Ggra6083.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6083.t1
Unique NameGgra6083.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length667
Homology
BLAST of Ggra6083.t1 vs. uniprot
Match: A0A2V3J361 (PDZ and LIM domain protein 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J361_9FLOR)

HSP 1 Score: 501 bits (1289), Expect = 1.010e-165
Identity = 326/746 (43.70%), Postives = 422/746 (56.57%), Query Frame = 0
Query:    1 MALFERPNVFQFNALLRLGFTARLRSETADIFVAHKSKTLARADARENAADFYFVSGDNTSALKPIQAVVLSQRAEEHTERFLTLGELPALTETPTLLKLQLKDASSSHRMLFSLSSVAKPQKFLSMRGAKRDQTLQLRNRCTKWELFHLEIIPGSIGTGLRDSPNPFVRSFRTVPGAFTQVLLLLGVRFRLRSVHSRILHRDVAQEGETSVLQTGASSDIYSSRDCDLVFVANKCPSDGTGLNSTCFY---LNEVNTDRYLAIGKSDKNALSAKLLNEKSPVVVNTTGALGLVNLGFLEHEEFDSAQWLMAGPRGQLEMRKHRRAWETFTLEYVQQSYTAALERVSIPPLYSRAEETTRETLRAEITAKIAKAKGDVKVTQETQSGSPSIGFDHSAALAGLADEPKKVTTPASSKSKQSKVNTSSAAQKRGPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALPRNKANRKAAKKXXXXXXXXXAKASASRTNGKPGPSSTVHGPVNDVTPAV-QTEKDKKAXXXXXXXXXXXXXSASGAVSGESSSAHAATPHAQGPKCSACGLPTAGTVTKAMGKEFHPQCFCC----------------------------------------------------------------------------DKPNEPRCSRCVTGEENA-SGRRGSSRMVNLPGFGPAKPNAPHLPTALGNINNRGSSGQPGRARLMTPVWP 665
            MALFERP+V QFNALLRLGF ARLR+E AD+FV  +S +L+R   R + + F+FVSGD TS  KPIQA VLSQR+++ +  FLTLG+ P L  TP LLK+Q+ + ++  R+LFS+SS+ KP+K++SM G +  Q ++LR+ C+KWELFHLEIIPG+IG GL+++      S+ TVP A +Q LLLLGVR RLRSVHSR+LHR  + +   ++ QTGA S   SSRD DL+F  ++  S      +  F    L E ++ RY AI  +  +   AKL++E++ +++  + + G  ++G  E ++ D+AQWLMAGPRG+LE+R  R AWETFT+E+VQQSY  AL   S P LY+ AEETTR  LR+EI AK+A  KG+ K        +PS GF+H+AAL+GL+D P  +      K+K S    + ++++R    XXXXXXXXXXXXXXX                      +S+LPRNKANRKA             K       GKP   +   G V    PAV Q EK+  A                  VS      H   P A GPKC+ACGLPT+G+ TKAMGK+FHPQCFCC                                                                            +KPNEPRCSRCVTGEE    GR  SSRMVNLPGFGP K   P +P A       G++GQPGRARL+TPVWP
Sbjct:    1 MALFERPSVSQFNALLRLGFAARLRAEPADMFVKQQSDSLSRTTKRGDGSLFFFVSGDETSVEKPIQAAVLSQRSDDESHTFLTLGKTPTLESTPNLLKVQMNNIANPRRLLFSISSINKPRKYISMHGVQDGQNVRLRDVCSKWELFHLEIIPGTIGKGLKNAQTS-TGSYLTVPQAISQALLLLGVRIRLRSVHSRVLHRAESDDSVATIFQTGAKSSTQSSRDSDLIFTGSQLESAKNVPPTGGFMPISLKEASSGRYFAITTTAVDGSCAKLVDEETKLLLCMSNSPGRFHIGVAEDKQLDNAQWLMAGPRGRLELRSGRGAWETFTIEFVQQSYNVALANFSTPQLYTLAEETTRTALRSEIAAKVAVVKGE-KPNSRAVKKTPS-GFNHAAALSGLSDVPAPLN-----KTKTSNELEAKSSEQRSSVSXXXXXXXXXXXXXXXKVAAAAA---------------ASSLPRNKANRKA-------------KXXXXXQKGKPT-RAPAQGQVQTRQPAVNQPEKETSAPAVKENSEPEKKVDEKQKVSSSRPEDH--VPTANGPKCAACGLPTSGSYTKAMGKDFHPQCFCCGICRRPMSVGAGQFRERGGIPYCHTCYANHLASKCARCSKPIMDTVITAMDKTWHQDCLTCSICRLPLTQTFWLYANKPNEPRCSRCVTGEETVRGGRHSSSRMVNLPGFGPPKQRNPQVPLAPIGNGTHGNAGQPGRARLITPVWP 707          
BLAST of Ggra6083.t1 vs. uniprot
Match: R7QUT7 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QUT7_CHOCR)

