Ggra6114.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6114.t1
Unique NameGgra6114.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length702
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:585834..588941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6114Ggra6114Gracilaria gracilis GNS1m malegenetig00000045_pilon 585834..588941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6114.t1Ggra6114.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 585834..588941 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6114.t1.stop1Ggra6114.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 585834..585836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6114.t1.CDS1Ggra6114.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 585834..586712 -
Ggra6114.t1.CDS2Ggra6114.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 586802..586889 -
Ggra6114.t1.CDS3Ggra6114.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000045_pilon 587803..588941 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6114.t1.exon1Ggra6114.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 585834..586712 -
Ggra6114.t1.exon2Ggra6114.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 586802..586889 -
Ggra6114.t1.exon3Ggra6114.t1.exon3Gracilaria gracilis GNS1m maleexontig00000045_pilon 587803..588941 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6114.t1.intron1Ggra6114.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 586713..586801 -
Ggra6114.t1.intron2Ggra6114.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000045_pilon 586890..587802 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6114.t1.start1Ggra6114.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 588939..588941 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6114.t1 ID=Ggra6114.t1|Name=Ggra6114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=702bp
MAVEKSSDPEHEEASQFEDNPDMLPTRTYVAPPRSGEGRSRSFRPSASSL
PACAWICIIFIPLLWLVGTVESSRPFYHIFFAFLSLLPAFIVGRFVLTQF
SDEAVSKSFLLSQFLLGAIPLSLMIVLVEMLLVVVFGVLLFSSDIQKYLD
SAPNVEAISRIGLYAMKRTVNSSFHSSDDPISKDADVDKLMEALGEQLPL
WKLLVGAAFFAVVVAGVTEEVGKWTLARRYRKVNSLQENVEWDRHIGCRG
ILAIACMGALGFATVENYGFVVGLTASPEATFQFGFVVMTLFRGLLAFPI
HVGAQFYVAVAAAQSYIFHEPISVVWPLSVAILIHALFDGLSMVMLVLIP
RLGAPSWTGVSVPILQSLLTVLLVLLCRGRRQQRPGRAITYEIQSCKAGN
PRQLGTSHTRRSDNLTLLTRRAPPPQTCGRFFKVSAENGVQVHSFDPAAF
DSDAETDGPPSDSFAWRREHSRIRTSLSLNSISSRLDTDSTLRRARRSFT
