Ggra1779.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1779.t1
Unique NameGgra1779.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length191
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:602423..603121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706732.1
PFAMsNDUFA12
Max annot lvl2759|Eukaryota
KEGG koko:K18160
KEGG Pathwayko04714,map04714
Evalue1.66e-21
EggNOG OGs2CZ54@1|root,2SBMA@2759|Eukaryota
DescriptionAccessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone
COG categoryU
BRITEko00000,ko00001,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1779Ggra1779Gracilaria gracilis GNS1m malegenetig00000050_pilon 602423..603121 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1779.t1Ggra1779.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 602423..603121 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1779.t1.stop1Ggra1779.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 602423..602425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1779.t1.CDS1Ggra1779.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 602423..602488 -
Ggra1779.t1.CDS2Ggra1779.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000050_pilon 602615..603121 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1779.t1.exon1Ggra1779.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 602423..602488 -
Ggra1779.t1.exon2Ggra1779.t1.exon2Gracilaria gracilis GNS1m maleexontig00000050_pilon 602615..603121 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1779.t1.intron1Ggra1779.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000050_pilon 602489..602614 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1779.t1.start1Ggra1779.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 603119..603121 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1779.t1 ID=Ggra1779.t1|Name=Ggra1779.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=191bp
MWRNRLTKAWDWLKSRRLVGEDEHHLFYSEFIEKGKPERRYVEYKDRNIL
SSSDRMPVEWWAWLHNRRDTVPSIGEIQESELRRQALAQRVAVIEAEDEK
QRLRQFSGASRNQSGSEAEASRRKKVIMRLSKAASPPSATDNDPGIIPIS
EDEYRIERRGERNIAEEPQGAGEDFQPGSWTPTPSRRKAT*
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spliced messenger RNA

>Ggra1779.t1 ID=Ggra1779.t1|Name=Ggra1779.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=573bp|location=Sequence derived from alignment at tig00000050_pilon:602423..603121- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGAGGAATCGTTTGACAAAGGCATGGGACTGGTTGAAGTCGAGAAG
GTTGGTTGGGGAGGATGAGCATCATCTCTTCTATTCGGAATTTATTGAAA
AAGGAAAGCCTGAACGTCGATACGTCGAGTACAAGGATAGAAATATCCTA
AGCTCTTCAGATCGAATGCCCGTAGAATGGTGGGCATGGCTGCATAATAG
ACGTGATACAGTTCCCTCGATTGGAGAAATTCAAGAATCAGAGCTACGTA
GACAGGCTCTCGCCCAGCGCGTGGCTGTAATCGAGGCGGAGGACGAAAAG
CAACGCCTTCGCCAATTCTCCGGAGCTTCCAGAAACCAGTCAGGATCAGA
AGCCGAAGCAAGTAGACGAAAGAAGGTCATTATGCGACTTTCGAAAGCTG
CGTCCCCTCCTTCTGCCACTGACAACGATCCTGGTATTATCCCGATTTCA
GAAGATGAATATCGGATTGAACGCCGCGGTGAAAGAAACATTGCGGAAGA
GCCACAGGGAGCCGGAGAAGATTTTCAACCTGGTTCTTGGACTCCCACTC
CCTCACGTAGGAAAGCAACCTAG
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protein sequence of Ggra1779.t1

>Ggra1779.t1 ID=Ggra1779.t1|Name=Ggra1779.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=191bp
MWRNRLTKAWDWLKSRRLVGEDEHHLFYSEFIEKGKPERRYVEYKDRNIL
SSSDRMPVEWWAWLHNRRDTVPSIGEIQESELRRQALAQRVAVIEAEDEK
QRLRQFSGASRNQSGSEAEASRRKKVIMRLSKAASPPSATDNDPGIIPIS
EDEYRIERRGERNIAEEPQGAGEDFQPGSWTPTPSRRKAT*
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mRNA from alignment at tig00000050_pilon:602423..603121-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1779.t1 ID=Ggra1779.t1|Name=Ggra1779.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000050_pilon:602423..603121- (Gracilaria gracilis GNS1m male)
ATGTGGAGGAATCGTTTGACAAAGGCATGGGACTGGTTGAAGTCGAGAAG
GTTGGTTGGGGAGGATGAGCATCATCTCTTCTATTCGGAATTTATTGAAA
AAGGAAAGCCTGAACGTCGATACGTCGAGTACAAGGATAGAAATATCCTA
AGCTCTTCAGATCGAATGCCCGTAGAATGGTGGGCATGGCTGCATAATAG
ACGTGATACAGTTCCCTCGATTGGAGAAATTCAAGAATCAGAGCTACGTA
GACAGGCTCTCGCCCAGCGCGTGGCTGTAATCGAGGCGGAGGACGAAAAG
CAACGCCTTCGCCAATTCTCCGGAGCTTCCAGAAACCAGTCAGGATCAGA
AGCCGAAGCAAGTAGACGAAAGAAGGTCATTATGCGACTTTCGAAAGCTG
CGTCCCCTCCTTCTGCCACTGACAACGATCCTGGTATTATCCCGATTTCA
GAAGATGAATATCGGATTGAACGCCGCGGTGAAAGAAACATTGCGGAAGA
GCCACAGGTACGTCTACAACCGCTCAAGTACAGGGTGGCTGTCGTTACGA
CTTCGCTTCAGGCTGCTAAGGATTTCACACTTTTGCTAATGTTCAGAGTT
TTCATATCTGCTTTCTTTCATGCATTGCTATAGGGAGCCGGAGAAGATTT
TCAACCTGGTTCTTGGACTCCCACTCCCTCACGTAGGAAAGCAACCTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:602423..603121-

>Ggra1779.t1 ID=Ggra1779.t1|Name=Ggra1779.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=573bp|location=Sequence derived from alignment at tig00000050_pilon:602423..603121- (Gracilaria gracilis GNS1m male)
ATGTGGAGGAATCGTTTGACAAAGGCATGGGACTGGTTGAAGTCGAGAAG
GTTGGTTGGGGAGGATGAGCATCATCTCTTCTATTCGGAATTTATTGAAA
AAGGAAAGCCTGAACGTCGATACGTCGAGTACAAGGATAGAAATATCCTA
AGCTCTTCAGATCGAATGCCCGTAGAATGGTGGGCATGGCTGCATAATAG
ACGTGATACAGTTCCCTCGATTGGAGAAATTCAAGAATCAGAGCTACGTA
GACAGGCTCTCGCCCAGCGCGTGGCTGTAATCGAGGCGGAGGACGAAAAG
CAACGCCTTCGCCAATTCTCCGGAGCTTCCAGAAACCAGTCAGGATCAGA
AGCCGAAGCAAGTAGACGAAAGAAGGTCATTATGCGACTTTCGAAAGCTG
CGTCCCCTCCTTCTGCCACTGACAACGATCCTGGTATTATCCCGATTTCA
GAAGATGAATATCGGATTGAACGCCGCGGTGAAAGAAACATTGCGGAAGA
GCCACAGGGAGCCGGAGAAGATTTTCAACCTGGTTCTTGGACTCCCACTC
CCTCACGTAGGAAAGCAACCTAG
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