Ggra6033.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6033.t1
Unique NameGgra6033.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length187
Homology
BLAST of Ggra6033.t1 vs. uniprot
Match: A0A2V3IZ87 (Methanesulfonate monooxygenase ferredoxin subunit n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZ87_9FLOR)

HSP 1 Score: 338 bits (868), Expect = 3.450e-117
Identity = 166/186 (89.25%), Postives = 176/186 (94.62%), Query Frame = 0
Query:    1 MSAFVPTTSFKGVQLTTATSRSAVCTRRRAAPARVAPAMKQEAWVPLLETSEIAPGELKGVLVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDGVLTCTQHKSSWDLSTGELAGDWCPFPPVIGPLLGKLQAARPLTVYSVRENTGQIEALLDVEAKEDYEKDYWRGLLDASGKATGGYY 186
            MSAFVPTTSF G QLTTA ++ A+CTRRRAAPARVAP MKQEAWVPLLETSEI PGELKGV+VAGQQILVSCD+DGQVYASANICPHLGTPLTDGSIGDGVLTCTQHKSSWDLSTGELAGDWCPFPPV+GPLLGKLQ  RPLTVYSVREN GQIEALLDV+AK DYEK+YW+GLLDA+GKATGGYY
Sbjct:    1 MSAFVPTTSFTGRQLTTARNQ-ALCTRRRAAPARVAPCMKQEAWVPLLETSEITPGELKGVVVAGQQILVSCDFDGQVYASANICPHLGTPLTDGSIGDGVLTCTQHKSSWDLSTGELAGDWCPFPPVVGPLLGKLQGPRPLTVYSVRENGGQIEALLDVDAKADYEKEYWQGLLDATGKATGGYY 185          
BLAST of Ggra6033.t1 vs. uniprot
Match: R7QSE7 (Ferredoxin component n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSE7_CHOCR)

HSP 1 Score: 299 bits (766), Expect = 1.300e-101
Identity = 147/189 (77.78%), Postives = 167/189 (88.36%), Query Frame = 0
Query:    1 MSAFVPTTSFKGVQLTTATSRSAVCTRR--RAAPARVAP-AMKQEAWVPLLETSEIAPGELKGVLVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDGVLTCTQHKSSWDLSTGELAGDWCPFPPVIGPLLGKLQAARPLTVYSVRENTGQIEALLDVEAKEDYEKDYWRGLLDASGKATGGYY 186
            MSAFVP T+FKG  LT+  S SAVC  +   +APAR +   MKQ+AWVPLL+TSEI+PGELKGV+ AGQQILVSCDYDGQVYASANICPHLGTPLTDGS+GDGVLTCTQHKSSWDLSTGELAGDWCPFPP+IGP+LGKLQ  RPLT+Y VREN G+IEALLDV+AK DYEK+YW+G+LDA+GKATG Y+
Sbjct:    1 MSAFVPVTAFKGASLTS--SNSAVCGTKVKYSAPARRSSLVMKQDAWVPLLDTSEISPGELKGVVTAGQQILVSCDYDGQVYASANICPHLGTPLTDGSVGDGVLTCTQHKSSWDLSTGELAGDWCPFPPLIGPVLGKLQGPRPLTIYPVRENAGRIEALLDVDAKADYEKEYWQGILDATGKATGAYH 187          
BLAST of Ggra6033.t1 vs. uniprot
Match: A0A1X6P6Y5 (Rieske domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P6Y5_PORUM)

HSP 1 Score: 241 bits (616), Expect = 1.090e-78
Identity = 117/173 (67.63%), Postives = 137/173 (79.19%), Query Frame = 0
Query:   23 AVCTRRR------AAP--ARVAP-AMKQEAWVPLLETSEIAPGELKGVLVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDGVLTCTQHKSSWDLSTGELAGDWCPFPPVIGPLLGKLQAARPLTVYSVRENTGQIEALLDVEAKEDYEKDYWRGLLDASGKATGGYY 186
            A+C+RR       A+P  AR AP  MK + WVPL+ET+ + PGELK V   GQ ILV+CD DGQVYAS+NICPHLGTPLTDGS+GDGVLTC QHKSSWDL TGELAG+WCPFPPV+GPLLGKLQA   L V+ VRE +G IEALLD++A  ++E DYW+GLLDA GKA+G YY
Sbjct:   21 AICSRRVFAGTAVASPSAARAAPLTMKTDVWVPLVETAALEPGELKAVYTTGQSILVTCDIDGQVYASSNICPHLGTPLTDGSVGDGVLTCAQHKSSWDLKTGELAGEWCPFPPVLGPLLGKLQAPSTLAVFPVREKSGTIEALLDMDAVAEFESDYWKGLLDAQGKASGDYY 193          
BLAST of Ggra6033.t1 vs. uniprot
Match: Q7XY59 (Ferredoxin component (Fragment) n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY59_GRIJA)

