Ggra1855.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1855.t1
Unique NameGgra1855.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length835
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000050_piloncontigtig00000050_pilon:953433..955937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1855Ggra1855Gracilaria gracilis GNS1m malegenetig00000050_pilon 953433..955937 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1855.t1.stop1Ggra1855.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000050_pilon 953433..953435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1855.t1.CDS1Ggra1855.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000050_pilon 953433..955937 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1855.t1.exon1Ggra1855.t1.exon1Gracilaria gracilis GNS1m maleexontig00000050_pilon 953433..955937 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1855.t1.start1Ggra1855.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000050_pilon 955935..955937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1855.t1Ggra1855.t1Gracilaria gracilis GNS1m malepolypeptidetig00000050_pilon 953433..955937 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1855.t1 ID=Ggra1855.t1|Name=Ggra1855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=835bp
MQATANSVTDVILRQHPCSPPVPLSLDPLTTGLHCIHAPLNSPPLSFSNL
LSLFEYLRHLSARPAIEREKTIFRIARRSARVLGSIFDIPTVCGWAVFQK
IAHVDTRLAALIGSTYVYASLPSALVPFDDVRPSKECHPEVAPYTQLASV
LHEALDCLLLSSGQKHDLHLRNIYPHSVWSYGTLFSEGQVRRLAPIAPPP
RIFSRYVECPVVGEMLGVPGEVCRHGWITFFHALVPTCVSGGLDFSCPAP
LARFMPRSFPRQKAVPASLLLEDLTAPELYYLIRIEQVATGGDVTAVYHE
ALQFTDKSQGLHQEFHDRVLHCEALAVKVKREQAEDTFDVDHLRKRSAEN
NKVLAYAEQAMCEASSSDEEFEGYTDKGDFAFVYKRDARQPFAELDGYDG
WCDEVLTEKKHKAWAVYHPEILMPSEVAALYLDIGVRLYCDSGRSVIIRE
DAEAADAAMDGIDDTVIADDVLWTELKPLLDGFHAGVKNAADRFVVALLV
SGQVRLYGLYGCVDPSEARHIGRSIGIFMDAPLQVLAFKLKERQLSARND
DRDCLLIPVGPACTIVMRFVTEKYSGKYGRVHHSESVVVMPVGCRLGDRR
QLKWYAVGAGLFEANGAAPVSLVEMSAHQLDVLSCSATAESDHVVVSAKK
GAASVRLRDIGFEAGWTGWSPHLVISGKGKRIVTSVRAHSLTHLVDVLRR
MRDGGKEVNLVYSIQEVAAAVVLREVLIGALRVTRVGAGLRWVPTWKMAE
QGFVVAHEMELARGVGCRVGGEGEIGILVTNDTMALFAVRGERGGCWDLL
FVRLDANIESEKLLVAPQFEGFCWRVCGGKMGAR*
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spliced messenger RNA

>Ggra1855.t1 ID=Ggra1855.t1|Name=Ggra1855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2505bp|location=Sequence derived from alignment at tig00000050_pilon:953433..955937- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGGCAACTGCCAATTCAGTGACTGATGTCATCCTTCGACAACACCC
