Ggra343.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra343.t1
Unique NameGgra343.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length371
Homology
BLAST of Ggra343.t1 vs. uniprot
Match: A0A2V3J5A0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5A0_9FLOR)

HSP 1 Score: 267 bits (682), Expect = 2.530e-83
Identity = 147/365 (40.27%), Postives = 212/365 (58.08%), Query Frame = 0
Query:    1 MVVIRLKSPFVSLIFSTISVFAEFALFTAIVLFNRYVECVALQKGRSISVRRHQRRVNIISYTALLIFFILEIVTSFVTEPALRLPLTDQQCIATDALPRLEQSSGVFPEEVTIIVECIGFKNNSVVVRAGNYSKVEKRVKCSNSTLIDFPVLSPVEYILDGANEPSSENPNPDPLLFCRDGGCVVARTVRSEAGSGGTLIGMSDFIERESLNLLREEQTPLPVLYTTIYFECEGC--LQRFARRLLSAYNQNSSDPMESRRRAFLGSEERTCPFGEELSDTEVPIGLVYSVTVVWALSFLSVLATILLRRHIFYDISNPLHWAKKTKHSDDQLIDGDPIVMTIHENGKQVVYVSGTASEATDMV 363
            MV+I LKS +VSLI + IS+  E +L  A++  N Y EC ALQKG  +SV RHQ R   +       FF +E++ SF ++PA++L    Q C+A + L R     G   EE+ I++ C+    +++ +R GNYS   ++V+C+ S  + F +   V   +  A   SSENP PDPLL C DG CVV +T   ++ S  T +  SD    + +++L+ + +P+  L TTI+        L +FA RLL AY++N +DP E RR  FLGSE  TC F      TEVP  ++ SV+ VW +S  +   T+LL R +FYDISNP+HWAK+T    D+ + GDP V  + ENG  V+YVSG+  E    +
Sbjct:    1 MVLIPLKSQYVSLINTIISLLTELSLLKALLRVNNYCECHALQKGHHVSVTRHQNRATCLVLVTTAAFFAIELLLSFYSDPAVKLTFQSQPCVAVETLTRRSGDPGTSLEEIGIVLSCVKTNESNIFLRVGNYSMETRKVECAESATLMFTLEPHVSLPIGTAAAVSSENPFPDPLLKCADGFCVVIQTASYQSSSSDTTVWFSDVFFADEVSMLQIDNSPIKFLNTTIFSAQNNTELLPKFAERLLQAYDENLNDPFELRRLMFLGSERDTCQFQRTSEATEVPPFIIVSVSTVWVISLAAYAMTLLLSRRVFYDISNPVHWAKRTYRRTDEPVHGDPSVSRVLENGHHVMYVSGSNPEGNGSI 365          
BLAST of Ggra343.t1 vs. uniprot
Match: A0A2V3IT05 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IT05_9FLOR)

HSP 1 Score: 247 bits (630), Expect = 5.070e-75
Identity = 143/381 (37.53%), Postives = 224/381 (58.79%), Query Frame = 0
Query:    1 MVVIRLKSPFVSLIFSTISVFAEFALFTAIVLFNRYVECVALQKGRSISVRRHQRRVNIISYTALLIFFILEIVTSFVTEPALRLPLTDQQCIATDALPRLEQSSGVFPEEVTIIVECIGFKNNSVVVRAGNYS---KVEKRVKCSNSTLIDFPVLSPVEYILDGANEPSSENPNPDPLLFC------------RDGGCVVARTVRSEAGSGGTLIGMSDFIERESLNLLREEQTPLPVLYTTIYFECEGCLQRFARRLLSAYNQNSSDPMESRRRAFLGSEERTCPFGEELSD-TEVPIGLVYSVTVVWALSFLSVLATILLRRHIFYDISNPLHWAKKTKHSDDQLIDGDPIVMTIHENGKQVVYVSGTASEATDMVSR 365
            MV I LKS FVSLI + IS  AE  LF A++ FN+Y EC+AL+KGR +SVR H+ R   ++  A+++F  LE++ SF ++PA+ +     +C+A D +   E  +G   +E  I++ CIG K +  + RAGN+S     + RV+C    L ++P    +++ L   N   +   + D +L C             +  C   R +   +  G T + +S  +    +  L  +Q  +P L T++ +   G  + FARRLL AY+++ +DPME R+R F+G E R C F     D T VP+GLVY +   W LSFL+  +T+LLRR IFYD+S+PLHWA++T    D+ I G+P+V +++E+G++++YVSG+AS   D++SR
Sbjct:    1 MVEIPLKSQFVSLIVTLISGLAELFLFGALLGFNKYSECIALRKGRQVSVRLHRIRAKFLAVLAMVVFIFLEVIMSFFSDPAIEIKFRTDECLAVDRIDLREGFTGDTNDEDFILIRCIGIKKDGFLQRAGNFSLNPNTKARVRCGKHALYEYPNEDDLQFTL--TNVTRTGGTDTDLVLECILPTPAVGEKPPTERLCAAVRQLPPNS-IGFTNVYLSAAVRESEVGPLVNQQVVIPFLETSVRYNTSGLSRNFARRLLRAYDKDVTDPMEIRKRVFMGIERRKCAFEHRKKDLTTVPLGLVYGIVAAWILSFLTFASTLLLRRSIFYDMSDPLHWAQRTYRHIDEPIVGNPVVTSVYEHGERLMYVSGSASNDDDLLSR 378          
BLAST of Ggra343.t1 vs. uniprot
Match: A0A2V3J5C2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5C2_9FLOR)