HSP 1 Score: 237 bits (604), Expect = 4.740e-77
Identity = 118/184 (64.13%), Postives = 145/184 (78.80%), Query Frame = 0
Query:    1 MSAFVPTTSFKGVQLTTATSRSAVCTRRRAAPA-----RVAPAMKQEAWVPLLETSEIAPGELKGVLVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDGVLTCTQHKSSWDLSTGELAGDWCPFPPVIGPLLGKLQAARPLTVYSVRENTGQIEALLDVEAKEDYEKDYWRGLLDASG 179
            M+AFVP+ SF G+ +T A+   ++C    AAP+     R AP MK+EAWVPL+ET++I PGELKGV+ A QQ+LV+CDYDGQVYASAN+CPHLGTPLTDG + DGVL CTQHKSS+DL+TG +  +WC FPP+IGPLLG L     L VY+VR+N G IEALLDVEA+ DYE+DYW+GLLDA G
Sbjct:    1 MAAFVPS-SFTGLSVTPASK--SICPHTAAAPSKSNVSRRAPTMKKEAWVPLIETNDITPGELKGVVAAQQQVLVACDYDGQVYASANVCPHLGTPLTDGEVADGVLVCTQHKSSFDLTTGAVK-EWCTFPPLIGPLLGALSTPCDLPVYAVRDNAGTIEALLDVEARSDYEQDYWKGLLDARG 180          
BLAST of Ggra6033.t1 vs. uniprot
Match: A0A5J4YIW4 (Methanesulfonate monooxygenase ferredoxin subunit n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YIW4_PORPP)

HSP 1 Score: 236 bits (603), Expect = 1.180e-76
Identity = 115/178 (64.61%), Postives = 134/178 (75.28%), Query Frame = 0
Query:    9 SFKGVQLTTATSRSAVCTRRRAAPARVAPAMKQEAWVPLLETSEIAPGELKGVLVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDGVLTCTQHKSSWDLSTGELAGDWCPFPPVIGPLLGKLQAARPLTVYSVRENTGQIEALLDVEAKEDYEKDYWRGLLDASGKATGGYY 186
            S+ GVQ   A +  A   R R         M +EAWV LL TS+I+PGELK V  AGQ ++V+CDYDGQVYASANICPHLGTPL +GS+GDG + C QHKSSW+LSTGELAGDWCPFPP+IGPLLGKL    PL V+SVREN G IEALLD++ K DYE +YW GLLDA GKA+G Y+
Sbjct:   20 SWSGVQGAWAAAAPAAPVRARQNRRAAQIQMAKEAWVQLLPTSDISPGELKPVFAAGQSVVVACDYDGQVYASANICPHLGTPLDNGSVGDGNIVCAQHKSSWNLSTGELAGDWCPFPPLIGPLLGKLVTPSPLNVFSVRENDGFIEALLDIDLKSDYESNYWVGLLDARGKASGEYF 197          
BLAST of Ggra6033.t1 vs. uniprot
Match: A0A1X6P9H6 (Rieske domain-containing protein n=2 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P9H6_PORUM)

HSP 1 Score: 235 bits (600), Expect = 3.500e-76
Identity = 119/182 (65.38%), Postives = 135/182 (74.18%), Query Frame = 0
Query:   19 TSRSAVCTRRRAA--PARVAPA------------MKQEAWVPLLETSEIAPGELKGVLVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDGVLTCTQHKSSWDLSTGELAGDWCPFPPVIGPLLGKLQAARPLTVYSVRENTGQIEALLDVEAKEDYEKDYWRGLLDASGKATGGYY 186
            T  SAV TRR +A   A  APA            M+ +AWV LL TS+I PGELK V   GQ IL+SCDYDGQVYAS+NICPHLGTPLTDG +GDGVLTC QHKSSWDL TGEL+G WCPFPPV+GPLLGKLQ    L V+ VREN+G IEALLDV+A + +E +YW GLLD+ GKATG YY
Sbjct:   17 TGASAVMTRRSSAFGSAVAAPASQAARLSHAPMRMETDAWVQLLPTSDIEPGELKPVYTTGQNILLSCDYDGQVYASSNICPHLGTPLTDGEVGDGVLTCAQHKSSWDLKTGELSGTWCPFPPVLGPLLGKLQPPSNLAVFPVRENSGYIEALLDVDAAKAFESNYWFGLLDSKGKATGDYY 198          
BLAST of Ggra6033.t1 vs. uniprot
Match: Rieske (2Fe-2S) protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001CA3A3DE (Rieske (2Fe-2S) protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001CA3A3DE)