RPVTPTMAPFSRDRATSFYHGKSRLHHSVSNDDIIGAVNPQRLQQLLGED
YVLFCSSNVKTTQPPARQQRQNSNTNKHSRSMRSILFSSRRPGFNVSLVS
AGSFRAESDEERDVEQFSRMLAAERSNDDRPSCASIPLFVEEIGRVPRVA
VVDGRARRVRVRRLRGASYRMKTSQTQGSNVFSRCFGVCLHPSARAGVEE
E*
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spliced messenger RNA

>Ggra6114.t1 ID=Ggra6114.t1|Name=Ggra6114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2106bp|location=Sequence derived from alignment at tig00000045_pilon:585834..588941- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGTGGAGAAGAGCTCTGATCCGGAACACGAAGAGGCATCTCAGTT
CGAAGACAACCCGGATATGCTACCCACACGTACCTACGTAGCACCACCAC
GGAGCGGCGAGGGAAGGAGCCGGTCCTTTCGGCCGTCTGCGTCAAGTCTT
CCAGCATGTGCCTGGATATGCATAATTTTCATCCCTCTTCTCTGGCTGGT
GGGCACTGTTGAATCTTCTCGTCCGTTCTACCATATTTTCTTCGCCTTTC
TATCTCTCCTTCCGGCCTTCATAGTGGGTAGGTTTGTGCTCACTCAGTTT
TCCGATGAGGCCGTCAGCAAATCTTTTTTGCTCTCTCAGTTCTTGCTGGG
AGCCATACCACTAAGTTTGATGATCGTCTTGGTGGAAATGTTGCTAGTGG
TGGTCTTTGGCGTTCTCTTGTTTTCATCTGATATCCAGAAGTATCTGGAT
AGCGCTCCAAATGTAGAAGCTATTTCTCGAATCGGATTGTACGCGATGAA
AAGGACTGTGAATTCATCTTTCCATTCAAGCGACGATCCTATAAGCAAAG
ATGCCGATGTGGACAAACTGATGGAAGCGCTAGGGGAACAGCTTCCACTT
TGGAAATTATTGGTTGGTGCCGCTTTCTTTGCAGTCGTTGTCGCTGGTGT
AACTGAAGAAGTCGGTAAATGGACGCTTGCTAGGCGATATAGAAAAGTAA
ACTCGTTGCAGGAAAACGTAGAGTGGGACCGGCATATTGGTTGCAGAGGT
ATCCTTGCTATTGCATGTATGGGTGCTCTTGGTTTTGCTACTGTTGAAAA
CTATGGTTTCGTGGTGGGACTAACAGCATCGCCAGAAGCAACGTTTCAAT
TTGGATTTGTCGTCATGACTTTGTTCCGCGGCTTATTGGCGTTTCCAATT
CATGTGGGGGCGCAGTTTTATGTTGCTGTTGCTGCGGCTCAGTCATATAT
CTTTCATGAACCGATCAGTGTGGTTTGGCCTCTTAGCGTTGCCATTCTAA
TTCACGCTCTTTTTGATGGTTTATCTATGGTGATGCTCGTTCTCATACCG
AGGCTGGGAGCTCCCTCCTGGACAGGAGTGTCTGTTCCCATCTTGCAATC
CCTTCTGACGGTTTTGCTTGTCCTTCTATGCCGCGGGCGGCGCCAACAAA
GACCGGGGCGCGCTATTACGTATGAAATTCAAAGCTGTAAGGCTGGCAAC
CCTAGACAACTCGGCACTAGTCATACTCGCCGCAGCGACAATCTTACTCT
TCTAACTCGTCGCGCGCCGCCGCCGCAAACGTGCGGAAGATTCTTCAAAG
TGTCGGCTGAAAATGGTGTGCAGGTGCACAGCTTTGACCCGGCTGCGTTT
GACTCGGACGCAGAAACAGACGGCCCGCCCTCGGACTCGTTCGCATGGCG
ACGGGAACACTCGCGCATCAGAACAAGTTTGAGTCTCAACAGCATATCAT
CGCGGCTTGACACTGATTCGACGCTGCGCCGTGCACGGCGCTCGTTCACG
CGGCCGGTTACACCGACGATGGCTCCGTTTTCTAGAGATCGTGCCACAAG
TTTCTACCACGGAAAGTCACGCTTGCATCACAGTGTGTCCAATGATGACA
TAATTGGCGCCGTGAACCCGCAGCGCTTGCAGCAGCTGCTTGGCGAGGAC
TACGTGTTGTTCTGCTCGTCCAATGTCAAAACAACTCAGCCACCAGCGCG
GCAGCAAAGGCAAAACAGCAACACAAACAAGCACAGCCGCTCTATGCGAA
GCATACTGTTCAGTTCTAGGAGACCTGGATTCAACGTTTCGCTTGTGTCA
GCAGGCAGTTTTCGAGCAGAAAGTGATGAGGAGAGGGATGTGGAGCAGTT
CAGTCGCATGCTTGCGGCCGAACGCAGCAACGATGATCGCCCCAGCTGTG