HSP 1 Score: 173 bits (439), Expect = 4.630e-47
Identity = 118/359 (32.87%), Postives = 185/359 (51.53%), Query Frame = 0
Query:    1 MVVIRLKSPFVSLIFSTISVFAEFALFTAIVLFNRYVECVALQKGRSISVRRHQRRVNIISYTALLIFFILEIVTSFVTEPALRLPLTDQQCIATDALPRLEQSSGVFPEEVTIIVECIGFKNNSVVVRAGNYSKVEKRVKCSNSTLIDFPVLS-PVEYILDGAN-EPSSENPNPDPLLFCRDGGCVVARTVRSEAGSGGTLIGMSDFIERESLNLLREEQTPLPVLYTTIYFECEGCLQRFARRLLSAYNQNSSDPMESRRRAFLGSEERTCPFGEELSDTEVPIGLVYSVTVVWALSFLSVLATILLRRHIFYDISNPLHWAKKTKHSDDQLIDGDPIVMTIHENGKQVVYVSGTAS 357
            MV+I LKS + SLI + IS  AE AL +A+++FN+Y+EC ALQ G  ++VR H+ R   ++  A L F  LE+ +SF ++P  +  L  + C + DAL   +    +  +   + V+CIG  +      AGN S  + R   +   + D  V     + +L  AN E + + P PD  +     GCV    V       G  +  +DF+  E ++ +  E   LPV  TTI +   G    FA R +   +Q  +D    RR  F GS    C F      T V  G +Y++ + WALS  + + +  +RR IFYD+S+PLHWA+KT   +D     +P+V T++ENG + + V+ +++
Sbjct:    1 MVLIPLKSQYTSLIVTVISGIAELALLSAVLVFNKYLECRALQNGGKVNVRHHRFRTKALTVAATLAFVFLEVFSSFYSDPDDKTELVRKNCTSLDALTVQQGLLNISTQTTVVGVKCIGINSTLFWQHAGNIS--DGRNIGNGGNIGDDEVFECEKKEVLYTANVERAPDEPVPDEYVV----GCVGTSCVF--VYRSGNEVTFTDFVHSEDVSRVLNESITLPVWKTTISYNVTGLESAFATRAVDLLSQGVTDGFTLRRGVFAGSAITQCNFKTFSDATRVRKGFIYAIVIAWALSISAFVGSFAIRRRIFYDMSDPLHWAQKTIRDNDLSDTDNPVVTTVYENGSRALLVTRSSA 351          
BLAST of Ggra343.t1 vs. uniprot
Match: A0A2V3IMC1 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMC1_9FLOR)