GTGCTCTCCGCCTGTACCGTTGTCTCTTGATCCCCTCACAACCGGTTTGC
ACTGCATACACGCTCCTTTAAACTCTCCTCCGCTCTCATTCTCCAACCTT
CTCTCATTGTTTGAATACCTGCGTCATTTATCAGCTCGCCCTGCCATAGA
ACGGGAGAAAACCATTTTCCGTATTGCTCGCCGCAGTGCACGCGTGCTTG
GGTCCATCTTTGATATTCCCACTGTTTGTGGATGGGCCGTCTTTCAGAAG
ATCGCTCATGTTGACACTCGACTTGCGGCTTTAATAGGCTCCACCTATGT
CTATGCCAGTTTGCCATCCGCGCTCGTGCCGTTTGATGACGTGCGTCCTT
CTAAAGAATGCCATCCAGAAGTAGCCCCCTACACTCAACTCGCCAGTGTG
TTACATGAAGCGCTTGACTGTTTATTGCTATCTTCCGGTCAGAAGCACGA
CCTCCATCTGCGCAATATATACCCTCATTCAGTTTGGTCGTACGGAACAC
TCTTTTCAGAAGGACAAGTGCGACGCCTCGCTCCAATCGCTCCACCGCCG
CGAATTTTCTCCCGATACGTCGAGTGTCCAGTCGTTGGGGAGATGCTGGG
TGTACCCGGGGAAGTCTGTCGCCATGGCTGGATCACTTTCTTTCACGCGC
TCGTTCCAACATGTGTGAGCGGCGGATTGGATTTCTCATGTCCAGCGCCA
TTGGCGCGATTCATGCCGCGCTCTTTTCCCCGTCAAAAGGCTGTTCCTGC
CTCGCTTTTGCTTGAAGATCTCACGGCGCCAGAACTATATTATCTGATTA
GAATTGAACAAGTTGCTACTGGTGGAGATGTAACTGCTGTTTATCACGAG
GCGCTACAGTTTACCGACAAATCGCAAGGACTGCATCAGGAGTTTCATGA
TAGGGTTCTTCACTGCGAAGCACTCGCAGTTAAAGTGAAGAGGGAGCAAG
CAGAAGACACATTCGATGTTGATCATCTTCGCAAACGATCGGCAGAAAAC
AACAAGGTTCTCGCTTACGCAGAGCAGGCCATGTGTGAAGCGTCTTCAAG
CGATGAAGAATTCGAAGGCTACACAGATAAGGGCGACTTTGCTTTTGTGT
ATAAACGAGACGCCCGTCAGCCATTTGCTGAACTTGATGGCTATGACGGC
TGGTGCGACGAGGTTCTTACGGAGAAGAAGCACAAGGCTTGGGCTGTGTA
TCATCCCGAGATATTGATGCCATCTGAAGTGGCGGCACTTTACCTTGACA
TTGGGGTCCGTCTGTATTGCGATTCCGGACGAAGCGTGATCATACGGGAA
GATGCAGAAGCTGCAGACGCTGCAATGGATGGCATTGACGACACGGTGAT
TGCTGACGACGTGCTATGGACGGAGCTTAAGCCGTTACTGGACGGCTTTC
ACGCAGGAGTGAAGAATGCTGCGGATCGATTTGTGGTGGCACTACTTGTA
TCAGGGCAGGTTCGTCTCTATGGGTTGTACGGGTGTGTGGACCCATCTGA
AGCGCGTCATATTGGGAGGAGCATAGGGATCTTCATGGACGCACCATTGC
AGGTGTTAGCTTTCAAGCTGAAAGAGCGGCAGTTGTCCGCTCGAAACGAC
GATCGCGATTGTCTGTTGATCCCTGTTGGACCCGCGTGCACGATTGTGAT
GCGCTTCGTGACGGAGAAGTACTCGGGCAAGTACGGCAGGGTGCACCACT
CGGAGTCGGTGGTGGTGATGCCAGTGGGATGCAGACTGGGCGACCGCAGG
CAGCTGAAATGGTACGCGGTGGGCGCAGGACTGTTCGAAGCGAATGGTGC
GGCGCCGGTGTCTCTGGTGGAGATGAGCGCGCATCAGCTGGACGTGCTGT
CGTGCTCGGCGACGGCGGAGAGCGACCACGTGGTGGTTTCCGCGAAGAAG
GGGGCGGCGTCGGTGCGGCTACGCGACATTGGGTTCGAGGCCGGGTGGAC
GGGGTGGTCGCCGCATCTGGTGATCTCTGGAAAGGGAAAGCGCATCGTGA
CGTCGGTGCGCGCCCACAGCCTGACGCACCTGGTGGACGTGCTGCGGAGA
ATGAGGGACGGCGGCAAGGAGGTGAATTTGGTGTATAGCATTCAGGAAGT
GGCTGCGGCGGTGGTGCTTAGGGAGGTGCTGATTGGAGCGCTGCGCGTGA
CGAGGGTGGGCGCGGGGCTGCGGTGGGTGCCGACGTGGAAGATGGCGGAG