CGTCAATTCCGTTGTTCGTGGAGGAAATTGGACGGGTTCCGCGGGTGGCG
GTGGTGGACGGAAGGGCTCGCAGGGTGCGCGTGCGGAGACTCAGGGGTGC
TTCATATCGCATGAAGACGTCGCAGACTCAAGGCAGCAACGTTTTCTCGC
GATGCTTTGGGGTGTGCTTGCACCCGTCAGCGCGTGCGGGAGTCGAGGAA
GAGTGA
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protein sequence of Ggra6114.t1

>Ggra6114.t1 ID=Ggra6114.t1|Name=Ggra6114.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=702bp
MAVEKSSDPEHEEASQFEDNPDMLPTRTYVAPPRSGEGRSRSFRPSASSL
PACAWICIIFIPLLWLVGTVESSRPFYHIFFAFLSLLPAFIVGRFVLTQF
SDEAVSKSFLLSQFLLGAIPLSLMIVLVEMLLVVVFGVLLFSSDIQKYLD
SAPNVEAISRIGLYAMKRTVNSSFHSSDDPISKDADVDKLMEALGEQLPL
WKLLVGAAFFAVVVAGVTEEVGKWTLARRYRKVNSLQENVEWDRHIGCRG
ILAIACMGALGFATVENYGFVVGLTASPEATFQFGFVVMTLFRGLLAFPI
HVGAQFYVAVAAAQSYIFHEPISVVWPLSVAILIHALFDGLSMVMLVLIP
RLGAPSWTGVSVPILQSLLTVLLVLLCRGRRQQRPGRAITYEIQSCKAGN
PRQLGTSHTRRSDNLTLLTRRAPPPQTCGRFFKVSAENGVQVHSFDPAAF
DSDAETDGPPSDSFAWRREHSRIRTSLSLNSISSRLDTDSTLRRARRSFT
RPVTPTMAPFSRDRATSFYHGKSRLHHSVSNDDIIGAVNPQRLQQLLGED
YVLFCSSNVKTTQPPARQQRQNSNTNKHSRSMRSILFSSRRPGFNVSLVS
AGSFRAESDEERDVEQFSRMLAAERSNDDRPSCASIPLFVEEIGRVPRVA
VVDGRARRVRVRRLRGASYRMKTSQTQGSNVFSRCFGVCLHPSARAGVEE
E*
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mRNA from alignment at tig00000045_pilon:585834..588941-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6114.t1 ID=Ggra6114.t1|Name=Ggra6114.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3108bp|location=Sequence derived from alignment at tig00000045_pilon:585834..588941- (Gracilaria gracilis GNS1m male)
ATGGCAGTGGAGAAGAGCTCTGATCCGGAACACGAAGAGGCATCTCAGTT
CGAAGACAACCCGGATATGCTACCCACACGTACCTACGTAGCACCACCAC
GGAGCGGCGAGGGAAGGAGCCGGTCCTTTCGGCCGTCTGCGTCAAGTCTT
CCAGCATGTGCCTGGATATGCATAATTTTCATCCCTCTTCTCTGGCTGGT
GGGCACTGTTGAATCTTCTCGTCCGTTCTACCATATTTTCTTCGCCTTTC
TATCTCTCCTTCCGGCCTTCATAGTGGGTAGGTTTGTGCTCACTCAGTTT
TCCGATGAGGCCGTCAGCAAATCTTTTTTGCTCTCTCAGTTCTTGCTGGG
AGCCATACCACTAAGTTTGATGATCGTCTTGGTGGAAATGTTGCTAGTGG
TGGTCTTTGGCGTTCTCTTGTTTTCATCTGATATCCAGAAGTATCTGGAT
AGCGCTCCAAATGTAGAAGCTATTTCTCGAATCGGATTGTACGCGATGAA
AAGGACTGTGAATTCATCTTTCCATTCAAGCGACGATCCTATAAGCAAAG
ATGCCGATGTGGACAAACTGATGGAAGCGCTAGGGGAACAGCTTCCACTT
TGGAAATTATTGGTTGGTGCCGCTTTCTTTGCAGTCGTTGTCGCTGGTGT
AACTGAAGAAGTCGGTAAATGGACGCTTGCTAGGCGATATAGAAAAGTAA
ACTCGTTGCAGGAAAACGTAGAGTGGGACCGGCATATTGGTTGCAGAGGT
ATCCTTGCTATTGCATGTATGGGTGCTCTTGGTTTTGCTACTGTTGAAAA
CTATGGTTTCGTGGTGGGACTAACAGCATCGCCAGAAGCAACGTTTCAAT
TTGGATTTGTCGTCATGACTTTGTTCCGCGGCTTATTGGCGTTTCCAATT
