccggattcggatcttgaaag
agagctggaggaggaagagGAGCGGAAGCAGCAACAGGAGCGCAATCCTG
CCGAGACCCCCGCCGTAGATACCGCTGTACCACCTGCCTCACCGCCAGCG
CCAGCCACTTCGAAACCTGCCACTCCACCGACGTCGAACACTGCACCTCC
ACCAGTTTCGACCGTACCGCCCGTTCCAAGAGCTGAGGCACTTCTTACTC
AACCGCAAGCAAAACAGCCGACTGTTGCAGTTGCTGCCACCTCCACTGCT
GTTGGGACTATCACTGCGGCCGATCCTTCCGCTTCTTTAGGTCAAGCTCA
GCAAGTCGGCCCCGCATCGAGCGATGCCCCAACAACTAGTGTTCCACCCA
CCAGCGCGCTTCCTAATGCAGAAAAAGTGCAGGGCAATGAACGAGCTCCT
AGCACTGCCCGTGCGTCTGGTTCCACGACACAGACGATCGTTAAACAGGA
ACCTGCAGAGCCTCAGGCACAATCTATTGCGAATGCCTTAGCAACAAAAC
GCGTACCGGATCCTGTATCTCAAACCCCTGCAACGCTGCATTCTGCTTCG
TCACCCAAGATTGGCAATTCTGATGGCACCTCAGCTGTGGCCCCATCAGG
ACTAAGTCGTGTTGAACCATCTGCTGCGCAGACGACGCTGAAAGCTTCAT
CCAAGTCGGAGTCGGGCTCTACCGCTCCTTCTACGCTGAAACGTAAGCTT
GAGGAAGACGAAAGTGTGCCGAGAGCAAATGGAAATGGAAACTTTGCCGT
GGCGACGCAACGTCAGCGAAAGAAAGCAAGAGGCCTTTCGACTCACCCTC
CCGTTCGGCTTGATTTTCATTTTCTTTGTGTGCTTGATGAGCAAGTAAGA
AAATCACTCGAAGATTTGATGAAGGCCGATCTCTTCATTCGCCCGCACAT
ACATTTGTTTAGCTCGAACGATGTCACGACACCCATGCAGCTTGCGTCTG
GCTTGAGTGTCCCAGTGACACCGTTTGATCAGAATGTAAGTGAACGGCAA
GAGCTTGTGCCTATGGTACTTGCTTTCGAAGCGGGAAGTCTTTGCAACGA
TTTATGGATTGAGCGTGCGAAGCACCTTGCCAAAGGACTACCGGGTAGTT
TGATGCCGAGAATGATCATACTATCCGATAATCCGCTTTTTGAAGCATTT
GTCAAGAAGGGTGTGATTGACGTTGTCAACCCAAAGGACGATTTAGCGAA
GTTCGCATCGGAAATCCTTCAGCAAAGCTCATGTAGTGAGGAGAAGGCTA
TGGAATGA

Coding sequence (CDS) from alignment at tig00000056_pilon:518986..521343+

>Ggra6788.t1 ID=Ggra6788.t1|Name=Ggra6788.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1800bp|location=Sequence derived from alignment at tig00000056_pilon:518986..521343+ (Gracilaria gracilis GNS1m male)
ATGGACGCTCGACAGGGCGCCGCCTCACGACCCGCGCCATCGCCCCCTGC
CGCCCCGCTTGCGTCTCCGTTTGCGCCCACCTCCACGCCCTTCATCCCGC
CGCCTGCGCTGCCGACCTCCACGCCATCGCAGCATGTGTCCCCCACAGTG
CCGGATGcgtcgcgcgccgcgttgcacgccgtgccgccgccgcctccgcc
gccgccccagccCGAGATTGTCCACGCTTGTGAGACGCTTATCAACGTCG
CTCGCTCCTTGAATGCCAGGCCCATGTACGATATTCAGCGCGTCGGCGGC
GAGGATCATCAGCCCCTCTTTCATGCCTCCGTCGAGCTCTATCCGCAGGG
ATATGTCGCCCGCGGCGTGGGTCGCAGTAAGATGGCCTGTCGTCGAGATG
CCGCTTCCAATATGCTGCGCCAGATCTACTCCAAGACCGTGCAGCAGCCC
CCCGCTATGCCGCCTGTGTCGGCTGCCACCGCTTCGCAGCCGATTTCGCA
GCCGATGTCGCAGCCGCAGGTCAACATGTTAGATCCGTCCACagagctgg
aggaggaagagGAGCGGAAGCAGCAACAGGAGCGCAATCCTGCCGAGACC
CCCGCCGTAGATACCGCTGTACCACCTGCCTCACCGCCAGCGCCAGCCAC
TTCGAAACCTGCCACTCCACCGACGTCGAACACTGCACCTCCACCAGTTT
CGACCGTACCGCCCGTTCCAAGAGCTGAGGCACTTCTTACTCAACCGCAA
GCAAAACAGCCGACTGTTGCAGTTGCTGCCACCTCCACTGCTGTTGGGAC
TATCACTGCGGCCGATCCTTCCGCTTCTTTAGGTCAAGCTCAGCAAGTCG
GCCCCGCATCGAGCGATGCCCCAACAACTAGTGTTCCACCCACCAGCGCG
CTTCCTAATGCAGAAAAAGTGCAGGGCAATGAACGAGCTCCTAGCACTGC
CCGTGCGTCTGGTTCCACGACACAGACGATCGTTAAACAGGAACCTGCAG
AGCCTCAGGCACAATCTATTGCGAATGCCTTAGCAACAAAACGCGTACCG
GATCCTGTATCTCAAACCCCTGCAACGCTGCATTCTGCTTCGTCACCCAA
GATTGGCAATTCTGATGGCACCTCAGCTGTGGCCCCATCAGGACTAAGTC
GTGTTGAACCATCTGCTGCGCAGACGACGCTGAAAGCTTCATCCAAGTCG
GAGTCGGGCTCTACCGCTCCTTCTACGCTGAAACGTAAGCTTGAGGAAGA
CGAAAGTGTGCCGAGAGCAAATGGAAATGGAAACTTTGCCGTGGCGACGC
AACGTCAGCGAAAGAAAGCAAGAGGCCTTTCGACTCACCCTCCCGTTCGG
CTTGATTTTCATTTTCTTTGTGTGCTTGATGAGCAAGTAAGAAAATCACT
CGAAGATTTGATGAAGGCCGATCTCTTCATTCGCCCGCACATACATTTGT
TTAGCTCGAACGATGTCACGACACCCATGCAGCTTGCGTCTGGCTTGAGT
GTCCCAGTGACACCGTTTGATCAGAATGTAAGTGAACGGCAAGAGCTTGT
GCCTATGGTACTTGCTTTCGAAGCGGGAAGTCTTTGCAACGATTTATGGA
TTGAGCGTGCGAAGCACCTTGCCAAAGGACTACCGGGTAGTTTGATGCCG
AGAATGATCATACTATCCGATAATCCGCTTTTTGAAGCATTTGTCAAGAA
GGGTGTGATTGACGTTGTCAACCCAAAGGACGATTTAGCGAAGTTCGCAT
CGGAAATCCTTCAGCAAAGCTCATGTAGTGAGGAGAAGGCTATGGAATGA