Ggra6077.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6077.t1
Unique NameGgra6077.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length224
Homology
BLAST of Ggra6077.t1 vs. uniprot
Match: A0A2V3J350 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J350_9FLOR)

HSP 1 Score: 271 bits (692), Expect = 3.450e-89
Identity = 146/223 (65.47%), Postives = 175/223 (78.48%), Query Frame = 0
Query:    1 MASVLGVGAAFVSFVALVLAAVAIASNYWLTISLDGDAAASPLNPTTLDDGLSD--LTISYKLKHFGLWVGCHREINFEKRSCAYIGSSCYTNVCWVRNGVDNTCNNFRLLPIDNCSAYQATRAMVVIGTIFLILGSSILVVSVCITSKSLSTAGALFTFLASFFLMIGFAVFYDRTHNYLDDIASIGWSFVLLIVAWPLAFVAAVIGLIASLQSSKQEEFDE 221
            M+ +  V AAF+SFV+LVL AV+IA+NYW+ +S D     SPLNP   +D  SD  L + Y L +FGLWVGCHRE+ F K SCAYIG+SCY++VCWVRNG    C+NFRL  IDNCSAYQATRAM +IGTIFL+LGSSILVVSV ++S SLS AG + T LAS FLMI FAVFYDR  NYLDDI SIGWSF+LLIVAWPLAFVA ++G+ ASLQS K++E+ +
Sbjct:    1 MSKLFSVLAAFLSFVSLVLVAVSIATNYWVKLSPDTQPQ-SPLNPLA-NDTFSDPTLLVQYNLDYFGLWVGCHREVTFNKVSCAYIGASCYSDVCWVRNGRQEKCSNFRLPQIDNCSAYQATRAMAIIGTIFLVLGSSILVVSVWVSSNSLSIAGTISTLLASVFLMIAFAVFYDRNFNYLDDIGSIGWSFILLIVAWPLAFVAFLLGIPASLQSEKRDEYSQ 221          
BLAST of Ggra6077.t1 vs. uniprot
Match: A0A1X6P4S8 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4S8_PORUM)

HSP 1 Score: 191 bits (486), Expect = 7.990e-58
Identity = 101/212 (47.64%), Postives = 145/212 (68.40%), Query Frame = 0
Query:    9 AAFVSFVALVLAAVAIASNYWLTISLDGDAA--ASPLNPTTLDDGLSDLTISYKLKHFGLWVGCHREINFEKR-SCAYIGSSCYTNVCWVRNGVDNTCNNFRLLPIDNCSAYQATRAMVVIGTIFLILGSSILVVSVCITSKSLSTAGALFTFLASFFLMIGFAVFYDRTHNY--LDDIASIGWSFVLLIVAWPLAFVAAVIGLIASLQSSK 215
            AA +SF+ALVL AV +++N+W+ +      +  A+ LNP   +  L +L ++Y + H+GLWVGCH E NF    SCAYIG+SCY++VCW+RN  D TC + R+  + NC+AYQATRA++ IGT+ LI+GSS+L V+ C+ S++LS  G L TF A   LM  FAVFY R ++   +D  AS+GWSF+L+I  WP+A VA+++G  +S    K
Sbjct:    9 AALLSFIALVLTAVGLSTNHWIDVDSPRSTSDLAARLNPVVTNAELDNLRVNYDVSHYGLWVGCHLERNFGGEVSCAYIGASCYSDVCWIRNRRDKTCLDRRVRLLTNCAAYQATRALICIGTMVLIVGSSLLFVATCVLSRNLSLLGGLHTFFAGVCLMTAFAVFYAREYSGPGVDGFASLGWSFILVIAGWPIAIVASLLGCASSTAQGK 220          
BLAST of Ggra6077.t1 vs. uniprot
Match: A0A1X6NK28 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NK28_PORUM)

HSP 1 Score: 180 bits (456), Expect = 3.550e-53
Identity = 95/216 (43.98%), Postives = 148/216 (68.52%), Query Frame = 0
Query:   10 AFVSFVALVLAAVAIASNYWLTISLDGDAAASP--LNPTTLDDGLSDLTISYKLKHFGLWVGCHREINF-EKRSCAYIGSSCYTNVCWVRNGVDNTCNNFRLLPID-NCSAYQATRAMVVIGTIFLILGSSILVVSVCITSKSLSTAGALFTFLASFFLMIGFAVFYDRTHNYLD---DIASIGWSFVLLIVAWPLAFVAAVIGLIASLQSSKQEE 218
            A +S +ALVLAAV +A+N+W+ ++     A S    NP   +  L  LT+SY + H+GLWVGCH E +F E+RSCAYIG+ CY++VCW+RN  D TC + ++  +D +C++YQ TR +V +G I L++G+S+LVV+ C+TS  ++ +G+  T L+S  L I F VFY + +  +D   D A +GWSFVLLI++WP+A VAA++G + ++    +++
Sbjct:   10 AILSIIALVLAAVGMATNHWIDVTEPRSTATSAREANPVVTNTKLPGLTVSYNVHHYGLWVGCHVERSFGEQRSCAYIGNRCYSDVCWIRNDRDTTCLDAKVTLVDQSCTSYQFTRVLVCLGMILLVMGTSLLVVASCVTSGRVAASGSGLTLLSSLLLCIAFVVFYVKEYAGVDGASDWAKLGWSFVLLIISWPVAAVAAIVGALGAVMVRDKDD 225          
BLAST of Ggra6077.t1 vs. uniprot
Match: R7QDP2 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDP2_CHOCR)

