Ggra6114.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6114.t1
Unique NameGgra6114.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length702
Homology
BLAST of Ggra6114.t1 vs. uniprot
Match: A0A2V3IPI6 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPI6_9FLOR)

HSP 1 Score: 300 bits (767), Expect = 2.340e-92
Identity = 168/292 (57.53%), Postives = 208/292 (71.23%), Query Frame = 0
Query:  404 LGTSHTRRSDNLTLLTRRAPPPQTCGRFFKVSAENGVQVHSFDPAAFDSDAETDGPPSDSFAWRREHSRIRTSLSLNSISSRLDTDSTLRRARRSFTRPVTPTMAPFSRDRATSFYHGKSRLHHSVSNDDIIGAVNPQRLQQLLGEDYVLFC----SSNVKTTQPPARQQRQNSNTNKHSRSMRSILFSSRRPGFNVSLVSAGSFRAESDEERDVEQFSRMLAAERSNDDRPSCASIPLFVEEIGRVPRVAVVDGRARRVRVRRLRGASYRMKTSQTQGSNVFSRCFGVCLH 691
            L +   RRSD+LT+LTRRAPPP+TCGRFFKV A+N V++H+ DP  FDSDA+TDGPPSDSFAWRREHSRIRTS S+NS+SSR+DTD   RR RR    P TPT+ P SRDRA SFY  KS    + + DD++GA++PQRL+QLLG+DY LFC    S + +  Q P      +S+TN         L+ S + G  VSLVS GSFRAESD+E+DVEQ SR L A R N   P   S+PLFVEEIGRVPRVAVVDG+ARR+RVR+   AS+R   S    +++ +RCFG C++
Sbjct:    8 LRSPEQRRSDHLTILTRRAPPPRTCGRFFKVPADNPVRIHAIDP--FDSDADTDGPPSDSFAWRREHSRIRTSSSVNSLSSRIDTDCPPRRPRR----PSTPTILPLSRDRAVSFYGAKSATAPAPTADDVLGAISPQRLKQLLGDDYALFCPSVNSKHAQQAQTPTHALAHSSSTN--------TLYVSEQTGLPVSLVSDGSFRAESDDEKDVEQLSRQLIA-RYNRSAPQSPSVPLFVEEIGRVPRVAVVDGKARRIRVRKPNAASFRAMPSHA--NSIIARCFGRCVN 282          
BLAST of Ggra6114.t1 vs. uniprot
Match: A0A2V3IJ32 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJ32_9FLOR)

HSP 1 Score: 285 bits (730), Expect = 2.150e-86
Identity = 166/364 (45.60%), Postives = 233/364 (64.01%), Query Frame = 0
Query:   23 MLPTRTYVAPPRSGEG-RSRSFRPSASSLPACAWICIIFIPLLWLVGTVESSRPFYHIFFAFLSLLPAFIVGRFVLTQFSDEAVSKSFLLSQFLLGAIPLSLMIVLVEMLLVVVFGVLLFSSDIQKYLD----SAPNVEA-ISRIGLYAMKRTVNSSFHSSDDPISKDADVDKLMEALGEQLPLWKLLVGAAFFAVVVAGVTEEVGKWTLARRYRKVNSLQENVEWDRHIGCRGILAIACMGALGFATVENYGFVVGLTASPEATFQFGFVVMTLFRGLLAFPIHVGAQFYVAVAAAQSYIFHEPISVVWPLSVAILIHALFDGLSMVMLVLIPRLGAPSWTGVSVPILQSLLTVLLVLLCRGR 380
            M  +  Y A P+  E  R+ S R S S  P CA IC + + L+WL   + S RPFY + F F+++LPA++V  FVL +F D AVSKSFL SQF+LGA+PLS  +++VE ++ +V  + LFSSD++K       S P+ +   +R  L+    T N+S  S+DD  + D    ++ME     LPLWKLL+ +   A VVA +TEE+GKW +ARRY+ VN L+ NV+  R I C+GIL++ACMGALGFAT E+  F +G++ +P + F    +    FR LLAFPIHVG Q Y+AVA AQ+++F EP  V+  L +A++ H  FD    V+ +L  +LG PSWT + VP +Q  L VLL++LCRGR
Sbjct:    1 MPQSHDYTAVPQPDEEPRTNSARVSTSDTPTCAIICAVAVSLIWLAFLLVSPRPFYAVLFTFVAILPAYLVALFVLRRFKDHAVSKSFLFSQFILGAVPLSFAVLIVETIIGLVIALTLFSSDMKKIKKLMAASVPSAQTHFNRNDLFQTIHTFNAS--STDDKSASDLLAQQVME----MLPLWKLLLMSILTAFVVAALTEELGKWLIARRYKLVNELEPNVDNARSISCKGILSVACMGALGFATAEHALFSMGMSLAPSSGFPLAQLTTLTFRALLAFPIHVGTQCYIAVATAQTFLFREPSRVLSALFLAVVFHGTFDATPFVLSLLYLKLGIPSWTMLLVPPVQVSLAVLLLVLCRGR 358          
BLAST of Ggra6114.t1 vs. uniprot
Match: R7QM26 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QM26_CHOCR)

