Ggra904.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra904.t1
Unique NameGgra904.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length343
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000049_piloncontigtig00000049_pilon:285935..286963 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra904Ggra904Gracilaria gracilis GNS1m malegenetig00000049_pilon 285935..286963 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra904.t1.start1Ggra904.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000049_pilon 285935..285937 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra904.t1.CDS1Ggra904.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000049_pilon 285935..286963 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra904.t1.exon1Ggra904.t1.exon1Gracilaria gracilis GNS1m maleexontig00000049_pilon 285935..286963 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra904.t1.stop1Ggra904.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000049_pilon 286961..286963 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra904.t1Ggra904.t1Gracilaria gracilis GNS1m malepolypeptidetig00000049_pilon 285935..286963 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra904.t1 ID=Ggra904.t1|Name=Ggra904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=343bp
MVLIRLKAPFVSVIVTVLSTLAELALLSFLVVVNNVQECRRLRNGKSVRV
GRHLMRTRIISILSLATFFFLEVAFAFYNDPVNNVRLETHACVTVSNSVL
ERGESTSFFRAADVVVACRTLANGTITQFGGNFSRQTQQVECSSQPLYTH
PVDDRTVNESVSGVPFSCLQDDEGDICVFMQQKGNLSLVSRPFVLDDLEF
LPDIFPYLPTELHFEPPLNLTQFGERAIRAFMNNVVGPSALRRIIYSGAG
EGNCTFPVPDGTATTVPLAMLIALSVVWAIAILLFFSVLRLRKAVFFEID
NPMDWATRSVRPLDDPLGENPILMGVEDEERMLVQVATFVAN*
back to top

spliced messenger RNA

>Ggra904.t1 ID=Ggra904.t1|Name=Ggra904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000049_pilon:285935..286963+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGCTCATTCGATTGAAAGCGCCATTCGTCAGTGTGATAGTGACCGT
ACTATCCACACTAGCCGAGCTTGCTTTGCTCTCCTTTCTAGTCGTTGTGA
ACAACGTGCAGGAATGCAGACGGCTTCGAAATGGGAAGAGTGTCAGAGTC
GGTCGCCATCTCATGCGCACTCGCATCATCTCCATCTTATCTTTGGCTAC
TTTCTTCTTTCTCGAGGTGGCGTTCGCCTTCTACAATGACCCGGTGAATA
ACGTTCGTTTGGAAACTCATGCTTGTGTAACTGTGTCTAACTCTGTGCTG
GAACGAGGTGAATCGACGAGCTTTTTCAGAGCGGCTGATGTGGTCGTGGC
ATGTAGGACATTAGCAAATGGCACCATTACTCAATTTGGCGGCAACTTTA
GCAGACAGACTCAACAAGTGGAATGCTCTTCACAACCCCTGTACACCCAT
CCCGTCGACGATCGCACAGTGAACGAGAGCGTTTCTGGTGTCCCATTTAG
CTGCCTTCAAGACGATGAAGGTGATATCTGCGTATTCATGCAACAAAAAG
GAAACCTTTCACTCGTATCTCGACCTTTCGTTCTCGATGACCTCGAGTTT
CTTCCCGACATTTTTCCGTATCTTCCGACCGAGCTCCATTTTGAGCCGCC
ATTGAACCTCACACAATTTGGCGAGCGAGCCATAAGGGCGTTTATGAACA
ACGTAGTCGGGCCATCAGCTTTAAGAAGAATCATCTACAGTGGGGCCGGA
GAGGGCAACTGCACCTTTCCAGTTCCAGATGGGACTGCGACCACCGTTCC
ATTGGCAATGTTGATTGCCTTGTCAGTAGTTTGGGCAATCGCAATTCTGT
TATTCTTCTCAGTGTTACGACTTCGCAAAGCTGTTTTCTTTGAGATTGAT
AACCCGATGGATTGGGCTACAAGAAGTGTGAGACCTCTGGACGATCCTTT
GGGTGAGAACCCAATTTTGATGGGAGTTGAAGATGAGGAAAGAATGCTAG
TCCAAGTCGCAACTTTtgtagcaaattag
back to top

protein sequence of Ggra904.t1

>Ggra904.t1 ID=Ggra904.t1|Name=Ggra904.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=343bp
MVLIRLKAPFVSVIVTVLSTLAELALLSFLVVVNNVQECRRLRNGKSVRV
GRHLMRTRIISILSLATFFFLEVAFAFYNDPVNNVRLETHACVTVSNSVL
ERGESTSFFRAADVVVACRTLANGTITQFGGNFSRQTQQVECSSQPLYTH
PVDDRTVNESVSGVPFSCLQDDEGDICVFMQQKGNLSLVSRPFVLDDLEF
LPDIFPYLPTELHFEPPLNLTQFGERAIRAFMNNVVGPSALRRIIYSGAG
EGNCTFPVPDGTATTVPLAMLIALSVVWAIAILLFFSVLRLRKAVFFEID
NPMDWATRSVRPLDDPLGENPILMGVEDEERMLVQVATFVAN*
back to top

