Ggra6083.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra6083.t1
Unique Name	Ggra6083.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	667

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000045_pilon	contig	tig00000045_pilon:504904..507132 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra6083	Ggra6083	Gracilaria gracilis GNS1m male	gene	tig00000045_pilon 504904..507132 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6083.t1	Ggra6083.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000045_pilon 504904..507132 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6083.t1.start1	Ggra6083.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000045_pilon 504904..504906 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6083.t1.CDS1	Ggra6083.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 504904..506689 +
Ggra6083.t1.CDS2	Ggra6083.t1.CDS2	Gracilaria gracilis GNS1m male	CDS	tig00000045_pilon 506918..507132 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6083.t1.exon1	Ggra6083.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 504904..506689 +
Ggra6083.t1.exon2	Ggra6083.t1.exon2	Gracilaria gracilis GNS1m male	exon	tig00000045_pilon 506918..507132 +

The following intron feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6083.t1.intron1	Ggra6083.t1.intron1	Gracilaria gracilis GNS1m male	intron	tig00000045_pilon 506690..506917 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra6083.t1.stop1	Ggra6083.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000045_pilon 507130..507132 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000045_pilon:504904..507132+
coding sequence from alignment at tig00000045_pilon:504904..507132+

mRNA sequence

>Ggra6083.t1 ID=Ggra6083.t1|Name=Ggra6083.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=667bp
MALFERPNVFQFNALLRLGFTARLRSETADIFVAHKSKTLARADARENAA
DFYFVSGDNTSALKPIQAVVLSQRAEEHTERFLTLGELPALTETPTLLKL
QLKDASSSHRMLFSLSSVAKPQKFLSMRGAKRDQTLQLRNRCTKWELFHL
EIIPGSIGTGLRDSPNPFVRSFRTVPGAFTQVLLLLGVRFRLRSVHSRIL
HRDVAQEGETSVLQTGASSDIYSSRDCDLVFVANKCPSDGTGLNSTCFYL
NEVNTDRYLAIGKSDKNALSAKLLNEKSPVVVNTTGALGLVNLGFLEHEE
FDSAQWLMAGPRGQLEMRKHRRAWETFTLEYVQQSYTAALERVSIPPLYS
RAEETTRETLRAEITAKIAKAKGDVKVTQETQSGSPSIGFDHSAALAGLA
DEPKKVTTPASSKSKQSKVNTSSAAQKRGPAGKKASTAASKAGSAASKAA
SSTSKVSSSASKAATAASVSSALPRNKANRKAAKKNKRRQKAKQAKASAS
RTNGKPGPSSTVHGPVNDVTPAVQTEKDKKAEKDKKAEKDKKAESASGAV
SGESSSAHAATPHAQGPKCSACGLPTAGTVTKAMGKEFHPQCFCCDKPNE
PRCSRCVTGEENASGRRGSSRMVNLPGFGPAKPNAPHLPTALGNINNRGS
SGQPGRARLMTPVWPK*