CATGTGGGGGCGCAGTTTTATGTTGCTGTTGCTGCGGCTCAGTCATATAT
CTTTCATGAACCGATCAGTGTGGTTTGGCCTCTTAGCGTTGCCATTCTAA
TTCACGCTCTTTTTGATGGTTTATCTATGGTGATGCTCGTTCTCATACCG
AGGCTGGGAGCTCCCTCCTGGACAGGAGTGTCTGTTCCCATCTTGCAATC
CCTTCTGACGGTTTTGCTTGTCCTTCTATGCCGCGGGCGGTACAAAGCGC
TATTAGAAAGGGAAAGAATGGTCCTCACGGCAGCAGACCCAGTTTGAGAA
CGCTTGTGTGGCTTGTGGGAACGTGTACATACATTGTATTGACAATGCTC
CAAGAGTACAGTATATTGCAATTATCTTCACTCTGGCCGAACTCAAGTTC
GTCCCTCTACTTACTAGTAACTTTCTGGATAACCGCTTTTCCTTTCTTAG
TTTGGGGTGAGCCAGTGATCATCTGAACGGTTTGCCTTGTTTTCATTCTA
CCAAGGGTAAAACTTTGCTGCTGTCATTCCAGGGCAATGACTTTCTCGTG
TGTTTGCTCTAGTCTCACAGCGCGACGTTTGCTTGTACTGGTACGTAGTC
ATATTCCAAGAAGTTCTTACGTTCTGTTCAAAGAAAATGACGAGAGAATG
GAGAGCTGTGCACCCTTTCGATTACAGTACTCACGTCATCAAATCAAAGG
TGCGCGTTTCACGGTGAACAACGATAGCTAAACTTAGCCCATGATTTTGA
TTCAATAGCACGCAAGTAGAAAAGAATCTGTACTGGAAAGTGCGATTGGA
TGCTTGAAGATGAGCGCTCTCGGTCCGATGACCCTTACCTGTTACTCAAA
GGTCCTTAATTTACGAAGTAAAGACGGGACAGAAAAGGTGAGAGCGACGA
TAATCCTCACGCCGTCTCGCGCGAGAAGACAACTGTACAAAAAAGAACCT
CGAGTCTGTGCCAGGAGTCAGGCCAGGCGAACTTCTCCGTCGCCTACCTT
CAAGCTTGCCGTACGCCTGTACCGTTCGTACCGTTGGTTGCAGACGCCGA
TCTACAAAGGACGCCTTTAGCGATACCGCAACGCTTCAACTTTACAACCA
ACAACCAAAGGCCGACCCTTGCCTTTGTGCAGACAACTATCATACACAGT
AGGCGCCAACAAAGACCGGGGCGCGCTATTACGTATGAAATTCAAAGCTG
TAAGGCTGGCAACCCTAGACAACTCGGCACTAGTCATACTGTACGCCAGA
ATCAGCCTTCGCCTCTTTCCCACATCCGGCCATCTTCGTCATGTCTATTC
TCACCGCGCACTTACGTTCACCGGAGCAGCGCCGCAGCGACAATCTTACT
CTTCTAACTCGTCGCGCGCCGCCGCCGCAAACGTGCGGAAGATTCTTCAA
AGTGTCGGCTGAAAATGGTGTGCAGGTGCACAGCTTTGACCCGGCTGCGT
TTGACTCGGACGCAGAAACAGACGGCCCGCCCTCGGACTCGTTCGCATGG
CGACGGGAACACTCGCGCATCAGAACAAGTTTGAGTCTCAACAGCATATC
ATCGCGGCTTGACACTGATTCGACGCTGCGCCGTGCACGGCGCTCGTTCA
CGCGGCCGGTTACACCGACGATGGCTCCGTTTTCTAGAGATCGTGCCACA
AGTTTCTACCACGGAAAGTCACGCTTGCATCACAGTGTGTCCAATGATGA
CATAATTGGCGCCGTGAACCCGCAGCGCTTGCAGCAGCTGCTTGGCGAGG
ACTACGTGTTGTTCTGCTCGTCCAATGTCAAAACAACTCAGCCACCAGCG
CGGCAGCAAAGGCAAAACAGCAACACAAACAAGCACAGCCGCTCTATGCG
AAGCATACTGTTCAGTTCTAGGAGACCTGGATTCAACGTTTCGCTTGTGT
CAGCAGGCAGTTTTCGAGCAGAAAGTGATGAGGAGAGGGATGTGGAGCAG
TTCAGTCGCATGCTTGCGGCCGAACGCAGCAACGATGATCGCCCCAGCTG
TGCGTCAATTCCGTTGTTCGTGGAGGAAATTGGACGGGTTCCGCGGGTGG
CGGTGGTGGACGGAAGGGCTCGCAGGGTGCGCGTGCGGAGACTCAGGGGT
GCTTCATATCGCATGAAGACGTCGCAGACTCAAGGCAGCAACGTTTTCTC
GCGATGCTTTGGGGTGTGCTTGCACCCGTCAGCGCGTGCGGGAGTCGAGG
AAGAGTGA
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Coding sequence (CDS) from alignment at tig00000045_pilon:585834..588941-