mRNA from alignment at tig00000049_pilon:285935..286963+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra904.t1 ID=Ggra904.t1|Name=Ggra904.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1029bp|location=Sequence derived from alignment at tig00000049_pilon:285935..286963+ (Gracilaria gracilis GNS1m male)
ATGGTGCTCATTCGATTGAAAGCGCCATTCGTCAGTGTGATAGTGACCGT
ACTATCCACACTAGCCGAGCTTGCTTTGCTCTCCTTTCTAGTCGTTGTGA
ACAACGTGCAGGAATGCAGACGGCTTCGAAATGGGAAGAGTGTCAGAGTC
GGTCGCCATCTCATGCGCACTCGCATCATCTCCATCTTATCTTTGGCTAC
TTTCTTCTTTCTCGAGGTGGCGTTCGCCTTCTACAATGACCCGGTGAATA
ACGTTCGTTTGGAAACTCATGCTTGTGTAACTGTGTCTAACTCTGTGCTG
GAACGAGGTGAATCGACGAGCTTTTTCAGAGCGGCTGATGTGGTCGTGGC
ATGTAGGACATTAGCAAATGGCACCATTACTCAATTTGGCGGCAACTTTA
GCAGACAGACTCAACAAGTGGAATGCTCTTCACAACCCCTGTACACCCAT
CCCGTCGACGATCGCACAGTGAACGAGAGCGTTTCTGGTGTCCCATTTAG
CTGCCTTCAAGACGATGAAGGTGATATCTGCGTATTCATGCAACAAAAAG
GAAACCTTTCACTCGTATCTCGACCTTTCGTTCTCGATGACCTCGAGTTT
CTTCCCGACATTTTTCCGTATCTTCCGACCGAGCTCCATTTTGAGCCGCC
ATTGAACCTCACACAATTTGGCGAGCGAGCCATAAGGGCGTTTATGAACA
ACGTAGTCGGGCCATCAGCTTTAAGAAGAATCATCTACAGTGGGGCCGGA
GAGGGCAACTGCACCTTTCCAGTTCCAGATGGGACTGCGACCACCGTTCC
ATTGGCAATGTTGATTGCCTTGTCAGTAGTTTGGGCAATCGCAATTCTGT
TATTCTTCTCAGTGTTACGACTTCGCAAAGCTGTTTTCTTTGAGATTGAT
AACCCGATGGATTGGGCTACAAGAAGTGTGAGACCTCTGGACGATCCTTT
GGGTGAGAACCCAATTTTGATGGGAGTTGAAGATGAGGAAAGAATGCTAG
TCCAAGTCGCAACTTTtgtagcaaattag
back to top

Coding sequence (CDS) from alignment at tig00000049_pilon:285935..286963+

>Ggra904.t1 ID=Ggra904.t1|Name=Ggra904.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1029bp|location=Sequence derived from alignment at tig00000049_pilon:285935..286963+ (Gracilaria gracilis GNS1m male)
ATGGTGCTCATTCGATTGAAAGCGCCATTCGTCAGTGTGATAGTGACCGT
ACTATCCACACTAGCCGAGCTTGCTTTGCTCTCCTTTCTAGTCGTTGTGA
ACAACGTGCAGGAATGCAGACGGCTTCGAAATGGGAAGAGTGTCAGAGTC
GGTCGCCATCTCATGCGCACTCGCATCATCTCCATCTTATCTTTGGCTAC
TTTCTTCTTTCTCGAGGTGGCGTTCGCCTTCTACAATGACCCGGTGAATA
ACGTTCGTTTGGAAACTCATGCTTGTGTAACTGTGTCTAACTCTGTGCTG
GAACGAGGTGAATCGACGAGCTTTTTCAGAGCGGCTGATGTGGTCGTGGC
ATGTAGGACATTAGCAAATGGCACCATTACTCAATTTGGCGGCAACTTTA
GCAGACAGACTCAACAAGTGGAATGCTCTTCACAACCCCTGTACACCCAT
CCCGTCGACGATCGCACAGTGAACGAGAGCGTTTCTGGTGTCCCATTTAG
CTGCCTTCAAGACGATGAAGGTGATATCTGCGTATTCATGCAACAAAAAG
GAAACCTTTCACTCGTATCTCGACCTTTCGTTCTCGATGACCTCGAGTTT
CTTCCCGACATTTTTCCGTATCTTCCGACCGAGCTCCATTTTGAGCCGCC
ATTGAACCTCACACAATTTGGCGAGCGAGCCATAAGGGCGTTTATGAACA
ACGTAGTCGGGCCATCAGCTTTAAGAAGAATCATCTACAGTGGGGCCGGA
GAGGGCAACTGCACCTTTCCAGTTCCAGATGGGACTGCGACCACCGTTCC
ATTGGCAATGTTGATTGCCTTGTCAGTAGTTTGGGCAATCGCAATTCTGT
TATTCTTCTCAGTGTTACGACTTCGCAAAGCTGTTTTCTTTGAGATTGAT
AACCCGATGGATTGGGCTACAAGAAGTGTGAGACCTCTGGACGATCCTTT
GGGTGAGAACCCAATTTTGATGGGAGTTGAAGATGAGGAAAGAATGCTAG
TCCAAGTCGCAACTTTtgtagcaaattag
back to top