Ggra383.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra383.t1
Unique NameGgra383.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length160
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:235562..236041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog157072.XP_008865432.1
PFAMsRMI2
Max annot lvl2759|Eukaryota
KEGG koko:K15365
KEGG Pathwayko03460,map03460
KEGG ModuleM00414
Evalue0.000235
EggNOG OGs2BDQ3@1|root,2S134@2759|Eukaryota
DescriptionRecQ-mediated genome instability protein 2
COG categoryS
BRITEko00000,ko00001,ko00002,ko03400
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra383Ggra383Gracilaria gracilis GNS1m malegenetig00000950_pilon 235562..236041 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra383.t1.start1Ggra383.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000950_pilon 235562..235564 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra383.t1.CDS1Ggra383.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000950_pilon 235562..236041 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra383.t1.exon1Ggra383.t1.exon1Gracilaria gracilis GNS1m maleexontig00000950_pilon 235562..236041 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra383.t1.stop1Ggra383.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000950_pilon 236039..236041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra383.t1Ggra383.t1Gracilaria gracilis GNS1m malepolypeptidetig00000950_pilon 235562..236041 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra383.t1 ID=Ggra383.t1|Name=Ggra383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=160bp
MSATRSNSSSGRTNTGLSVGSRTPATKCLIRQARLLSKTTIVWIQGMVVW
IVNDQIAIDDGSGIARIDVMNHTRRDLATDAATLKTGDYVLVVGEVRGRY
KGHRMGLRATTLRNLSRFGVMMESMWHLEVVDAFLTSKEEQCKAEDTSDV
EIVDCPDPT*
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spliced messenger RNA

>Ggra383.t1 ID=Ggra383.t1|Name=Ggra383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp|location=Sequence derived from alignment at tig00000950_pilon:235562..236041+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGCTACCCGATCCAATTCCTCTTCCGGCCGAACAAACACTGGTCT
TTCCGTAGGGTCACGAACTCCTGCAACCAAGTGTCTAATACGTCAAGCAC
GTCTACTTTCGAAAACGACAATCGTATGGATACAGGGTATGGTAGTATGG
ATCGTAAACGATCAAATCGCAATCGATGATGGGTCTGGTATTGCACGAAT
CGATGTGATGAACCACACGAGAAGGGACCTTGCTACCGATGCGGCGACTC
TCAAGACTGGCGACTATGTTCTTGTTGTTGGGGAAGTTAGAGGTCGATAC
AAAGGTCACAGGATGGGACTAAGGGCTACTACGCTGCGGAACCTCTCGCG
CTTTGGTGTTATGATGGAAAGCATGTGGCATCTTGAAGTCGTCGATGCTT
TTCTTACTTCGAAAGAGGAGCAGTGCAAAGCAGAAGATACGAGTGACGTA
GAAATAGTAGACTGTCCTGATCCAACATGA
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protein sequence of Ggra383.t1

>Ggra383.t1 ID=Ggra383.t1|Name=Ggra383.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=160bp
MSATRSNSSSGRTNTGLSVGSRTPATKCLIRQARLLSKTTIVWIQGMVVW
IVNDQIAIDDGSGIARIDVMNHTRRDLATDAATLKTGDYVLVVGEVRGRY
KGHRMGLRATTLRNLSRFGVMMESMWHLEVVDAFLTSKEEQCKAEDTSDV
EIVDCPDPT*
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mRNA from alignment at tig00000950_pilon:235562..236041+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra383.t1 ID=Ggra383.t1|Name=Ggra383.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=480bp|location=Sequence derived from alignment at tig00000950_pilon:235562..236041+ (Gracilaria gracilis GNS1m male)
ATGTCCGCTACCCGATCCAATTCCTCTTCCGGCCGAACAAACACTGGTCT
TTCCGTAGGGTCACGAACTCCTGCAACCAAGTGTCTAATACGTCAAGCAC
GTCTACTTTCGAAAACGACAATCGTATGGATACAGGGTATGGTAGTATGG
ATCGTAAACGATCAAATCGCAATCGATGATGGGTCTGGTATTGCACGAAT
CGATGTGATGAACCACACGAGAAGGGACCTTGCTACCGATGCGGCGACTC
TCAAGACTGGCGACTATGTTCTTGTTGTTGGGGAAGTTAGAGGTCGATAC
AAAGGTCACAGGATGGGACTAAGGGCTACTACGCTGCGGAACCTCTCGCG
CTTTGGTGTTATGATGGAAAGCATGTGGCATCTTGAAGTCGTCGATGCTT
TTCTTACTTCGAAAGAGGAGCAGTGCAAAGCAGAAGATACGAGTGACGTA
GAAATAGTAGACTGTCCTGATCCAACATGA
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Coding sequence (CDS) from alignment at tig00000950_pilon:235562..236041+

>Ggra383.t1 ID=Ggra383.t1|Name=Ggra383.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=480bp|location=Sequence derived from alignment at tig00000950_pilon:235562..236041+ (Gracilaria gracilis GNS1m male)
ATGTCCGCTACCCGATCCAATTCCTCTTCCGGCCGAACAAACACTGGTCT
TTCCGTAGGGTCACGAACTCCTGCAACCAAGTGTCTAATACGTCAAGCAC
GTCTACTTTCGAAAACGACAATCGTATGGATACAGGGTATGGTAGTATGG
ATCGTAAACGATCAAATCGCAATCGATGATGGGTCTGGTATTGCACGAAT
CGATGTGATGAACCACACGAGAAGGGACCTTGCTACCGATGCGGCGACTC
TCAAGACTGGCGACTATGTTCTTGTTGTTGGGGAAGTTAGAGGTCGATAC
AAAGGTCACAGGATGGGACTAAGGGCTACTACGCTGCGGAACCTCTCGCG
CTTTGGTGTTATGATGGAAAGCATGTGGCATCTTGAAGTCGTCGATGCTT
TTCTTACTTCGAAAGAGGAGCAGTGCAAAGCAGAAGATACGAGTGACGTA
GAAATAGTAGACTGTCCTGATCCAACATGA
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