CAGGGCTTTGTGGTGGCGCATGAGATGGAGCTGGCACGCGGAGTGGGCTG
TCGCGTGGGCGGTGAGGGCGAGATTGGAATTTTGGTGACGAACGACACGA
TGGCGCTGTTTGCAGTGCGTGGGGAGAGGGGGGGCTGCTGGGATTTGTTG
TTTGTGCGATTGGATGCGAACATCGAGTCGGAGAAACTGCTGGTGGCTCC
GCAGTTTGAAGGCTTTTGCTGGCGCGTTTGCGGCGGGAAGATGGGCGCCC
GGTAG
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protein sequence of Ggra1855.t1

>Ggra1855.t1 ID=Ggra1855.t1|Name=Ggra1855.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=835bp
MQATANSVTDVILRQHPCSPPVPLSLDPLTTGLHCIHAPLNSPPLSFSNL
LSLFEYLRHLSARPAIEREKTIFRIARRSARVLGSIFDIPTVCGWAVFQK
IAHVDTRLAALIGSTYVYASLPSALVPFDDVRPSKECHPEVAPYTQLASV
LHEALDCLLLSSGQKHDLHLRNIYPHSVWSYGTLFSEGQVRRLAPIAPPP
RIFSRYVECPVVGEMLGVPGEVCRHGWITFFHALVPTCVSGGLDFSCPAP
LARFMPRSFPRQKAVPASLLLEDLTAPELYYLIRIEQVATGGDVTAVYHE
ALQFTDKSQGLHQEFHDRVLHCEALAVKVKREQAEDTFDVDHLRKRSAEN
NKVLAYAEQAMCEASSSDEEFEGYTDKGDFAFVYKRDARQPFAELDGYDG
WCDEVLTEKKHKAWAVYHPEILMPSEVAALYLDIGVRLYCDSGRSVIIRE
DAEAADAAMDGIDDTVIADDVLWTELKPLLDGFHAGVKNAADRFVVALLV
SGQVRLYGLYGCVDPSEARHIGRSIGIFMDAPLQVLAFKLKERQLSARND
DRDCLLIPVGPACTIVMRFVTEKYSGKYGRVHHSESVVVMPVGCRLGDRR
QLKWYAVGAGLFEANGAAPVSLVEMSAHQLDVLSCSATAESDHVVVSAKK
GAASVRLRDIGFEAGWTGWSPHLVISGKGKRIVTSVRAHSLTHLVDVLRR
MRDGGKEVNLVYSIQEVAAAVVLREVLIGALRVTRVGAGLRWVPTWKMAE
QGFVVAHEMELARGVGCRVGGEGEIGILVTNDTMALFAVRGERGGCWDLL
FVRLDANIESEKLLVAPQFEGFCWRVCGGKMGAR*
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mRNA from alignment at tig00000050_pilon:953433..955937-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1855.t1 ID=Ggra1855.t1|Name=Ggra1855.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2505bp|location=Sequence derived from alignment at tig00000050_pilon:953433..955937- (Gracilaria gracilis GNS1m male)
ATGCAGGCAACTGCCAATTCAGTGACTGATGTCATCCTTCGACAACACCC GTGCTCTCCGCCTGTACCGTTGTCTCTTGATCCCCTCACAACCGGTTTGC ACTGCATACACGCTCCTTTAAACTCTCCTCCGCTCTCATTCTCCAACCTT CTCTCATTGTTTGAATACCTGCGTCATTTATCAGCTCGCCCTGCCATAGA ACGGGAGAAAACCATTTTCCGTATTGCTCGCCGCAGTGCACGCGTGCTTG GGTCCATCTTTGATATTCCCACTGTTTGTGGATGGGCCGTCTTTCAGAAG ATCGCTCATGTTGACACTCGACTTGCGGCTTTAATAGGCTCCACCTATGT CTATGCCAGTTTGCCATCCGCGCTCGTGCCGTTTGATGACGTGCGTCCTT CTAAAGAATGCCATCCAGAAGTAGCCCCCTACACTCAACTCGCCAGTGTG TTACATGAAGCGCTTGACTGTTTATTGCTATCTTCCGGTCAGAAGCACGA CCTCCATCTGCGCAATATATACCCTCATTCAGTTTGGTCGTACGGAACAC TCTTTTCAGAAGGACAAGTGCGACGCCTCGCTCCAATCGCTCCACCGCCG CGAATTTTCTCCCGATACGTCGAGTGTCCAGTCGTTGGGGAGATGCTGGG TGTACCCGGGGAAGTCTGTCGCCATGGCTGGATCACTTTCTTTCACGCGC