Ggra1779.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra1779.t1
Unique NameGgra1779.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length191
Homology
BLAST of Ggra1779.t1 vs. uniprot
Match: A0A2V3IJ27 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ27_9FLOR)

HSP 1 Score: 261 bits (667), Expect = 1.940e-86
Identity = 134/192 (69.79%), Postives = 154/192 (80.21%), Query Frame = 0
Query:    1 MWRNRLTKAWDWLKSRRLVGEDEHHLFYSEFIEKGKPERRYVEYKDRNILSSSDRMPVEWWAWLHNRRDTVPSIGEIQESELRRQALAQRVAVIEAEDEKQRLRQFSGASRNQSGSEAEASRRKKVIMRLSKAASPPSATDNDPGIIPISEDEYRIERRGE---RNIAEEPQGAGEDFQPGSWTPTPSRRKA 189
            MWR RL+K WDWLKSR+LVGED+HHL+YSEFIEK KP+RRYVEYKD+NIL SSDRMP+EWWAWLHNRRDT+P+  EI+E+EL+RQ+LA RVA +EAEDEKQRLRQFSGA ++   SEAEA RRKK +MRL+KAASP   +D D   I IS         GE   RN  EEPQGAGEDFQPGSW P PSRR+A
Sbjct:    1 MWRTRLSKVWDWLKSRKLVGEDDHHLYYSEFIEKNKPDRRYVEYKDKNILHSSDRMPIEWWAWLHNRRDTIPADSEIKEAELKRQSLAMRVAALEAEDEKQRLRQFSGAPKSPLRSEAEARRRKKAMMRLAKAASP---SDTDESGIEISAQVSIRAGLGETKMRNTEEEPQGAGEDFQPGSWKPMPSRRRA 189          
BLAST of Ggra1779.t1 vs. uniprot
Match: R7Q5E2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q5E2_CHOCR)

HSP 1 Score: 210 bits (534), Expect = 3.360e-66
Identity = 108/194 (55.67%), Postives = 136/194 (70.10%), Query Frame = 0
Query:    1 MWRNRLTKAWDWLKSRRLVGEDEHHLFYSEFIEKGKPERRYVEYKDRNILSSSDRMPVEWWAWLHNRRDTVPSIGEIQESELRRQALAQRVAVIEAEDEKQRLRQFSGASRNQSGSE-AEASRRKKVIMRLSKAASPPSATDNDPGIIPISEDEYRIERRGE---RNIAEEPQGAGEDFQPGSWTPTPSRRKAT 190
            MWR RL++ WDWL+SR+LVGEDEHH FY+EFI   KPERRYVEYKD+NI  SSDRM +EWW+WLHNRRD  P+  E+  SE  +Q LAQ+VA++EAEDEKQRLRQF+G    Q+  E A A RRK+ +MRL+ AASP  A         +S+    ++  GE    N  E P G+GEDFQPGSW P  ++R+ +
Sbjct:    1 MWRTRLSRTWDWLRSRKLVGEDEHHFFYTEFIASDKPERRYVEYKDQNITHSSDRMAIEWWSWLHNRRDETPTCEELAMSEANQQRLAQKVAILEAEDEKQRLRQFAGGQPLQAAEEEARARRRKEAMMRLTNAASPSDAAVASG----MSQGGAAVKASGEGGAMNPEENPTGSGEDFQPGSWQPAATKRRGS 190          
BLAST of Ggra1779.t1 vs. uniprot
Match: M2XJC1 (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XJC1_GALSU)

HSP 1 Score: 96.3 bits (238), Expect = 1.750e-21
Identity = 67/186 (36.02%), Postives = 102/186 (54.84%), Query Frame = 0
Query:   11 DWLKSRRLVGEDEH-HLFYSEFIEKGKPERRYVEYKDRNILSSSDRMPVEWWAWLHNRRDTVPSIGEIQESELRRQALAQRVAVIEAEDEKQRLRQF-SGASRNQS-GSEAEASRRKKVIMR-LSKAASPPSATDNDPGIIPISEDEYRIERRGERNIA---------EEPQGAGEDFQPGSWTPT 183
            DW  SR  +G D+  ++++ E  + G   +R+V+Y +++I      +PVEWW+WLH  R+  PS  EI   E  R  +A++VA IEAED KQRL+QF SG S  +S G E + + R     R L++      +  ND       E++  +E+   +N +         EEP+G GE FQPG+W P+
Sbjct:   10 DWCLSREAIGTDKQGNVYFEETRQTGSVRKRFVKYTNQSIPDVHS-VPVEWWSWLHYMREDPPSEQEISSHEAHRAKVAEKVAKIEAEDRKQRLKQFVSGTSSGESNGEEVQQALRYLAQQRGLNETLVDNLSKQND------KENKDLLEKSSLQNSSREELSETAPEEPKGYGEGFQPGTWKPS 188          
The following BLAST results are available for this feature:
BLAST of Ggra1779.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IJ271.940e-8669.79Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q5E23.360e-6655.67Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
M2XJC11.750e-2136.02NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 77..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..168
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 176..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 104..190
NoneNo IPR availablePANTHERPTHR32470ADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 2coord: 8..186
IPR007763NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12PFAMPF05071NDUFA12coord: 17..79
e-value: 1.0E-7
score: 32.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:602423..603121 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1779.t1Ggra1779.t1Gracilaria gracilis GNS1m malemRNAtig00000050_pilon 602423..603121 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra1779.t1 ID=Ggra1779.t1|Name=Ggra1779.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=191bp
MWRNRLTKAWDWLKSRRLVGEDEHHLFYSEFIEKGKPERRYVEYKDRNIL
SSSDRMPVEWWAWLHNRRDTVPSIGEIQESELRRQALAQRVAVIEAEDEK
QRLRQFSGASRNQSGSEAEASRRKKVIMRLSKAASPPSATDNDPGIIPIS
EDEYRIERRGERNIAEEPQGAGEDFQPGSWTPTPSRRKAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007763NDUFA12