HSP 1 Score: 129 bits (324), Expect = 2.090e-33
Identity = 79/225 (35.11%), Postives = 122/225 (54.22%), Query Frame = 0
Query:   13 SFVALVLAAVAIASNYWLTISLDGDAAASPLNPTTLDDGL-----------SDLTISYKLKHFGLWVGCHREINFEKRSCAYIGSSCYTNVCWVRN---GVDNTCNNFRLLPIDNCSAYQATRAMVVIGTIFLILGSSILVVSVCITSKSLSTAGALFTFLASFFLMIGFAVFYDR--THNYLDDIASIGWSFVLLIVAWPLAFVAAVIGLIASLQSSKQEEFDE 221
            S V+LVL AV  A+N W+ +    D   + LNPTT++  L           S   I+Y + H+GLW+GCH E +    SC+YIGS C++NVCW+R        TC + R+  + NC+AYQ  RA V +G + +I G +  +VS+   ++SL+    L  FLA  F+M+ FA+FY      + L  +  IG+S  L+  AWPL  +  ++   A+    + +E  +
Sbjct:   13 SIVSLVLLAVGAATNKWVVM----DKTNTELNPTTVNSKLGIQDKQVGVTSSTSDITYSVSHYGLWIGCHVE-HKGAVSCSYIGSRCFSNVCWIRKTSRSRTKTCLDTRVSSVPNCTAYQVIRAFVTLGALAMICGVATQLVSLLTVNRSLAMLAGLIIFLAGLFVMVAFAIFYSEEVAKSGLRGVGHIGYSLKLITAAWPLMLLCGLLSCFAASMGLRHKEISD 232          
BLAST of Ggra6077.t1 vs. uniprot
Match: A0A1X6NX97 (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NX97_PORUM)

HSP 1 Score: 107 bits (267), Expect = 5.110e-25
Identity = 79/228 (34.65%), Postives = 124/228 (54.39%), Query Frame = 0
Query:    4 VLGVGAAFVSFVALVLAAVAIASNYWLTISL-DGDAAASPLNPTTLDDGLSDLTISYKLKHFGLWVGCHREINFEKRSCAYIGSSCYTNVCWVR----NGVDNTCNNFRLLPI-DNCSAYQATRAMVVIGTIFLILGSSILVVSVCITSKSLSTAGALFTFLASFFLMIGFAVFYDRTHNYL-----DDIASIGWSFVLLIVAWPLAFVAAVIGLIASLQSSKQEEFD 220
            VLGV  A +S VALVLA+  +A+N+W+ +   DG      +NP  ++  ++  T+ Y  ++ GLW GC+RE +    SCAYI   C TNVCW R      +D  C    L PI  +C+A+Q +R    IG   L++ ++ L  +  +T++  +  G L + L +  +++  +VFY            D +ASIG+SF L++ A PLA +AAV G  A+      +E+D
Sbjct:    5 VLGVATA-LSLVALVLASFGVATNHWVRLHRPDGK-----MNPVEVNQQMAFTTVKYPARYLGLWYGCYRE-DGSAVSCAYITHRCTTNVCWKRMLRATVMDTVCQRNALGPIVPHCAAFQVSRITACIGLFLLVVAATCLASAFVVTNRGFAAVGGLASALGALAIVVATSVFYAHQMGAAAGLGADGLASIGYSFWLVMAAAPLALLAAVGGCAAASVFIGAKEYD 225          
The following BLAST results are available for this feature:
BLAST of Ggra6077.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3J3503.450e-8965.47Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6P4S87.990e-5847.64Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1X6NK283.550e-5343.98Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
R7QDP22.090e-3335.11Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NX975.110e-2534.65Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004031PMP-22/EMP/MP20/Claudin superfamilyPFAMPF13903Claudin_2coord: 15..205
e-value: 3.1E-11
score: 43.4
NoneNo IPR availableGENE3D1.20.140.150coord: 7..222
e-value: 1.4E-25
score: 92.0
NoneNo IPR availablePANTHERPTHR10671EPITHELIAL MEMBRANE PROTEIN-RELATEDcoord: 3..218
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 146..151
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..121
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 173..183
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 184..209
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..172
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 210..223
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 122..145
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 186..208
NoneNo IPR availableTMHMMTMhelixcoord: 122..144
NoneNo IPR availableTMHMMTMhelixcoord: 149..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:487731..488479 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6077.t1Ggra6077.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 487731..488479 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6077.t1 ID=Ggra6077.t1|Name=Ggra6077.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=224bp
MASVLGVGAAFVSFVALVLAAVAIASNYWLTISLDGDAAASPLNPTTLDD
GLSDLTISYKLKHFGLWVGCHREINFEKRSCAYIGSSCYTNVCWVRNGVD
NTCNNFRLLPIDNCSAYQATRAMVVIGTIFLILGSSILVVSVCITSKSLS
TAGALFTFLASFFLMIGFAVFYDRTHNYLDDIASIGWSFVLLIVAWPLAF
VAAVIGLIASLQSSKQEEFDESG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004031PMP22/EMP/MP20/Claudin