HSP 1 Score: 218 bits (554), Expect = 1.030e-60
Identity = 146/363 (40.22%), Postives = 204/363 (56.20%), Query Frame = 0
Query:   25 PTRTYVAPPRSGEGRSRSFRPSASSLPACAWICIIFIPLLWLVGTVESSRPFYHIFFAFLSLLPAFIVGRFVLTQFSDEAVSKSFLLSQFLLGAIPLSLMIVLVEMLLVVVFGVLLFSSDIQKY---LDSAPNVEAISRIGLYAMKRTVNSSFHSSDDPISKDADVDKLMEALGEQLPLWKLLVGAAFFAVVVAGVTEEVGKWTLARRYRKVNSLQENVEWDR----HIGCRGILAIACMGALGFATVENYGFVVGLTASPEATFQFGFVVMTLFRGLLAFPIHVGAQFYVAVAAAQSYIFHEPISVVWPLSVAILIHALFDGLSMVMLVLIPRLGAPSWTGVSVPILQSLLTVLLVLLCRGR 380
            P+RT V    +G+  SR    S  SL   A + +IF+ L        S RPF+   F  LSLLPAF +  FV T+F D+++  ++LL+Q LLGAIPL L  ++ E LL    G L+F  ++++    +D+ P V+                          +D     L+  + E + LWK+++     A V AG  EEV KW LARRYRKV+  QEN E D      IGC+GILAIACMGALGFA  EN G+++    S    F F  V +TL RGLLA+P+H+G QF+VAV+AAQ Y+F +  +V+  L VA+L H  FDG++++ ++LI     P W G  +P+   +L  LL+LLCR R
Sbjct:   39 PSRTNV---EAGD-YSRMSSGSRISLVTIAIMLVIFVAL--------SPRPFFTSLFVLLSLLPAFPIIHFVRTKFDDKSIGWTYLLNQLLLGAIPLVLFTIIAEWLLTFGIGFLIFEKELREVEIAIDTPPTVD--------------------------EDGKRHDLLANVLEHVALWKMILFFLLIAFVTAGFIEEVAKWMLARRYRKVD--QENAELDADSGARIGCKGILAIACMGALGFAACENMGYILVSALSIRKGFSFRLVGITLLRGLLAYPLHIGTQFFVAVSAAQWYVFKDKSNVMLALFVAVLFHGTFDGVALLGMLLIGGNIIPFWVGYLIPVFDFMLVGLLLLLCRSR 361          
BLAST of Ggra6114.t1 vs. uniprot
Match: R7QJI0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJI0_CHOCR)