HSP 1 Score: 226 bits (576), Expect = 2.960e-61
Identity = 252/708 (35.59%), Postives = 325/708 (45.90%), Query Frame = 0
Query:   70 VLSQRAEEHTERFLTL-GELPALTETPTLLKLQLKDASSS-HRMLFSLSSVAKPQKFLSMRGAKRDQTLQLRNRCTKWELFHLEIIPGSIGTGLRDSPNPFVRSFRTVPGAFTQVLLLLGVRFRLRSVHSRILHRDVAQEGETSVLQTGASSDIYSSRDCDLVFVANKCPSDGTGLNS---TCFYLNEVNTDRYLAIGKSDKNALSAKLL-----------NEKSPVVVNTTGALGLVNLGFLEHEEFDSA------QWLMAGPRGQLEMRKHRRAWETFTLEYVQQSYTAALERVSIPPLYSRAEETTRETLRAEITAKIAKAKGDVKVTQETQSGSPSIG-FDHSAALAGLADEPKKVTTPASSKSKQSKVNTSSAAQ-----------KRGPAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSALPRNKANRKAAKKXXXXXXXXXAKASASRTNGKPGPSSTVHGPVNDVTPAVQTEKDKKAXXXXXXXXXXXXXSASGAVSGESSSAHAATPHAQGPKCSACGLPTAGTVTKAMGKEFHPQCFCC----------------------------------------------------------------------------DKPNEPRCSRCVTGEENASGR-RGSSRMVNLPGFGPAKPNAPHLPTALGNIN-NRGSSGQPGRARLMTPVWP 665
            VL++  +     FL L G  P LT+ P +LK+ +   + +  R L SL        FLS+ G K     +L+N  +K ELFHLEI+PG++G G  + P        T   A +  +L LGVRFRLRS HSR+L R    +   +V+Q G  + I  + + +L+F   +     +G N      F + +V + + L++ KS+     AK L           N  SP+ V +    G + LG ++    D A      +WLMAGP+G+LE+R +R +WE+FT+E+V+QS+  A+  +   PLY+ A ETTR  +R+EI A++ K +     T    S     G  D+SAALAGLA+ PK    P   KS+ S   TS +A            K  PA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  A    K  + AA                         S    G    V  +  T+K   A      XXXXXXX                     GP C+ACG    GT T A+GK FHP CFCC                                                                            DKPNEPRCSRCVTG E  +GR   S RMVNLP FG  + N P LP  +GN     GSS   GRARLM PV P
Sbjct:    5 VLARPPKSSETSFLALSGTTPRLTDNPGVLKVCIPFGTENPQRTLISLQRPGPGGAFLSLSGGK--DRARLKNVVSKRELFHLEIVPGTLGKGFVNGPFDHNLPRLTSVEALSHAVLELGVRFRLRSAHSRVLRRGDGDQNFVAVVQNGPKTSIQETHEKELLFSGFRVDGAVSGSNGHMRALFVIKDVESGKVLSVSKSNIAQSRAKTLCESAAALIPEGNAVSPLCVQSRQVWGGIYLGNVKMRGGDEAGAVQVDEWLMAGPKGRLEVRTNRSSWESFTIEFVRQSFAMAINELPESPLYAIASETTRSNIRSEIAARVGKEEPKAASTLGASSKKKKTGGMDYSAALAGLAEPPK---VPVVQKSEGSAAKTSKSASXXXXXXXXXXXKGQPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAHAKGVQAAA-------------------------SGATAGGSKSVDASNTTDKSPDAGKSTVPXXXXXXXXX-----------XXXXXXGSGPPCAACGRMVEGTYTTALGKNFHPHCFCCGKCRRPMGAGAGQFRERGGIPYCQACYAAHLASRCARCSEPIMDTVITAMEKTWHKACLTCTICRLPLTQTFWLYADKPNEPRCSRCVTGSEEYNGRGNASGRMVNLPMFG--RNNRPSLP--VGNPTAGAGSSAAGGRARLMNPVLP 667          
The following BLAST results are available for this feature:
BLAST of Ggra6083.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J3611.010e-16543.70PDZ and LIM domain protein 7 n=1 Tax=Gracilariopsi... [more]
R7QUT72.960e-6135.59Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 475..495
NoneNo IPR availableGENE3D2.10.110.10Cysteine Rich Proteincoord: 553..619
e-value: 1.3E-7
score: 33.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 496..518
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 523..546
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 468..581
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 478..495
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 407..427
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 640..654
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 617..666
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 377..439
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 565..593

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:504904..507132 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6083.t1Ggra6083.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 504904..507132 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6083.t1 ID=Ggra6083.t1|Name=Ggra6083.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=667bp
MALFERPNVFQFNALLRLGFTARLRSETADIFVAHKSKTLARADARENAA
DFYFVSGDNTSALKPIQAVVLSQRAEEHTERFLTLGELPALTETPTLLKL
QLKDASSSHRMLFSLSSVAKPQKFLSMRGAKRDQTLQLRNRCTKWELFHL
EIIPGSIGTGLRDSPNPFVRSFRTVPGAFTQVLLLLGVRFRLRSVHSRIL
HRDVAQEGETSVLQTGASSDIYSSRDCDLVFVANKCPSDGTGLNSTCFYL
NEVNTDRYLAIGKSDKNALSAKLLNEKSPVVVNTTGALGLVNLGFLEHEE
FDSAQWLMAGPRGQLEMRKHRRAWETFTLEYVQQSYTAALERVSIPPLYS
RAEETTRETLRAEITAKIAKAKGDVKVTQETQSGSPSIGFDHSAALAGLA
DEPKKVTTPASSKSKQSKVNTSSAAQKRGPAGKKASTAASKAGSAASKAA
SSTSKVSSSASKAATAASVSSALPRNKANRKAAKKNKRRQKAKQAKASAS
RTNGKPGPSSTVHGPVNDVTPAVQTEKDKKAEKDKKAEKDKKAESASGAV
SGESSSAHAATPHAQGPKCSACGLPTAGTVTKAMGKEFHPQCFCCDKPNE
PRCSRCVTGEENASGRRGSSRMVNLPGFGPAKPNAPHLPTALGNINNRGS
SGQPGRARLMTPVWPK*
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