HSP 1 Score: 234 bits (596), Expect = 2.570e-75
Identity = 108/148 (72.97%), Postives = 121/148 (81.76%), Query Frame = 0
Query:   39 MKQEAWVPLLETSEIAPGELKGVLVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDGVLTCTQHKSSWDLSTGELAGDWCPFPPVIGPLLGKLQAARPLTVYSVRENTGQIEALLDVEAKEDYEKDYWRGLLDASGKATGGYY 186
            M+ +AWV LL TS+I PGELK V   GQ ILVSCDYDGQVYAS+NICPHLGTPLTDG +GDGVLTC QHKSSWDL TGEL+G WCPFPPV+GPLLGKLQ    L V+ VREN G IEALLDV+A + +E +YW GLLD+ GKATG YY
Sbjct:   69 METDAWVQLLPTSDIEPGELKPVYTTGQNILVSCDYDGQVYASSNICPHLGTPLTDGEVGDGVLTCAQHKSSWDLKTGELSGAWCPFPPVLGPLLGKLQPPSNLAVFPVRENAGYIEALLDVDAVKAFESNYWAGLLDSKGKATGEYY 216          
BLAST of Ggra6033.t1 vs. uniprot
Match: A0A7S3A272 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A272_9RHOD)

HSP 1 Score: 226 bits (575), Expect = 8.100e-72
Identity = 113/198 (57.07%), Postives = 144/198 (72.73%), Query Frame = 0
Query:    3 AFVPTTSFKGVQLTTATSRSAVCTRRR---AAP-----------ARVAPAMKQEAWVPLLETSEIAPGELKGVLVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDGVLTCTQHKSSWDLSTGELAGDWCPFPPVIGPLLGKLQAARPLTVYSVRENTGQIEALLDVEAKEDYEKDYWRGLLDASGKATGGYY 186
            AFV +  F GV        +AVC+ R    AAP           ARV   M Q+AWV L  T+++ PGE+K V VA Q +L++CDYDGQVYASAN+CPHLGTPL+DGS+GDG + C QHKS++DL+TG L G+WCP+PP+IGPLLGKLQ AR L  Y+VRE+ G +EAL++VEA++D+E+DYW GLLDA GKATG Y+
Sbjct:   48 AFVGSVGFGGVH-----GSAAVCSTRSGFLAAPVAQKNALRGKKARVT--MAQDAWVQLCPTADLTPGEVKSVYVAEQSVLIACDYDGQVYASANVCPHLGTPLSDGSVGDGAIVCAQHKSAFDLTTGALKGEWCPYPPLIGPLLGKLQPARDLLTYAVRESNGYVEALINVEARKDFEEDYWFGLLDARGKATGDYH 238          
BLAST of Ggra6033.t1 vs. uniprot
Match: M2WS61 (Ferredoxin component (Biphenyl dioxygenase, Rieske iron-sulfur component related protein) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2WS61_GALSU)

HSP 1 Score: 215 bits (547), Expect = 5.670e-68
Identity = 95/153 (62.09%), Postives = 121/153 (79.08%), Query Frame = 0
Query:   34 RVAPAMKQEAWVPLLETSEIAPGELKGVLVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDGVLTCTQHKSSWDLSTGELAGDWCPFPPVIGPLLGKLQAARPLTVYSVRENTGQIEALLDVEAKEDYEKDYWRGLLDASGKATGGYY 186
            R + +MK EAWV L++T EI PG+LK   VAGQ +LV CDYDGQVY +AN+CPHLGTPL  G IG G L C QH++SW LS G+LAG WCP+PP++GPLLGKL+  + L+V+ VRE  G IEAL+D++A +++E +YWRG+LDA GKATGGYY
Sbjct:   57 RYSISMKTEAWVKLVKTEEIKPGDLKPFFVAGQSLLVVCDYDGQVYCTANVCPHLGTPLDQGLIGSGTLICAQHRTSWRLSDGKLAGKWCPYPPILGPLLGKLKVPQDLSVFPVREMNGFIEALIDLDAAKEFESNYWRGILDAQGKATGGYY 209          
BLAST of Ggra6033.t1 vs. uniprot
Match: M1V7C4 (Rieske iron-sulfur cluster containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1V7C4_CYAM1)