TCGTTCCAACATGTGTGAGCGGCGGATTGGATTTCTCATGTCCAGCGCCA TTGGCGCGATTCATGCCGCGCTCTTTTCCCCGTCAAAAGGCTGTTCCTGC CTCGCTTTTGCTTGAAGATCTCACGGCGCCAGAACTATATTATCTGATTA GAATTGAACAAGTTGCTACTGGTGGAGATGTAACTGCTGTTTATCACGAG GCGCTACAGTTTACCGACAAATCGCAAGGACTGCATCAGGAGTTTCATGA TAGGGTTCTTCACTGCGAAGCACTCGCAGTTAAAGTGAAGAGGGAGCAAG CAGAAGACACATTCGATGTTGATCATCTTCGCAAACGATCGGCAGAAAAC AACAAGGTTCTCGCTTACGCAGAGCAGGCCATGTGTGAAGCGTCTTCAAG CGATGAAGAATTCGAAGGCTACACAGATAAGGGCGACTTTGCTTTTGTGT ATAAACGAGACGCCCGTCAGCCATTTGCTGAACTTGATGGCTATGACGGC TGGTGCGACGAGGTTCTTACGGAGAAGAAGCACAAGGCTTGGGCTGTGTA TCATCCCGAGATATTGATGCCATCTGAAGTGGCGGCACTTTACCTTGACA TTGGGGTCCGTCTGTATTGCGATTCCGGACGAAGCGTGATCATACGGGAA GATGCAGAAGCTGCAGACGCTGCAATGGATGGCATTGACGACACGGTGAT TGCTGACGACGTGCTATGGACGGAGCTTAAGCCGTTACTGGACGGCTTTC ACGCAGGAGTGAAGAATGCTGCGGATCGATTTGTGGTGGCACTACTTGTA TCAGGGCAGGTTCGTCTCTATGGGTTGTACGGGTGTGTGGACCCATCTGA AGCGCGTCATATTGGGAGGAGCATAGGGATCTTCATGGACGCACCATTGC AGGTGTTAGCTTTCAAGCTGAAAGAGCGGCAGTTGTCCGCTCGAAACGAC GATCGCGATTGTCTGTTGATCCCTGTTGGACCCGCGTGCACGATTGTGAT GCGCTTCGTGACGGAGAAGTACTCGGGCAAGTACGGCAGGGTGCACCACT CGGAGTCGGTGGTGGTGATGCCAGTGGGATGCAGACTGGGCGACCGCAGG CAGCTGAAATGGTACGCGGTGGGCGCAGGACTGTTCGAAGCGAATGGTGC GGCGCCGGTGTCTCTGGTGGAGATGAGCGCGCATCAGCTGGACGTGCTGT CGTGCTCGGCGACGGCGGAGAGCGACCACGTGGTGGTTTCCGCGAAGAAG GGGGCGGCGTCGGTGCGGCTACGCGACATTGGGTTCGAGGCCGGGTGGAC GGGGTGGTCGCCGCATCTGGTGATCTCTGGAAAGGGAAAGCGCATCGTGA CGTCGGTGCGCGCCCACAGCCTGACGCACCTGGTGGACGTGCTGCGGAGA ATGAGGGACGGCGGCAAGGAGGTGAATTTGGTGTATAGCATTCAGGAAGT GGCTGCGGCGGTGGTGCTTAGGGAGGTGCTGATTGGAGCGCTGCGCGTGA CGAGGGTGGGCGCGGGGCTGCGGTGGGTGCCGACGTGGAAGATGGCGGAG CAGGGCTTTGTGGTGGCGCATGAGATGGAGCTGGCACGCGGAGTGGGCTG TCGCGTGGGCGGTGAGGGCGAGATTGGAATTTTGGTGACGAACGACACGA TGGCGCTGTTTGCAGTGCGTGGGGAGAGGGGGGGCTGCTGGGATTTGTTG TTTGTGCGATTGGATGCGAACATCGAGTCGGAGAAACTGCTGGTGGCTCC GCAGTTTGAAGGCTTTTGCTGGCGCGTTTGCGGCGGGAAGATGGGCGCCC GGTAG
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Coding sequence (CDS) from alignment at tig00000050_pilon:953433..955937-

>Ggra1855.t1 ID=Ggra1855.t1|Name=Ggra1855.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2505bp|location=Sequence derived from alignment at tig00000050_pilon:953433..955937- (Gracilaria gracilis GNS1m male)
ATGCAGGCAACTGCCAATTCAGTGACTGATGTCATCCTTCGACAACACCC
GTGCTCTCCGCCTGTACCGTTGTCTCTTGATCCCCTCACAACCGGTTTGC
ACTGCATACACGCTCCTTTAAACTCTCCTCCGCTCTCATTCTCCAACCTT
CTCTCATTGTTTGAATACCTGCGTCATTTATCAGCTCGCCCTGCCATAGA