HSP 1 Score: 160 bits (406), Expect = 1.830e-42
Identity = 111/364 (30.49%), Postives = 179/364 (49.18%), Query Frame = 0
Query:    1 MVVIRLKSPFVSLIFSTISVFAEFALFTAIVLFNRYVECVALQKGRSISVRRHQRRVNIISYTALLIFFILEIVTSFVTEPALRLPLTDQQCIATDALPRLEQSSGVFPEEVTIIVECIGFKNNSVVVRAGNYSKVEKRVKCSNSTLIDFPVLSPVEYILDGANEPSSENPNPDPLLFCRDGGCVVARTVRSEAGSGGTLIGMSDFIERESLNLLREEQTPLPVLYTTIYFECEGCLQRFARRLLSAYNQNSSDPMESRRRAFLGSEERTCPFGEELSD-TEVPIGLVYSVTVVWALSFLSVLATILLRRHIFYDISNPLHWAKKTKHSDDQLIDGDPIVMTIHENGKQVVYVSGTASEATDMV 363
            MV I LK+ +VSLI + IS   E     A+   N   EC  L++ + + VR ++ R  II+  + L+F  LEI+ SF ++P        + C++ D + RL+   G F E   I  +C   + N   VR GN S  + +V+CS      + ++S  E         + + P     + C+   CV     ++     G L+   D +       +    T +  L T + F+    L  FA R + A+ +  +DP E RRR FLGS ++ CPF EE+ D T VP  L+YS+   W ++ L  +  ++LRR +F+D+ NPLHWA + +   D+ +  DP+V    E+    +YVS   ++A + V
Sbjct:    1 MVTIALKAQYVSLIITIISFICEVIFIAALQTVNSIRECQLLKQKKQLRVRNYRHRAKIIALISALLFLGLEIIVSFFSDPVQLELFQSEPCVSVDNVLRLQGPQGEFREADFIEGKCQTLRGNFNYVRVGNVSLSDGQVRCSKKAAYFYDIVSASE---------TKKLPVSTAEVSCKGETCVFVFEQQNSTYFSGALL--PDIVAELRSGAV---DTEMAFLKTELLFDSSEMLPVFAGRAVDAFLEQVNDPFELRRRVFLGSAKKNCPFVEEVIDGTSVPRQLLYSLLFAWIVALLFFVLCLVLRRKVFFDVGNPLHWAIQVQKRVDEAVKHDPVVTCATEDEALALYVSERGNKAEEEV 350          
BLAST of Ggra343.t1 vs. uniprot
Match: A0A2V3ISI7 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISI7_9FLOR)

HSP 1 Score: 156 bits (394), Expect = 1.410e-40
Identity = 103/361 (28.53%), Postives = 180/361 (49.86%), Query Frame = 0
Query:    1 MVVIRLKSPFVSLIFSTISVFAEFALFTAIVLFNRYVECVALQKGRSISVRRHQRRVNIISYTALLIFFILEIVTSFVTEPALRLPLTDQQCIATDALPRLEQSSGVFPEEVTIIVECIGFKNNSVVVRAGNYSKVEKRVKCSNSTLIDFPVLSPVEYILDGANEPSSENPNPDPLLFCRDGGCVVARTVRSEAGSGGTLIGMSDFIERESLNLLREEQTPLPVLYTTIYFECEGCLQRFARRLLSAYNQNSSDPMESRRRAFLGSEERTCPFGEELSDTEVPIGLVYSVTVVWALSFLSVLATILLRRHIFYDISNPLHWAKKTKHSDDQLIDGDPIVMTIHENGKQVVYVSGTASEATD 361
            MV+I LKS + SLI + +S  AE AL +A++ +N+Y+EC AL+ G  ++VR H+ R   ++  A L F  LE+  SF ++PAL+     + CI+ DALP       +      + + C+G   + +   AGN S  +  +KC +  L          +  D  + P+   P+   +    DG   +   + S     G+ +  ++ +    L+ + +    L V  TT+Y+   G  +   RR ++      +D    RR  F G+EE  C F      T +  G +Y++ V W LS  + L ++ +R  +FYD+S+PL WA++T   +D     +P+V T +ENG + V V+ +++ + +
Sbjct:    1 MVLIPLKSQYTSLIATILSGLAELALLSAVLGYNKYLECRALENGGRVNVRHHRFRTRALTVAATLAFVFLEVSNSFFSDPALKRGEVTKSCISLDALPIRRGMLDISLRAAVVGINCLGTNTSLLWQLAGNISD-DGEIKCGDDFL----------FSADIHHSPNEPVPDEHTMECILDGELNLCAFLYSN----GSEVTFTEIVLDTDLSFVLDNNYALRVWKTTVYYNTTGMERELLRRSITLARDLVTDQFVLRREVFAGAEETECNFDVFSPATTIKEGFLYAIAVAWTLSLAAFLGSLAIRGRVFYDMSDPLDWARQTVRDEDSSDIDNPVVTTRYENGTRFVLVTRSSAPSEE 346          
BLAST of Ggra343.t1 vs. uniprot
Match: A0A2V3J5B4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5B4_9FLOR)