HSP 1 Score: 202 bits (515), Expect = 1.660e-63
Identity = 96/167 (57.49%), Postives = 122/167 (73.05%), Query Frame = 0
Query:   20 SRSAVCTRRRAAPARVAPAMKQEAWVPLLETSEIAPGELKGVLVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDGVLTCTQHKSSWDLSTGELAGDWCPFPPVIGPLLGKLQAARPLTVYSVRENTGQIEALLDVEAKEDYEKDYWRGLLDASGKATGGYY 186
            +RS+ C +R      VA    +EAWV L+ TS++ PGEL+ V VA Q +LV+ D DG V+A+   C HL  PL  GSIGDGVLTC+QH+SS+DL TGE+   WC FPP++GPLLGKLQ   P++VY VREN G IEA L V+AK+++EK YW+G+LDA GKATGGYY
Sbjct:   16 TRSSCCVQRARRSTGVAKLAMKEAWVRLVPTSDLQPGELRTVTVASQLVLVAVDQDGSVFATQGYCSHLAVPLDTGSIGDGVLTCSQHRSSFDLKTGEVIS-WCTFPPILGPLLGKLQPPTPISVYPVRENAGYIEAYLQVDAKDEFEKQYWKGILDAQGKATGGYY 181          
The following BLAST results are available for this feature:
BLAST of Ggra6033.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IZ873.450e-11789.25Methanesulfonate monooxygenase ferredoxin subunit ... [more]
R7QSE71.300e-10177.78Ferredoxin component n=1 Tax=Chondrus crispus TaxI... [more]
A0A1X6P6Y51.090e-7867.63Rieske domain-containing protein n=1 Tax=Porphyra ... [more]
Q7XY594.740e-7764.13Ferredoxin component (Fragment) n=1 Tax=Griffithsi... [more]
A0A5J4YIW41.180e-7664.61Methanesulfonate monooxygenase ferredoxin subunit ... [more]
A0A1X6P9H63.500e-7665.38Rieske domain-containing protein n=2 Tax=Porphyra ... [more]
Rieske (2Fe-2S) protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI001CA3A3DE2.570e-7572.97Rieske (2Fe-2S) protein n=1 Tax=Escherichia coli T... [more]
A0A7S3A2728.100e-7257.07Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
M2WS615.670e-6862.09Ferredoxin component (Biphenyl dioxygenase, Rieske... [more]
M1V7C41.660e-6357.49Rieske iron-sulfur cluster containing protein n=2 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017941Rieske [2Fe-2S] iron-sulphur domainPFAMPF00355Rieskecoord: 44..120
e-value: 2.5E-15
score: 56.2
IPR017941Rieske [2Fe-2S] iron-sulphur domainPROSITEPS51296RIESKEcoord: 45..156
score: 23.741842
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyGENE3D2.102.10.10coord: 41..164
e-value: 5.1E-20
score: 73.4
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilySUPERFAMILY50022ISP domaincoord: 39..162
NoneNo IPR availablePANTHERPTHR21496:SF223-PHENYLPROPIONATE/CINNAMIC ACID DIOXYGENASE FERREDOXIN SUBUNITcoord: 39..162
NoneNo IPR availablePANTHERPTHR21496FERREDOXIN-RELATEDcoord: 39..162
NoneNo IPR availableCDDcd03467Rieskecoord: 44..154
e-value: 2.13211E-20
score: 79.455

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:180132..180692 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6033.t1Ggra6033.t1Gracilaria gracilis GNS1m malemRNAtig00000045_pilon 180132..180692 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6033.t1 ID=Ggra6033.t1|Name=Ggra6033.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=187bp
MSAFVPTTSFKGVQLTTATSRSAVCTRRRAAPARVAPAMKQEAWVPLLET
SEIAPGELKGVLVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDG
VLTCTQHKSSWDLSTGELAGDWCPFPPVIGPLLGKLQAARPLTVYSVREN
TGQIEALLDVEAKEDYEKDYWRGLLDASGKATGGYY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR017941Rieske_2Fe-2S
IPR036922Rieske_2Fe-2S_sf