Ggra6788.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6788.t1
Unique NameGgra6788.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length600
Homology
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BLAST of Ggra6788.t1 vs. uniprot
Match: A0A2V3IPS6 (DRBM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPS6_9FLOR)

HSP 1 Score: 180 bits (457), Expect = 5.730e-45
Identity = 200/691 (28.94%), Postives = 280/691 (40.52%), Query Frame = 0 
Query:   54 SRAALHAVPPXXXXXXQPEIVHACETLINVARSLNARPMYDIQRVGGEDHQPLFHASVELYPQGYVARGVGRSKMACRRDAASNMLRQIYSKTV----------------------------QQP----------------------PAMXXXXXXXXXXXXXXXXXXXXVNMLDPSTELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA----------------------------------------PATSKPXXXXXXXXXXXXXXXXXX---------------VPRAEALLTQPQAKQPTVAVAATSTAVGTITAADPSASLGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSTARASGSTTQTIVKQEPAEPQAQSIANALATKRVPDPV---------------SQTPATLHSASSPKIG-------------------NSDGTSAVAPSGLSRVEPSAAQTTLKASSKSES------GSTAPS---TLKRKLEEDESVPRANGNGNFAVATQRQRKKARGLSTHPPVRLDFHFLCVLDEQVRKSLEDLMKADLFIRPHIHLFSSNDVTTPMQLASGLSVPVTPFDQNVSERQELVPMVLAFEAGSLCNDLWIERAKHLAKGLPGSLMPRMIILSDNPLFEAFVKKGVIDVVNPKDDLAKFASEILQQSSCSEEK 596
            S+A +  +PP        +IV+AC+TL+ VARSLN+RP+YD +RVGGEDHQPLFHAS++L PQGY  RGVG SK++ RRDAA NMLR IYSKTV                             QP                      P+                     +    P+ + E            XXXXXXXXXXXXXXXXX                                         P   +P                                   + + L  + QA QP    A+   AV  + A++  +S  Q                                 + S   +S + T +     P +P     A  ++   V DP                S  PA+     SP  G                    SD   +V P       P  +    ++S   E       G+T P+   +LKRKL    +   ANG+ N   A ++ RKKA+ L ++P VR++FHFLC+  + + + L++L+ ADLF+RP I +F++  V   +Q +  L+V V  F  N+      V + LAFEAG + N++WI RAKHL +GL     P++IIL+++  F+ F K GV DVV P DD+A   S ILQ+ + SE K
Sbjct:   61 SQAPIPQLPPQ-------DIVNACDTLVTVARSLNSRPVYDTRRVGGEDHQPLFHASLKLIPQGYSTRGVGHSKLSSRRDAACNMLRIIYSKTVPPHASPAAGAANMPRTSSPSHSLAGQPQMQPASYPVTQTRQVFPIRPYSSLPHPSQGRMPHSGVPQPSPVHQGPGHIQPFHPTGKQEQLQPQPPMQQHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHETQYQPQQPELGAQEQQNVQPVQEQPEGQQVKQKEEEQEPMFYVDRSPDSELERELEXXXXQQKQLSAEQQALQPPAPDASAEEAVKPV-ASNSESSTAQPSAPQASVPRPVNESGPPMLRSKPIPVSTSGATSASLPSSSVNATPS----SPLKPMFSVAATPISAHPVRDPRVAVAVPSASAAVSVGSGNPASALQNQSPTNGASAAAEIATNVSVALTPVRESDPPESVGPPSTKPSNPPLSSVKAESSLLPEQTVSLSDGNTIPAAAPSLKRKLNHAVTDRNANGSTNGTAAVEQARKKAKPLLSNPSVRIEFHFLCIYSDVIMRCLQNLIGADLFMRPVIRMFTAAKVPIRVQFSPNLNVEVKQFSCNIQNDISRVSVALAFEAGIISNEMWIARAKHLEEGLSSMYWPQLIILNNDLCFDIFKKNGVTDVVKPSDDVAAHVSRILQRIANSEVK 739
The following BLAST results are available for this feature:
BLAST of Ggra6788.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IPS65.730e-4528.94DRBM domain-containing protein n=1 Tax=Gracilariop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014720Double-stranded RNA-binding domainSMARTSM00358DRBM_3coord: 76..143
e-value: 6.2E-6
score: 35.7
IPR014720Double-stranded RNA-binding domainPROSITEPS50137DS_RBDcoord: 75..144
score: 12.645117
NoneNo IPR availableGENE3D3.30.160.20coord: 75..148
e-value: 7.9E-9
score: 37.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 385..409
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 352..378
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 206..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 12..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..443
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..250
NoneNo IPR availableCDDcd00048DSRM_SFcoord: 90..139
e-value: 9.56099E-7
score: 44.198
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 76..159

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000056_piloncontigtig00000056_pilon:518986..521343 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6788.t1Ggra6788.t1Gracilaria gracilis GNS1m malemRNAtig00000056_pilon 518986..521343 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6788.t1 ID=Ggra6788.t1|Name=Ggra6788.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=600bp
MDARQGAASRPAPSPPAAPLASPFAPTSTPFIPPPALPTSTPSQHVSPTV
PDASRAALHAVPPPPPPPPQPEIVHACETLINVARSLNARPMYDIQRVGG
EDHQPLFHASVELYPQGYVARGVGRSKMACRRDAASNMLRQIYSKTVQQP
PAMPPVSAATASQPISQPMSQPQVNMLDPSTELEEEEERKQQQERNPAET
PAVDTAVPPASPPAPATSKPATPPTSNTAPPPVSTVPPVPRAEALLTQPQ
AKQPTVAVAATSTAVGTITAADPSASLGQAQQVGPASSDAPTTSVPPTSA
LPNAEKVQGNERAPSTARASGSTTQTIVKQEPAEPQAQSIANALATKRVP
DPVSQTPATLHSASSPKIGNSDGTSAVAPSGLSRVEPSAAQTTLKASSKS
ESGSTAPSTLKRKLEEDESVPRANGNGNFAVATQRQRKKARGLSTHPPVR
LDFHFLCVLDEQVRKSLEDLMKADLFIRPHIHLFSSNDVTTPMQLASGLS
VPVTPFDQNVSERQELVPMVLAFEAGSLCNDLWIERAKHLAKGLPGSLMP
RMIILSDNPLFEAFVKKGVIDVVNPKDDLAKFASEILQQSSCSEEKAME*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014720dsRBD_dom