>Ggra6114.t1 ID=Ggra6114.t1|Name=Ggra6114.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2106bp|location=Sequence derived from alignment at tig00000045_pilon:585834..588941- (Gracilaria gracilis GNS1m male)
ATGGCAGTGGAGAAGAGCTCTGATCCGGAACACGAAGAGGCATCTCAGTT
CGAAGACAACCCGGATATGCTACCCACACGTACCTACGTAGCACCACCAC
GGAGCGGCGAGGGAAGGAGCCGGTCCTTTCGGCCGTCTGCGTCAAGTCTT
CCAGCATGTGCCTGGATATGCATAATTTTCATCCCTCTTCTCTGGCTGGT
GGGCACTGTTGAATCTTCTCGTCCGTTCTACCATATTTTCTTCGCCTTTC
TATCTCTCCTTCCGGCCTTCATAGTGGGTAGGTTTGTGCTCACTCAGTTT
TCCGATGAGGCCGTCAGCAAATCTTTTTTGCTCTCTCAGTTCTTGCTGGG
AGCCATACCACTAAGTTTGATGATCGTCTTGGTGGAAATGTTGCTAGTGG
TGGTCTTTGGCGTTCTCTTGTTTTCATCTGATATCCAGAAGTATCTGGAT
AGCGCTCCAAATGTAGAAGCTATTTCTCGAATCGGATTGTACGCGATGAA
AAGGACTGTGAATTCATCTTTCCATTCAAGCGACGATCCTATAAGCAAAG
ATGCCGATGTGGACAAACTGATGGAAGCGCTAGGGGAACAGCTTCCACTT
TGGAAATTATTGGTTGGTGCCGCTTTCTTTGCAGTCGTTGTCGCTGGTGT
AACTGAAGAAGTCGGTAAATGGACGCTTGCTAGGCGATATAGAAAAGTAA
ACTCGTTGCAGGAAAACGTAGAGTGGGACCGGCATATTGGTTGCAGAGGT
ATCCTTGCTATTGCATGTATGGGTGCTCTTGGTTTTGCTACTGTTGAAAA
CTATGGTTTCGTGGTGGGACTAACAGCATCGCCAGAAGCAACGTTTCAAT
TTGGATTTGTCGTCATGACTTTGTTCCGCGGCTTATTGGCGTTTCCAATT
CATGTGGGGGCGCAGTTTTATGTTGCTGTTGCTGCGGCTCAGTCATATAT
CTTTCATGAACCGATCAGTGTGGTTTGGCCTCTTAGCGTTGCCATTCTAA
TTCACGCTCTTTTTGATGGTTTATCTATGGTGATGCTCGTTCTCATACCG
AGGCTGGGAGCTCCCTCCTGGACAGGAGTGTCTGTTCCCATCTTGCAATC
CCTTCTGACGGTTTTGCTTGTCCTTCTATGCCGCGGGCGGCGCCAACAAA
GACCGGGGCGCGCTATTACGTATGAAATTCAAAGCTGTAAGGCTGGCAAC
CCTAGACAACTCGGCACTAGTCATACTCGCCGCAGCGACAATCTTACTCT
TCTAACTCGTCGCGCGCCGCCGCCGCAAACGTGCGGAAGATTCTTCAAAG
TGTCGGCTGAAAATGGTGTGCAGGTGCACAGCTTTGACCCGGCTGCGTTT
GACTCGGACGCAGAAACAGACGGCCCGCCCTCGGACTCGTTCGCATGGCG
ACGGGAACACTCGCGCATCAGAACAAGTTTGAGTCTCAACAGCATATCAT
CGCGGCTTGACACTGATTCGACGCTGCGCCGTGCACGGCGCTCGTTCACG
CGGCCGGTTACACCGACGATGGCTCCGTTTTCTAGAGATCGTGCCACAAG
TTTCTACCACGGAAAGTCACGCTTGCATCACAGTGTGTCCAATGATGACA
TAATTGGCGCCGTGAACCCGCAGCGCTTGCAGCAGCTGCTTGGCGAGGAC
TACGTGTTGTTCTGCTCGTCCAATGTCAAAACAACTCAGCCACCAGCGCG
GCAGCAAAGGCAAAACAGCAACACAAACAAGCACAGCCGCTCTATGCGAA
GCATACTGTTCAGTTCTAGGAGACCTGGATTCAACGTTTCGCTTGTGTCA
GCAGGCAGTTTTCGAGCAGAAAGTGATGAGGAGAGGGATGTGGAGCAGTT
CAGTCGCATGCTTGCGGCCGAACGCAGCAACGATGATCGCCCCAGCTGTG
CGTCAATTCCGTTGTTCGTGGAGGAAATTGGACGGGTTCCGCGGGTGGCG
GTGGTGGACGGAAGGGCTCGCAGGGTGCGCGTGCGGAGACTCAGGGGTGC
TTCATATCGCATGAAGACGTCGCAGACTCAAGGCAGCAACGTTTTCTCGC
GATGCTTTGGGGTGTGCTTGCACCCGTCAGCGCGTGCGGGAGTCGAGGAA
GAGTGA
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