spliced messenger RNA

>Ggra6083.t1 ID=Ggra6083.t1|Name=Ggra6083.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2001bp|location=Sequence derived from alignment at tig00000045_pilon:504904..507132+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTGTTTGAGCGACCCAACGTGTTTCAGTTCAACGCCCTGTTACG
TCTCGGGTTTACGGCCCGCCTTCGTTCCGAAACCGCCGACATCTTTGTCG
CGCACAAGTCCAAAACGCTCGCCCGAGCTGACGCGCGTGAAAATGCAGCC
GACTTCTACTTTGTGTCTGGCGACAACACCTCCGCTCTCAAACCAATTCA
GGCGGTGGTGTTGTCGCAACGTGCAGAAGAACACACAGAAAGGTTTCTCA
CACTTGGAGAACTTCCCGCCCTCACAGAAACCCCAACACTTCTCAAGCTG
CAGTTGAAAGATGCCTCCAGTTCGCATCGCATGCTTTTCTCACTGAGTTC
TGTCGCCAAGCCGCAGAAGTTTCTCAGTATGCGTGGTGCCAAACGCGACC
AAACGCTGCAGTTGCGCAACCGGTGTACCAAGTGGGAGTTGTTTCACTTA
GAAATCATACCGGGCTCCATTGGCACCGGGTTGAGGGACTCACCTAATCC
GTTTGTACGGTCATTCCGTACGGTTCCGGGGGCCTTTACACAAGTATTAT
TGTTGCTTGGCGTTCGCTTCAGACTCCGTTCTGTTCATTCACGAATTCTC
CACCGAGATGTTGCGCAAGAAGGAGAAACCTCGGTGCTTCAAACTGGTGC
GAGTAGCGATATCTATTCCAGCCGCGACTGTGACTTGGTTTTTGTTGCCA
ACAAATGCCCATCAGATGGAACGGGTCTGAATTCGACGTGTTTCTATCTG
AACGAAGTGAACACAGACCGCTACCTTGCGATCGGCAAGTCGGATAAAAA
CGCTTTGTCTGCGAAACTGCTCAATGAGAAGTCTCCGGTTGTTGTGAACA
CGACAGGTGCGCTGGGGCTTGTAAATCTTGGCTTTCTCGAACACGAGGAG
TTTGACTCTGCTCAATGGCTTATGGCAGGTCCACGAGGTCAACTGGAAAT
GCGCAAGCACAGGAGAGCTTGGGAAACGTTCACACTTGAATACGTACAAC
AATCGTATACTGCTGCACTTGAACGTGTATCAATTCCGCCACTGTATAGC
CGTGCTGAAGAAACAACACGCGAAACCTTGAGAGCTGAGATCACCGCAAA
AATTGCCAAGGCCAAAGGGGATGTTAAAGTAACGCAGGAGACGCAATCAG
GGAGCCCTTCGATCGGTTTCGACCACTCAGCGGCACTCGCAGGCCTTGCA
GATGAACCAAAGAAAGTCACTACCCCAGCTTCGAGCAAAAGCAAGCAGAG
TAAAGTGAATACGTCGTCTGCTGCACAAAAACGAGGCCCAGCTGGGAAGA
AGGCTAGCACTGCAGCTTCGAAGGCCGGCTCCGCAGCTTCGAAGGCTGCC
TCCTCAACTTCGAAGGTCTCCTCCTCAGCTTCGAAGGCCGCTACCGCAGC
TTCCGTGTCCTCAGCGTTGCCAAGGAACAAAGCAAATCGAAAAGCGGCTA
AGAAGAACAAGAGGAGACAGAAGGCAAAGCAAGCCAAGGCTTCGGCCTCT
CGAACTAACGGGAAGCCTGGTCCTTCATCTACCGTGCACGGACCTGTAAA
TGATGTGACACCTGCGGTGCAAACGGAGAAGGATAAGAAAGCTGAGAAGG
ACAAGAAAGCTGAGAAGGATAAGAAAGCTGAGAGTGCATCGGGTGCCGTG
TCAGGAGAATCATCTTCTGCCCATGCAGCGACTCCCCACGCACAGGGACC
AAAATGTTCTGCGTGTGGGCTCCCGACAGCAGGCACGGTCACAAAAGCAA
TGGGAAAGGAGTTTCATCCTCAATGCTTCTGCTGTGACAAGCCTAATGAA
CCAAGGTGCAGCAGATGTGTTACAGGCGAAGAAAACGCATCTGGGAGGCG
CGGTTCTTCGCGAATGGTGAATCTACCGGGCTTTGGTCCTGCGAAACCCA
ACGCCCCACACCTTCCAACAGCGCTCGGGAATATCAATAACCGAGGAAGT
TCTGGACAACCGGGACGTGCCAGACTGATGACCCCCGTGTGGCCAAAGTA
A

