Ggra6077.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6077.t1
Unique NameGgra6077.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length224
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:487731..488479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6077Ggra6077Gracilaria gracilis GNS1m malegenetig00000045_pilon 487731..488479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6077.t1Ggra6077.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 487731..488479 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6077.t1.start1Ggra6077.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 487731..487733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6077.t1.CDS1Ggra6077.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 487731..487952 +
Ggra6077.t1.CDS2Ggra6077.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000045_pilon 488030..488479 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6077.t1.exon1Ggra6077.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 487731..487952 +
Ggra6077.t1.exon2Ggra6077.t1.exon2Gracilaria gracilis GNS1m maleexontig00000045_pilon 488030..488479 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6077.t1.intron1Ggra6077.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000045_pilon 487953..488029 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6077.t1.stop1Ggra6077.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 488477..488479 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6077.t1 ID=Ggra6077.t1|Name=Ggra6077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=224bp
MASVLGVGAAFVSFVALVLAAVAIASNYWLTISLDGDAAASPLNPTTLDD
GLSDLTISYKLKHFGLWVGCHREINFEKRSCAYIGSSCYTNVCWVRNGVD
NTCNNFRLLPIDNCSAYQATRAMVVIGTIFLILGSSILVVSVCITSKSLS
TAGALFTFLASFFLMIGFAVFYDRTHNYLDDIASIGWSFVLLIVAWPLAF
VAAVIGLIASLQSSKQEEFDESG*
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spliced messenger RNA

>Ggra6077.t1 ID=Ggra6077.t1|Name=Ggra6077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=672bp|location=Sequence derived from alignment at tig00000045_pilon:487731..488479+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCAGTTCTGGGTGTTGGTGCCGCCTTCGTTAGCTTCGTGGCGCT
TGTGTTGGCTGCCGTTGCGATTGCCTCCAACTATTGGCTTACCATTTCGC
TTGATGGCGATGCCGCAGCCTCGCCGCTCAATCCCACCACATTGGATGAT
GGCTTGTCCGACCTTACCATCAGCTACAAACTGAAGCACTTCGGCCTCTG
GGTCGGCTGTCATCGAGAGATTAATTTTGAAAAGCGCTCGTGCGCGTACA
TCGGCTCTTCGTGCTACACAAATGTGTGTTGGGTTCGAAACGGAGTGGAT
AATACTTGCAACAACTTCCGTTTGCTTCCCATCGACAACTGCTCGGCGTA
TCAAGCTACTCGCGCAATGGTTGTCATCGGTACAATCTTTCTCATATTAG
GTTCTTCGATCCTTGTCGTTTCCGTGTGCATCACATCAAAGAGTCTGTCA
ACTGCGGGAGCCTTGTTCACCTTTTTGGCCTCCTTCTTTCTCATGATTGG
TTTTGCCGTCTTCTACGATCGTACTCACAACTATCTGGATGACATTGCCT
CCATCGGTTGGTCCTTTGTCCTTCTCATCGTCGCATGGCCGCTGGCATTT
GTAGCCGCGGTCATTGGGTTGATAGCCTCCTTGCAAAGTTCAAAACAAGA
GGAATTTGACGAATCTGGGTAA
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protein sequence of Ggra6077.t1

>Ggra6077.t1 ID=Ggra6077.t1|Name=Ggra6077.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=224bp
MASVLGVGAAFVSFVALVLAAVAIASNYWLTISLDGDAAASPLNPTTLDD
GLSDLTISYKLKHFGLWVGCHREINFEKRSCAYIGSSCYTNVCWVRNGVD
NTCNNFRLLPIDNCSAYQATRAMVVIGTIFLILGSSILVVSVCITSKSLS
TAGALFTFLASFFLMIGFAVFYDRTHNYLDDIASIGWSFVLLIVAWPLAF
VAAVIGLIASLQSSKQEEFDESG*
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mRNA from alignment at tig00000045_pilon:487731..488479+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6077.t1 ID=Ggra6077.t1|Name=Ggra6077.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=749bp|location=Sequence derived from alignment at tig00000045_pilon:487731..488479+ (Gracilaria gracilis GNS1m male)
ATGGCCTCAGTTCTGGGTGTTGGTGCCGCCTTCGTTAGCTTCGTGGCGCT
TGTGTTGGCTGCCGTTGCGATTGCCTCCAACTATTGGCTTACCATTTCGC
TTGATGGCGATGCCGCAGCCTCGCCGCTCAATCCCACCACATTGGATGAT
GGCTTGTCCGACCTTACCATCAGCTACAAACTGAAGCACTTCGGCCTCTG
GGTCGGCTGTCATCGAGAGATTGTAAGTTTGTGCTCCTTCTCTTCCTTTT
AGCTCGTGCTCATTTTCTCACATCTTGTTGTCGTCGTCACGATTCGTAGA
ATTTTGAAAAGCGCTCGTGCGCGTACATCGGCTCTTCGTGCTACACAAAT
GTGTGTTGGGTTCGAAACGGAGTGGATAATACTTGCAACAACTTCCGTTT
GCTTCCCATCGACAACTGCTCGGCGTATCAAGCTACTCGCGCAATGGTTG
TCATCGGTACAATCTTTCTCATATTAGGTTCTTCGATCCTTGTCGTTTCC
GTGTGCATCACATCAAAGAGTCTGTCAACTGCGGGAGCCTTGTTCACCTT
TTTGGCCTCCTTCTTTCTCATGATTGGTTTTGCCGTCTTCTACGATCGTA
CTCACAACTATCTGGATGACATTGCCTCCATCGGTTGGTCCTTTGTCCTT
CTCATCGTCGCATGGCCGCTGGCATTTGTAGCCGCGGTCATTGGGTTGAT
AGCCTCCTTGCAAAGTTCAAAACAAGAGGAATTTGACGAATCTGGGTAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:487731..488479+

>Ggra6077.t1 ID=Ggra6077.t1|Name=Ggra6077.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=672bp|location=Sequence derived from alignment at tig00000045_pilon:487731..488479+ (Gracilaria gracilis GNS1m male)
ATGGCCTCAGTTCTGGGTGTTGGTGCCGCCTTCGTTAGCTTCGTGGCGCT
TGTGTTGGCTGCCGTTGCGATTGCCTCCAACTATTGGCTTACCATTTCGC
TTGATGGCGATGCCGCAGCCTCGCCGCTCAATCCCACCACATTGGATGAT
GGCTTGTCCGACCTTACCATCAGCTACAAACTGAAGCACTTCGGCCTCTG
GGTCGGCTGTCATCGAGAGATTAATTTTGAAAAGCGCTCGTGCGCGTACA
TCGGCTCTTCGTGCTACACAAATGTGTGTTGGGTTCGAAACGGAGTGGAT
AATACTTGCAACAACTTCCGTTTGCTTCCCATCGACAACTGCTCGGCGTA
TCAAGCTACTCGCGCAATGGTTGTCATCGGTACAATCTTTCTCATATTAG
GTTCTTCGATCCTTGTCGTTTCCGTGTGCATCACATCAAAGAGTCTGTCA
ACTGCGGGAGCCTTGTTCACCTTTTTGGCCTCCTTCTTTCTCATGATTGG
TTTTGCCGTCTTCTACGATCGTACTCACAACTATCTGGATGACATTGCCT
CCATCGGTTGGTCCTTTGTCCTTCTCATCGTCGCATGGCCGCTGGCATTT
GTAGCCGCGGTCATTGGGTTGATAGCCTCCTTGCAAAGTTCAAAACAAGA
GGAATTTGACGAATCTGGGTAA
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