HSP 1 Score: 202 bits (514), Expect = 4.610e-55
Identity = 130/337 (38.58%), Postives = 193/337 (57.27%), Query Frame = 0
Query:   57 CIIFIPLLWLVGTVES--SRPFYHIFFAF--LSLLPAFIVGRFVLTQFSDEAVSKSFLLSQFLLGAIPLSLMIVLVEM------LLVVVFGVLL-FSSDIQKYLDSAPNVEAISRIGLYAMKRTVNSSFHSSDDPISKDADVDKLMEALGEQLPLWKLLVGAAFFAVVVAGVTEEVGKWTLARRYRKVNSLQENVEWDRHIGCRGILAIACMGALGFATVENYGFVVGLT--ASPEATFQFGFVVMTLFRGLLAFPIHVGAQFYVAVAAAQSYIFHEPISVVWPLSVAILIHALFDGLSMVMLVLIPRLGAPSWTGVSVPILQSLLTVLLVLLCRGR 380
            C++F+ LL+++    +  + P Y + F F  +SLLPA +VG F+L++F DE V + FL  QFL+GAIPL L I+ +E+      L+ +VF +      D+ K +++A                                  V +L++ L + +PLW +++     A V AG  EEVGKW +ARRY  +  +    E  R +GCRGI+A ACM ALGFAT+EN G+V G+   AS  ++ +  FV + LFRGLLAFP+HVG Q YVA+ A+Q +IF + +SV W L  AIL H  FD L+ +   L+     P+W G+ VP++  ++ VLL+L+CR R
Sbjct:   49 CLLFLVLLFILRLFFAVFTTPDYGVGFLFVLISLLPAAVVGWFILSRFRDEIVGRPFLFLQFLIGAIPLILFIIPLELITTAAALIPIVFAIRGDLEEDLPKIIEAAEG---------------------------GNSKAVQQLIQQLAQSIPLWAIILSLVLIAYVTAGTVEEVGKWLVARRYIGLECICGQDE--RKVGCRGIMASACMAALGFATIENIGYVSGMARAASQNSSAELLFVFLGLFRGLLAFPVHVGTQLYVAITASQRHIFMDDVSVPWALFHAILFHGTFDVLAFLSGALVTLRLWPAWIGLLVPVIDIIMVVLLLLVCRAR 356          
The following BLAST results are available for this feature:
BLAST of Ggra6114.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IPI62.340e-9257.53Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IJ322.150e-8645.60Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QM261.030e-6040.22Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QJI04.610e-5538.58Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026898Intramembrane metalloprotease PrsWPFAMPF13367PrsW-proteasecoord: 202..346
e-value: 4.4E-11
score: 42.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 562..582
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 350..354
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 76..97
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 223..250
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 49..70
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 71..75
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 324..349
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 355..377
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 200..222
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 98..108
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 272..290
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 109..141
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..48
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 251..271
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 291..312
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 142..199
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 313..323
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 378..701
NoneNo IPR availableTMHMMTMhelixcoord: 353..375
NoneNo IPR availableTMHMMTMhelixcoord: 76..98
NoneNo IPR availableTMHMMTMhelixcoord: 47..69
NoneNo IPR availableTMHMMTMhelixcoord: 250..272
NoneNo IPR availableTMHMMTMhelixcoord: 282..304
NoneNo IPR availableTMHMMTMhelixcoord: 118..140
NoneNo IPR availableTMHMMTMhelixcoord: 316..338

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:585834..588941 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6114.t1Ggra6114.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 585834..588941 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6114.t1 ID=Ggra6114.t1|Name=Ggra6114.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=702bp
MAVEKSSDPEHEEASQFEDNPDMLPTRTYVAPPRSGEGRSRSFRPSASSL
PACAWICIIFIPLLWLVGTVESSRPFYHIFFAFLSLLPAFIVGRFVLTQF
SDEAVSKSFLLSQFLLGAIPLSLMIVLVEMLLVVVFGVLLFSSDIQKYLD
SAPNVEAISRIGLYAMKRTVNSSFHSSDDPISKDADVDKLMEALGEQLPL
WKLLVGAAFFAVVVAGVTEEVGKWTLARRYRKVNSLQENVEWDRHIGCRG
ILAIACMGALGFATVENYGFVVGLTASPEATFQFGFVVMTLFRGLLAFPI
HVGAQFYVAVAAAQSYIFHEPISVVWPLSVAILIHALFDGLSMVMLVLIP
RLGAPSWTGVSVPILQSLLTVLLVLLCRGRRQQRPGRAITYEIQSCKAGN
PRQLGTSHTRRSDNLTLLTRRAPPPQTCGRFFKVSAENGVQVHSFDPAAF
DSDAETDGPPSDSFAWRREHSRIRTSLSLNSISSRLDTDSTLRRARRSFT
RPVTPTMAPFSRDRATSFYHGKSRLHHSVSNDDIIGAVNPQRLQQLLGED
YVLFCSSNVKTTQPPARQQRQNSNTNKHSRSMRSILFSSRRPGFNVSLVS
AGSFRAESDEERDVEQFSRMLAAERSNDDRPSCASIPLFVEEIGRVPRVA
VVDGRARRVRVRRLRGASYRMKTSQTQGSNVFSRCFGVCLHPSARAGVEE
E*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR026898PrsW