protein sequence of Ggra6083.t1

>Ggra6083.t1 ID=Ggra6083.t1|Name=Ggra6083.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=667bp
MALFERPNVFQFNALLRLGFTARLRSETADIFVAHKSKTLARADARENAA
DFYFVSGDNTSALKPIQAVVLSQRAEEHTERFLTLGELPALTETPTLLKL
QLKDASSSHRMLFSLSSVAKPQKFLSMRGAKRDQTLQLRNRCTKWELFHL
EIIPGSIGTGLRDSPNPFVRSFRTVPGAFTQVLLLLGVRFRLRSVHSRIL
HRDVAQEGETSVLQTGASSDIYSSRDCDLVFVANKCPSDGTGLNSTCFYL
NEVNTDRYLAIGKSDKNALSAKLLNEKSPVVVNTTGALGLVNLGFLEHEE
FDSAQWLMAGPRGQLEMRKHRRAWETFTLEYVQQSYTAALERVSIPPLYS
RAEETTRETLRAEITAKIAKAKGDVKVTQETQSGSPSIGFDHSAALAGLA
DEPKKVTTPASSKSKQSKVNTSSAAQKRGPAGKKASTAASKAGSAASKAA
SSTSKVSSSASKAATAASVSSALPRNKANRKAAKKNKRRQKAKQAKASAS
RTNGKPGPSSTVHGPVNDVTPAVQTEKDKKAEKDKKAEKDKKAESASGAV
SGESSSAHAATPHAQGPKCSACGLPTAGTVTKAMGKEFHPQCFCCDKPNE
PRCSRCVTGEENASGRRGSSRMVNLPGFGPAKPNAPHLPTALGNINNRGS
SGQPGRARLMTPVWPK*

