Ggra6033.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6033.t1
Unique NameGgra6033.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length187
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:180132..180692 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703205.1
PFAMsRieske
Max annot lvl2759|Eukaryota
Evalue9.88e-69
EggNOG OGsCOG2146@1|root,2S5ES@2759|Eukaryota
DescriptionRieske-like [2Fe-2S] domain
COG categoryP
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6033Ggra6033Gracilaria gracilis GNS1m malegenetig00000045_pilon 180132..180692 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6033.t1.stop1Ggra6033.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 180132..180134 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6033.t1.CDS1Ggra6033.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 180132..180692 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6033.t1.exon1Ggra6033.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 180132..180692 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6033.t1.start1Ggra6033.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 180690..180692 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6033.t1Ggra6033.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 180132..180692 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6033.t1 ID=Ggra6033.t1|Name=Ggra6033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=187bp
MSAFVPTTSFKGVQLTTATSRSAVCTRRRAAPARVAPAMKQEAWVPLLET
SEIAPGELKGVLVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDG
VLTCTQHKSSWDLSTGELAGDWCPFPPVIGPLLGKLQAARPLTVYSVREN
TGQIEALLDVEAKEDYEKDYWRGLLDASGKATGGYY*
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spliced messenger RNA

>Ggra6033.t1 ID=Ggra6033.t1|Name=Ggra6033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000045_pilon:180132..180692- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCCTTCGTTCCCACCACCTCCTTCAAGGGCGTGCAGCTCACAAC
AGCCACCTCGCGCAGCGCCGTCTGCACGCGTCGTCGCGCCGCCCCAGCGC
GCGTTGCGCCCGCCATGAAGCAGGAGGCGTGGGTGCCGCTTCTGGAAACG
TCTGAAATCGCGCCCGGCGAGCTCAAGGGCGTGCTTGTAGCCGGCCAACA
GATCCTGGTGTCTTGCGACTATGACGGGCAGGTGTATGCGTCAGCCAACA
TCTGCCCGCATCTGGGAACGCCTCTCACGGACGGAAGCATAGGCGATGGA
GTTCTGACCTGCACGCAGCACAAGTCTTCGTGGGATCTGTCTACTGGTGA
ATTAGCGGGCGACTGGTGTCCGTTCCCCCCGGTTATCGGCCCGCTTCTAG
GTAAGTTGCAAGCCGCTCGTCCGCTCACGGTGTACTCTGTACGTGAGAAC
ACTGGACAAATTGAGGCGCTGCTGGACGTTGAGGCCAAGGAGGATTATGA
GAAGGACTACTGGAGGGGTTTGTTGGACGCCAGTGGCAAGGCTACCGGTG
GCTACTATTAG
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protein sequence of Ggra6033.t1

>Ggra6033.t1 ID=Ggra6033.t1|Name=Ggra6033.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=187bp
MSAFVPTTSFKGVQLTTATSRSAVCTRRRAAPARVAPAMKQEAWVPLLET
SEIAPGELKGVLVAGQQILVSCDYDGQVYASANICPHLGTPLTDGSIGDG
VLTCTQHKSSWDLSTGELAGDWCPFPPVIGPLLGKLQAARPLTVYSVREN
TGQIEALLDVEAKEDYEKDYWRGLLDASGKATGGYY*
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mRNA from alignment at tig00000045_pilon:180132..180692-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6033.t1 ID=Ggra6033.t1|Name=Ggra6033.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=561bp|location=Sequence derived from alignment at tig00000045_pilon:180132..180692- (Gracilaria gracilis GNS1m male)
ATGTCCGCCTTCGTTCCCACCACCTCCTTCAAGGGCGTGCAGCTCACAAC
AGCCACCTCGCGCAGCGCCGTCTGCACGCGTCGTCGCGCCGCCCCAGCGC
GCGTTGCGCCCGCCATGAAGCAGGAGGCGTGGGTGCCGCTTCTGGAAACG
TCTGAAATCGCGCCCGGCGAGCTCAAGGGCGTGCTTGTAGCCGGCCAACA
GATCCTGGTGTCTTGCGACTATGACGGGCAGGTGTATGCGTCAGCCAACA
TCTGCCCGCATCTGGGAACGCCTCTCACGGACGGAAGCATAGGCGATGGA
GTTCTGACCTGCACGCAGCACAAGTCTTCGTGGGATCTGTCTACTGGTGA
ATTAGCGGGCGACTGGTGTCCGTTCCCCCCGGTTATCGGCCCGCTTCTAG
GTAAGTTGCAAGCCGCTCGTCCGCTCACGGTGTACTCTGTACGTGAGAAC
ACTGGACAAATTGAGGCGCTGCTGGACGTTGAGGCCAAGGAGGATTATGA
GAAGGACTACTGGAGGGGTTTGTTGGACGCCAGTGGCAAGGCTACCGGTG
GCTACTATTAG
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Coding sequence (CDS) from alignment at tig00000045_pilon:180132..180692-

>Ggra6033.t1 ID=Ggra6033.t1|Name=Ggra6033.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=561bp|location=Sequence derived from alignment at tig00000045_pilon:180132..180692- (Gracilaria gracilis GNS1m male)
ATGTCCGCCTTCGTTCCCACCACCTCCTTCAAGGGCGTGCAGCTCACAAC
AGCCACCTCGCGCAGCGCCGTCTGCACGCGTCGTCGCGCCGCCCCAGCGC
GCGTTGCGCCCGCCATGAAGCAGGAGGCGTGGGTGCCGCTTCTGGAAACG
TCTGAAATCGCGCCCGGCGAGCTCAAGGGCGTGCTTGTAGCCGGCCAACA
GATCCTGGTGTCTTGCGACTATGACGGGCAGGTGTATGCGTCAGCCAACA
TCTGCCCGCATCTGGGAACGCCTCTCACGGACGGAAGCATAGGCGATGGA
GTTCTGACCTGCACGCAGCACAAGTCTTCGTGGGATCTGTCTACTGGTGA
ATTAGCGGGCGACTGGTGTCCGTTCCCCCCGGTTATCGGCCCGCTTCTAG
GTAAGTTGCAAGCCGCTCGTCCGCTCACGGTGTACTCTGTACGTGAGAAC
ACTGGACAAATTGAGGCGCTGCTGGACGTTGAGGCCAAGGAGGATTATGA
GAAGGACTACTGGAGGGGTTTGTTGGACGCCAGTGGCAAGGCTACCGGTG
GCTACTATTAG
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