Ggra904.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra904.t1
Unique NameGgra904.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length343
Homology
BLAST of Ggra904.t1 vs. uniprot
Match: A0A2V3J6F3 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6F3_9FLOR)

HSP 1 Score: 434 bits (1115), Expect = 1.090e-149
Identity = 211/339 (62.24%), Postives = 269/339 (79.35%), Query Frame = 0
Query:    1 MVLIRLKAPFVSVIVTVLSTLAELALLSFLVVVNNVQECRRLRNGKSVRVGRHLMRTRIISILSLATFFFLEVAFAFYNDPVNNVRLETHACVTVSNSVLERGESTSFFRAADVVVACRTLANGTITQFGGNFSRQTQQVECSSQPLYTHPVDDRTVNESVSGVPFSCLQD-DEGDICVFMQQKGNLSLVSRPFVLDDLEFLPDIFPYLPTELHFEPPLNLTQFGERAIRAFMNNVVGPSALRRIIYSGAGEGNCTFPVPDGTATTVPLAMLIALSVVWAIAILLFFSVLRLRKAVFFEIDNPMDWATRSVRPLDDPLGENPILMGVEDEERMLVQVAT 338
            MVLIRLKAPFVSVIVTVLSTLAELALLSFL V+NN+ EC++L+ G+SV+V +HL RTR++S++ L  FF LEV F+FYNDPVNNV++E H C+T SNSV + G+ST F RA+D++V CR L NGTITQFGGNFS +TQQVECS++ +YTHP+ D T  E V+ VPF C+   +EG  CVF+QQ+GNLSL+S PF LD+L  LPD  P++ TELHF PP N++ F  RA  AF+ N+ GPSALRRIIYSGA E  C FPV  G+ATTVPLAM++AL+ VWA+A+ +F SV  LR+ VFF++D+PM WATRSVR  DDPLG+NP+L G+  +++ LV ++T
Sbjct:    1 MVLIRLKAPFVSVIVTVLSTLAELALLSFLFVLNNLHECKQLQRGRSVQVRQHLRRTRLLSVVCLGAFFALEVVFSFYNDPVNNVQIEIHECITASNSVKDSGDSTQFLRASDILVECRRLDNGTITQFGGNFSSRTQQVECSTEAMYTHPLGDETSEEIVADVPFGCVSGGEEGAACVFVQQRGNLSLISAPFFLDELSILPDTLPHIITELHFTPPSNVSLFATRATNAFLQNIQGPSALRRIIYSGASEDQCAFPVVRGSATTVPLAMIVALAAVWAVALAMFASVFALRRGVFFKLDDPMHWATRSVRAADDPLGDNPVLTGLMQDDKTLVHIST 339          
BLAST of Ggra904.t1 vs. uniprot
Match: A0A2V3IT05 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 150 bits (380), Expect = 1.730e-38
Identity = 104/371 (28.03%), Postives = 171/371 (46.09%), Query Frame = 0
Query:    1 MVLIRLKAPFVSVIVTVLSTLAELALLSFLVVVNNVQECRRLRNGKSVRVGRHLMRTRIISILSLATFFFLEVAFAFYNDPVNNVRLETHACVTVSNSVLERGESTSFFRAADVVVACRTLANGTITQFGGNFSRQTQ---QVECSSQPLYTHPVDD----------RT-------VNESVSGVPFSCLQDDEGDICVFMQQ---------KGNLSLVSRPFVLDDLEFLPDIFPYLPTELHFEPPLNLTQFGERAIRAFMNNVVGPSALRRIIYSGAGEGNCTFPVPDGTATTVPLAMLIALSVVWAIAILLFFSVLRLRKAVFFEIDNPMDWATRSVRPLDDPLGENPILMGVEDEERMLVQVATFVAN 342
            MV I LK+ FVS+IVT++S LAEL L   L+  N   EC  LR G+ V V  H +R + +++L++  F FLEV  +F++DP   ++  T  C+ V    L  G +        +++ C  +      Q  GNFS       +V C    LY +P +D          RT       V E +   P    +     +C  ++Q            LS   R   +  L     + P+L T + +        F  R +RA+  +V  P  +R+ ++ G     C F       TTVPL ++  +   W ++ L F S L LR+++F+++ +P+ WA R+ R +D+P+  NP++  V +    L+ V+   +N
Sbjct:    1 MVEIPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVRLHRIRAKFLAVLAMVVFIFLEVIMSFFSDPAIEIKFRTDECLAVDRIDLREGFTGDTNDEDFILIRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEYPNEDDLQFTLTNVTRTGGTDTDLVLECILPTPAVGEKPPTERLCAAVRQLPPNSIGFTNVYLSAAVRESEVGPLVNQQVVIPFLETSVRYNTSGLSRNFARRLLRAYDKDVTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLLRRSIFYDMSDPLHWAQRTYRHIDEPIVGNPVVTSVYEHGERLMYVSGSASN 371          
BLAST of Ggra904.t1 vs. uniprot
Match: A0A2V3ISI7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISI7_9FLOR)