mRNA from alignment at tig00000045_pilon:504904..507132+

Legend: polypeptidestart_codonCDSexonintronstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra6083.t1 ID=Ggra6083.t1|Name=Ggra6083.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2229bp|location=Sequence derived from alignment at tig00000045_pilon:504904..507132+ (Gracilaria gracilis GNS1m male)
ATGGCTTTGTTTGAGCGACCCAACGTGTTTCAGTTCAACGCCCTGTTACG
TCTCGGGTTTACGGCCCGCCTTCGTTCCGAAACCGCCGACATCTTTGTCG
CGCACAAGTCCAAAACGCTCGCCCGAGCTGACGCGCGTGAAAATGCAGCC
GACTTCTACTTTGTGTCTGGCGACAACACCTCCGCTCTCAAACCAATTCA
GGCGGTGGTGTTGTCGCAACGTGCAGAAGAACACACAGAAAGGTTTCTCA
CACTTGGAGAACTTCCCGCCCTCACAGAAACCCCAACACTTCTCAAGCTG
CAGTTGAAAGATGCCTCCAGTTCGCATCGCATGCTTTTCTCACTGAGTTC
TGTCGCCAAGCCGCAGAAGTTTCTCAGTATGCGTGGTGCCAAACGCGACC
AAACGCTGCAGTTGCGCAACCGGTGTACCAAGTGGGAGTTGTTTCACTTA
GAAATCATACCGGGCTCCATTGGCACCGGGTTGAGGGACTCACCTAATCC
GTTTGTACGGTCATTCCGTACGGTTCCGGGGGCCTTTACACAAGTATTAT
TGTTGCTTGGCGTTCGCTTCAGACTCCGTTCTGTTCATTCACGAATTCTC
CACCGAGATGTTGCGCAAGAAGGAGAAACCTCGGTGCTTCAAACTGGTGC
GAGTAGCGATATCTATTCCAGCCGCGACTGTGACTTGGTTTTTGTTGCCA
ACAAATGCCCATCAGATGGAACGGGTCTGAATTCGACGTGTTTCTATCTG
AACGAAGTGAACACAGACCGCTACCTTGCGATCGGCAAGTCGGATAAAAA
CGCTTTGTCTGCGAAACTGCTCAATGAGAAGTCTCCGGTTGTTGTGAACA
CGACAGGTGCGCTGGGGCTTGTAAATCTTGGCTTTCTCGAACACGAGGAG
TTTGACTCTGCTCAATGGCTTATGGCAGGTCCACGAGGTCAACTGGAAAT
GCGCAAGCACAGGAGAGCTTGGGAAACGTTCACACTTGAATACGTACAAC
AATCGTATACTGCTGCACTTGAACGTGTATCAATTCCGCCACTGTATAGC
CGTGCTGAAGAAACAACACGCGAAACCTTGAGAGCTGAGATCACCGCAAA
AATTGCCAAGGCCAAAGGGGATGTTAAAGTAACGCAGGAGACGCAATCAG
GGAGCCCTTCGATCGGTTTCGACCACTCAGCGGCACTCGCAGGCCTTGCA
GATGAACCAAAGAAAGTCACTACCCCAGCTTCGAGCAAAAGCAAGCAGAG
TAAAGTGAATACGTCGTCTGCTGCACAAAAACGAGGCCCAGCTGGGAAGA
AGGCTAGCACTGCAGCTTCGAAGGCCGGCTCCGCAGCTTCGAAGGCTGCC
TCCTCAACTTCGAAGGTCTCCTCCTCAGCTTCGAAGGCCGCTACCGCAGC
TTCCGTGTCCTCAGCGTTGCCAAGGAACAAAGCAAATCGAAAAGCGGCTA
AGAAGAACAAGAGGAGACAGAAGGCAAAGCAAGCCAAGGCTTCGGCCTCT
CGAACTAACGGGAAGCCTGGTCCTTCATCTACCGTGCACGGACCTGTAAA
TGATGTGACACCTGCGGTGCAAACGGAGAAGGATAAGAAAGCTGAGAAGG
ACAAGAAAGCTGAGAAGGATAAGAAAGCTGAGAGTGCATCGGGTGCCGTG
TCAGGAGAATCATCTTCTGCCCATGCAGCGACTCCCCACGCACAGGGACC
AAAATGTTCTGCGTGTGGGCTCCCGACAGCAGGCACGGTCACAAAAGCAA
TGGGAAAGGAGTTTCATCCTCAATGCTTCTGCTGTGGTCTGTGCAGACGG
CCGATGTCAATTGGCCCAAGTCAGTTCCGAGAGCGAAACGGGATCCCGTT
TTGCAATCCTTGTTATGCAAACCAAATCGCTTCTCGGTGTGCTCGATGTT
CGAAGCCGATCATGGATACTGTCATTACAGCGATGGACAAAACATGGCAC
AAAGACTGCTTGACATGTACAATTTGTAGACTACCGCTAACTCAAACATT
CTGGCTCTATGCAGACAAGCCTAATGAACCAAGGTGCAGCAGATGTGTTA
CAGGCGAAGAAAACGCATCTGGGAGGCGCGGTTCTTCGCGAATGGTGAAT
CTACCGGGCTTTGGTCCTGCGAAACCCAACGCCCCACACCTTCCAACAGC
GCTCGGGAATATCAATAACCGAGGAAGTTCTGGACAACCGGGACGTGCCA
GACTGATGACCCCCGTGTGGCCAAAGTAA

