Ggra6161.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6161.t1
Unique NameGgra6161.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length188
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000045_piloncontigtig00000045_pilon:718236..718799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6161Ggra6161Gracilaria gracilis GNS1m malegenetig00000045_pilon 718236..718799 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6161.t1.start1Ggra6161.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000045_pilon 718236..718238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6161.t1.CDS1Ggra6161.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000045_pilon 718236..718799 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6161.t1.exon1Ggra6161.t1.exon1Gracilaria gracilis GNS1m maleexontig00000045_pilon 718236..718799 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6161.t1.stop1Ggra6161.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000045_pilon 718797..718799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6161.t1Ggra6161.t1Gracilaria gracilis GNS1m malepolypeptidetig00000045_pilon 718236..718799 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6161.t1 ID=Ggra6161.t1|Name=Ggra6161.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=188bp
MSRGVFQLVLCLLLMFQLSVPKSSGSQKAILALRALLGRKASLCRFSCLL
QMKVALLSALLITTPVFAIPFGAVFLCRSMHKRDMTAMLLCSSGATLIAY
DSVAGTSGSQVSLTAVLTGLSSAALAAGTYVTVRIMGAGVHFILNIFAIS
IANILVPISIVGMREHRITSPLHFFQEEIKRFDVWST*
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spliced messenger RNA

>Ggra6161.t1 ID=Ggra6161.t1|Name=Ggra6161.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000045_pilon:718236..718799+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGTGGCGTTTTTCAGCTGGTGCTGTGTCTGCTCCTTATGTTCCA
ACTCTCAGTTCCGAAAAGTTCTGGATCTCAGAAGGCTATTCTTGCTTTAC
GGGCTCTCCTAGGCAGGAAGGCATCTCTGTGCCGTTTTTCCTGTCTCTTG
CAGATGAAGGTGGCTCTTTTGAGTGCCCTCCTTATTACAACACCAGTGTT
TGCAATCCCGTTTGGTGCCGTATTCTTATGTCGCTCTATGCATAAACGCG
ATATGACTGCCATGTTGTTATGCTCATCAGGAGCAACCCTTATAGCTTAT
GATTCGGTTGCAGGCACTTCTGGAAGCCAGGTGTCTTTAACAGCGGTTCT
AACTGGTCTAAGTTCGGCAGCCCTAGCAGCAGGAACCTATGTCACGGTCC
GCATCATGGGAGCAGGCGTGCACTTCATCTTGAACATTTTCGCCATAAGT
ATCGCGAACATTCTGGTTCCGATTTCTATAGTGGGGATGCGCGAGCACAG
AATCACTTCACCTTTACACTTTTTCCAAGAAGAAATTAAGCGGTTTGACG
TTTGGAGCACATAA
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protein sequence of Ggra6161.t1

>Ggra6161.t1 ID=Ggra6161.t1|Name=Ggra6161.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=188bp
MSRGVFQLVLCLLLMFQLSVPKSSGSQKAILALRALLGRKASLCRFSCLL
QMKVALLSALLITTPVFAIPFGAVFLCRSMHKRDMTAMLLCSSGATLIAY
DSVAGTSGSQVSLTAVLTGLSSAALAAGTYVTVRIMGAGVHFILNIFAIS
IANILVPISIVGMREHRITSPLHFFQEEIKRFDVWST*
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mRNA from alignment at tig00000045_pilon:718236..718799+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6161.t1 ID=Ggra6161.t1|Name=Ggra6161.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000045_pilon:718236..718799+ (Gracilaria gracilis GNS1m male)
ATGTCTCGTGGCGTTTTTCAGCTGGTGCTGTGTCTGCTCCTTATGTTCCA
ACTCTCAGTTCCGAAAAGTTCTGGATCTCAGAAGGCTATTCTTGCTTTAC
GGGCTCTCCTAGGCAGGAAGGCATCTCTGTGCCGTTTTTCCTGTCTCTTG
CAGATGAAGGTGGCTCTTTTGAGTGCCCTCCTTATTACAACACCAGTGTT
TGCAATCCCGTTTGGTGCCGTATTCTTATGTCGCTCTATGCATAAACGCG
ATATGACTGCCATGTTGTTATGCTCATCAGGAGCAACCCTTATAGCTTAT
GATTCGGTTGCAGGCACTTCTGGAAGCCAGGTGTCTTTAACAGCGGTTCT
AACTGGTCTAAGTTCGGCAGCCCTAGCAGCAGGAACCTATGTCACGGTCC
GCATCATGGGAGCAGGCGTGCACTTCATCTTGAACATTTTCGCCATAAGT
ATCGCGAACATTCTGGTTCCGATTTCTATAGTGGGGATGCGCGAGCACAG
AATCACTTCACCTTTACACTTTTTCCAAGAAGAAATTAAGCGGTTTGACG
TTTGGAGCACATAA
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Coding sequence (CDS) from alignment at tig00000045_pilon:718236..718799+

>Ggra6161.t1 ID=Ggra6161.t1|Name=Ggra6161.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=564bp|location=Sequence derived from alignment at tig00000045_pilon:718236..718799+ (Gracilaria gracilis GNS1m male)
ATGTCTCGTGGCGTTTTTCAGCTGGTGCTGTGTCTGCTCCTTATGTTCCA
ACTCTCAGTTCCGAAAAGTTCTGGATCTCAGAAGGCTATTCTTGCTTTAC
GGGCTCTCCTAGGCAGGAAGGCATCTCTGTGCCGTTTTTCCTGTCTCTTG
CAGATGAAGGTGGCTCTTTTGAGTGCCCTCCTTATTACAACACCAGTGTT
TGCAATCCCGTTTGGTGCCGTATTCTTATGTCGCTCTATGCATAAACGCG
ATATGACTGCCATGTTGTTATGCTCATCAGGAGCAACCCTTATAGCTTAT
GATTCGGTTGCAGGCACTTCTGGAAGCCAGGTGTCTTTAACAGCGGTTCT
AACTGGTCTAAGTTCGGCAGCCCTAGCAGCAGGAACCTATGTCACGGTCC
GCATCATGGGAGCAGGCGTGCACTTCATCTTGAACATTTTCGCCATAAGT
ATCGCGAACATTCTGGTTCCGATTTCTATAGTGGGGATGCGCGAGCACAG
AATCACTTCACCTTTACACTTTTTCCAAGAAGAAATTAAGCGGTTTGACG
TTTGGAGCACATAA
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