HSP 1 Score: 147 bits (370), Expect = 2.140e-37
Identity = 105/328 (32.01%), Postives = 166/328 (50.61%), Query Frame = 0
Query:    1 MVLIRLKAPFVSVIVTVLSTLAELALLSFLVVVNNVQECRRLRNGKSVRVGRHLMRTRIISILSLATFFFLEVAFAFYNDPVNNVRLETHACVTVSNSVLERGESTSFFRAADVVVACRTLANGTITQFGGNFSRQTQQVECSSQPLYTHPVDDRTVNESVSGV-PFSCLQDDEGDICVFMQQKGNLSLVSRPFVLD-DLEFLPD---IFPYLPTELHFEPPLNLTQFGERAIRAFMNNVVGPSALRRIIYSGAGEGNCTFPVPDGTATTVPLAMLIALSVVWAIAILLFFSVLRLRKAVFFEIDNPMDWATRSVRPLDDPLGENPIL 323
            MVLI LK+ + S+I T+LS LAELALLS ++  N   ECR L NG  V V  H  RTR +++ +   F FLEV+ +F++DP       T +C+++    + RG      RAA V + C       + Q  GN S    +++C    L++  +   + NE V       C+ D E ++C F+   G+  +     VLD DL F+ D         T +++       +   R+I    + V     LRR +++GA E  C F V    ATT+    L A++V W +++  F   L +R  VF+++ +P+DWA ++VR  D    +NP++
Sbjct:    1 MVLIPLKSQYTSLIATILSGLAELALLSAVLGYNKYLECRALENGGRVNVRHHRFRTRALTVAATLAFVFLEVSNSFFSDPALKRGEVTKSCISLDALPIRRGMLDISLRAAVVGINCLGTNTSLLWQLAGNIS-DDGEIKCGDDFLFSADIH-HSPNEPVPDEHTMECILDGELNLCAFLYSNGS-EVTFTEIVLDTDLSFVLDNNYALRVWKTTVYYNTTGMERELLRRSITLARDLVTDQFVLRREVFAGAEETECNFDV-FSPATTIKEGFLYAIAVAWTLSLAAFLGSLAIRGRVFYDMSDPLDWARQTVRDEDSSDIDNPVV 324          
The following BLAST results are available for this feature:
BLAST of Ggra904.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J6F31.090e-14962.24Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IT051.730e-3828.03Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ISI72.140e-3732.01Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 268..289
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 290..342
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 37..56
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..36
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..267
NoneNo IPR availableTMHMMTMhelixcoord: 59..78
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 266..288

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:285935..286963 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra904.t1Ggra904.t1Gracilaria gracilis GNS1m malemRNAtig00000049_pilon 285935..286963 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra904.t1 ID=Ggra904.t1|Name=Ggra904.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=343bp
MVLIRLKAPFVSVIVTVLSTLAELALLSFLVVVNNVQECRRLRNGKSVRV
GRHLMRTRIISILSLATFFFLEVAFAFYNDPVNNVRLETHACVTVSNSVL
ERGESTSFFRAADVVVACRTLANGTITQFGGNFSRQTQQVECSSQPLYTH
PVDDRTVNESVSGVPFSCLQDDEGDICVFMQQKGNLSLVSRPFVLDDLEF
LPDIFPYLPTELHFEPPLNLTQFGERAIRAFMNNVVGPSALRRIIYSGAG
EGNCTFPVPDGTATTVPLAMLIALSVVWAIAILLFFSVLRLRKAVFFEID
NPMDWATRSVRPLDDPLGENPILMGVEDEERMLVQVATFVAN*
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