ACGGGAGAAAACCATTTTCCGTATTGCTCGCCGCAGTGCACGCGTGCTTG
GGTCCATCTTTGATATTCCCACTGTTTGTGGATGGGCCGTCTTTCAGAAG
ATCGCTCATGTTGACACTCGACTTGCGGCTTTAATAGGCTCCACCTATGT
CTATGCCAGTTTGCCATCCGCGCTCGTGCCGTTTGATGACGTGCGTCCTT
CTAAAGAATGCCATCCAGAAGTAGCCCCCTACACTCAACTCGCCAGTGTG
TTACATGAAGCGCTTGACTGTTTATTGCTATCTTCCGGTCAGAAGCACGA
CCTCCATCTGCGCAATATATACCCTCATTCAGTTTGGTCGTACGGAACAC
TCTTTTCAGAAGGACAAGTGCGACGCCTCGCTCCAATCGCTCCACCGCCG
CGAATTTTCTCCCGATACGTCGAGTGTCCAGTCGTTGGGGAGATGCTGGG
TGTACCCGGGGAAGTCTGTCGCCATGGCTGGATCACTTTCTTTCACGCGC
TCGTTCCAACATGTGTGAGCGGCGGATTGGATTTCTCATGTCCAGCGCCA
TTGGCGCGATTCATGCCGCGCTCTTTTCCCCGTCAAAAGGCTGTTCCTGC
CTCGCTTTTGCTTGAAGATCTCACGGCGCCAGAACTATATTATCTGATTA
GAATTGAACAAGTTGCTACTGGTGGAGATGTAACTGCTGTTTATCACGAG
GCGCTACAGTTTACCGACAAATCGCAAGGACTGCATCAGGAGTTTCATGA
TAGGGTTCTTCACTGCGAAGCACTCGCAGTTAAAGTGAAGAGGGAGCAAG
CAGAAGACACATTCGATGTTGATCATCTTCGCAAACGATCGGCAGAAAAC
AACAAGGTTCTCGCTTACGCAGAGCAGGCCATGTGTGAAGCGTCTTCAAG
CGATGAAGAATTCGAAGGCTACACAGATAAGGGCGACTTTGCTTTTGTGT
ATAAACGAGACGCCCGTCAGCCATTTGCTGAACTTGATGGCTATGACGGC
TGGTGCGACGAGGTTCTTACGGAGAAGAAGCACAAGGCTTGGGCTGTGTA
TCATCCCGAGATATTGATGCCATCTGAAGTGGCGGCACTTTACCTTGACA
TTGGGGTCCGTCTGTATTGCGATTCCGGACGAAGCGTGATCATACGGGAA
GATGCAGAAGCTGCAGACGCTGCAATGGATGGCATTGACGACACGGTGAT
TGCTGACGACGTGCTATGGACGGAGCTTAAGCCGTTACTGGACGGCTTTC
ACGCAGGAGTGAAGAATGCTGCGGATCGATTTGTGGTGGCACTACTTGTA
TCAGGGCAGGTTCGTCTCTATGGGTTGTACGGGTGTGTGGACCCATCTGA
AGCGCGTCATATTGGGAGGAGCATAGGGATCTTCATGGACGCACCATTGC
AGGTGTTAGCTTTCAAGCTGAAAGAGCGGCAGTTGTCCGCTCGAAACGAC
GATCGCGATTGTCTGTTGATCCCTGTTGGACCCGCGTGCACGATTGTGAT
GCGCTTCGTGACGGAGAAGTACTCGGGCAAGTACGGCAGGGTGCACCACT
CGGAGTCGGTGGTGGTGATGCCAGTGGGATGCAGACTGGGCGACCGCAGG
CAGCTGAAATGGTACGCGGTGGGCGCAGGACTGTTCGAAGCGAATGGTGC
GGCGCCGGTGTCTCTGGTGGAGATGAGCGCGCATCAGCTGGACGTGCTGT
CGTGCTCGGCGACGGCGGAGAGCGACCACGTGGTGGTTTCCGCGAAGAAG
GGGGCGGCGTCGGTGCGGCTACGCGACATTGGGTTCGAGGCCGGGTGGAC
GGGGTGGTCGCCGCATCTGGTGATCTCTGGAAAGGGAAAGCGCATCGTGA
CGTCGGTGCGCGCCCACAGCCTGACGCACCTGGTGGACGTGCTGCGGAGA
ATGAGGGACGGCGGCAAGGAGGTGAATTTGGTGTATAGCATTCAGGAAGT
GGCTGCGGCGGTGGTGCTTAGGGAGGTGCTGATTGGAGCGCTGCGCGTGA
CGAGGGTGGGCGCGGGGCTGCGGTGGGTGCCGACGTGGAAGATGGCGGAG
CAGGGCTTTGTGGTGGCGCATGAGATGGAGCTGGCACGCGGAGTGGGCTG
TCGCGTGGGCGGTGAGGGCGAGATTGGAATTTTGGTGACGAACGACACGA
TGGCGCTGTTTGCAGTGCGTGGGGAGAGGGGGGGCTGCTGGGATTTGTTG
TTTGTGCGATTGGATGCGAACATCGAGTCGGAGAAACTGCTGGTGGCTCC
GCAGTTTGAAGGCTTTTGCTGGCGCGTTTGCGGCGGGAAGATGGGCGCCC
GGTAG
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