Coding sequence (CDS) from alignment at tig00000045_pilon:504904..507132+

>Ggra6083.t1 ID=Ggra6083.t1|Name=Ggra6083.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2001bp|location=Sequence derived from alignment at tig00000045_pilon:504904..507132+ (Gracilaria gracilis GNS1m male)
ATGGCTTTGTTTGAGCGACCCAACGTGTTTCAGTTCAACGCCCTGTTACG
TCTCGGGTTTACGGCCCGCCTTCGTTCCGAAACCGCCGACATCTTTGTCG
CGCACAAGTCCAAAACGCTCGCCCGAGCTGACGCGCGTGAAAATGCAGCC
GACTTCTACTTTGTGTCTGGCGACAACACCTCCGCTCTCAAACCAATTCA
GGCGGTGGTGTTGTCGCAACGTGCAGAAGAACACACAGAAAGGTTTCTCA
CACTTGGAGAACTTCCCGCCCTCACAGAAACCCCAACACTTCTCAAGCTG
CAGTTGAAAGATGCCTCCAGTTCGCATCGCATGCTTTTCTCACTGAGTTC
TGTCGCCAAGCCGCAGAAGTTTCTCAGTATGCGTGGTGCCAAACGCGACC
AAACGCTGCAGTTGCGCAACCGGTGTACCAAGTGGGAGTTGTTTCACTTA
GAAATCATACCGGGCTCCATTGGCACCGGGTTGAGGGACTCACCTAATCC
GTTTGTACGGTCATTCCGTACGGTTCCGGGGGCCTTTACACAAGTATTAT
TGTTGCTTGGCGTTCGCTTCAGACTCCGTTCTGTTCATTCACGAATTCTC
CACCGAGATGTTGCGCAAGAAGGAGAAACCTCGGTGCTTCAAACTGGTGC
GAGTAGCGATATCTATTCCAGCCGCGACTGTGACTTGGTTTTTGTTGCCA
ACAAATGCCCATCAGATGGAACGGGTCTGAATTCGACGTGTTTCTATCTG
AACGAAGTGAACACAGACCGCTACCTTGCGATCGGCAAGTCGGATAAAAA
CGCTTTGTCTGCGAAACTGCTCAATGAGAAGTCTCCGGTTGTTGTGAACA
CGACAGGTGCGCTGGGGCTTGTAAATCTTGGCTTTCTCGAACACGAGGAG
TTTGACTCTGCTCAATGGCTTATGGCAGGTCCACGAGGTCAACTGGAAAT
GCGCAAGCACAGGAGAGCTTGGGAAACGTTCACACTTGAATACGTACAAC
AATCGTATACTGCTGCACTTGAACGTGTATCAATTCCGCCACTGTATAGC
CGTGCTGAAGAAACAACACGCGAAACCTTGAGAGCTGAGATCACCGCAAA
AATTGCCAAGGCCAAAGGGGATGTTAAAGTAACGCAGGAGACGCAATCAG
GGAGCCCTTCGATCGGTTTCGACCACTCAGCGGCACTCGCAGGCCTTGCA
GATGAACCAAAGAAAGTCACTACCCCAGCTTCGAGCAAAAGCAAGCAGAG
TAAAGTGAATACGTCGTCTGCTGCACAAAAACGAGGCCCAGCTGGGAAGA
AGGCTAGCACTGCAGCTTCGAAGGCCGGCTCCGCAGCTTCGAAGGCTGCC
TCCTCAACTTCGAAGGTCTCCTCCTCAGCTTCGAAGGCCGCTACCGCAGC
TTCCGTGTCCTCAGCGTTGCCAAGGAACAAAGCAAATCGAAAAGCGGCTA
AGAAGAACAAGAGGAGACAGAAGGCAAAGCAAGCCAAGGCTTCGGCCTCT
CGAACTAACGGGAAGCCTGGTCCTTCATCTACCGTGCACGGACCTGTAAA
TGATGTGACACCTGCGGTGCAAACGGAGAAGGATAAGAAAGCTGAGAAGG
ACAAGAAAGCTGAGAAGGATAAGAAAGCTGAGAGTGCATCGGGTGCCGTG
TCAGGAGAATCATCTTCTGCCCATGCAGCGACTCCCCACGCACAGGGACC
AAAATGTTCTGCGTGTGGGCTCCCGACAGCAGGCACGGTCACAAAAGCAA
TGGGAAAGGAGTTTCATCCTCAATGCTTCTGCTGTGACAAGCCTAATGAA
CCAAGGTGCAGCAGATGTGTTACAGGCGAAGAAAACGCATCTGGGAGGCG
CGGTTCTTCGCGAATGGTGAATCTACCGGGCTTTGGTCCTGCGAAACCCA
ACGCCCCACACCTTCCAACAGCGCTCGGGAATATCAATAACCGAGGAAGT
TCTGGACAACCGGGACGTGCCAGACTGATGACCCCCGTGTGGCCAAAGTA
A