HSP 1 Score: 106 bits (265), Expect = 3.130e-22
Identity = 96/354 (27.12%), Postives = 155/354 (43.79%), Query Frame = 0
Query:    4 IRLKSPFVSLIFSTISVFAEFALFTAIVLFNRYVECVALQKGRSISVRRHQRRVNIISYTALLIFFILEIVTSFVTEPALRLPLTDQQCIATDALPRLEQSSGVFPEEVT------IIVECIGFKNNSVVVRAGNYSKVEKRVKCSNSTLIDFPVLSPVEYILDGANEPSSENPNPDPLLFCRDGGCVVARTVRSEAGSGGTLIGMSDFIERESLNLLREEQTPLPVLYTTIYFECEGCLQRFARRLLSAYNQNSSDPMESRRRAFLGSEERTCPFGEELSD-TEVPIGLVYSVTVVWALSFLSVLATILLRRHIFYDISNPLHWAKKTKH---SDDQLIDGDPIVMTIHENGK 347
            I L+    SL+ +  S+  E A  +A+ +FN   EC +L+ G  +SV RH+ R+ I++  A L F  LE++TS  +        T   CI +      +  +  F ++        I + C+      V V+ GNYS     V+C    +  + V +  E++      P+S    P  +  C     +   T  S +    T + +S+    ES   +  E  P   L+ TI    E  L+  A++LL+ Y    SD  E RRR         C F  E  + TE+ +       ++WA+     L  + +RR +FYD+SN LHWA+KT +    DD   +   + M +   GK
Sbjct:    5 IPLRPSVTSLVITITSLVVELACLSALFIFNAVCECRSLRNGNRVSVARHRLRIKILTILATLTFVGLEVITSANSHTKPVTESTLSPCIRSVTKQNFDNINSSFDDQTVTNGRDNIGISCVNVGGGEVFVKNGNYSLDTLDVQCGAKPIFSY-VSAEKEFL-----PPAS----PGVITHCEQDEFLNMGTCASVSLQNKTRLLISERFSEESNFEIDAEFRPTQ-LFMTIG---EDQLESIAKQLLTLYTIGVSDEAEVRRRILTDGIRSQCSFDAETHEFTEIKLWAFILTVIIWAMCITFFLVMLFVRRGVFYDMSNALHWAEKTVYRQLEDDTGTEKGQVRMFVELKGK 344          
BLAST of Ggra343.t1 vs. uniprot
Match: A0A2V3IN83 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN83_9FLOR)

HSP 1 Score: 87.4 bits (215), Expect = 1.730e-15
Identity = 88/347 (25.36%), Postives = 153/347 (44.09%), Query Frame = 0
Query:    3 VIRLKSPFVSLIFSTISVFAEFALFTAIVLFNRYVECVALQKGRSISVRRHQRRVNIISYTALLIFFILEIVTSFVTEPALRLPLTDQQCIATD--ALPRLEQSSGVFPEEVTIIVECIGFK-----NNSVVVRAGNYSKVEKR--VKCSNSTLIDFPVLSPVEYILDGANEPSSENPNPDPLLFCRDGGCVVARTVRSEAGSGGTLIGMSDFIERESLNLLREEQTPLPVLYTTIYFE----CEGCLQRFARRLLSAYNQNSSDPMESRRRAFLGSEERTCPFGEELSD-TEVPIGLVYSVTVVWALSFLSVLATILLRRHIFYDISNPLHWAKKTKHSDDQLIDG 335
            +I L+     L+F+ +S  +E  L +A+++     EC  L   R +S++ H  R  +I   A+L+F  LE + S  T+  +       +C+  D      LE  S +  EE  +++ C+        N ++ V  GNYS+  ++  V CS   L+ + + +  + IL    EP++E         CR+G CV   +  S+       +  S  +     N   E        YT  + E        L   A  LL  Y +   + ++ RR+ F+ +E   C       + T VP  L+    + W  S +    T +L+  IFY+IS+PLHW ++T  + ++ +DG
Sbjct:   16 IIPLRPLTTQLLFTIVSALSEIGLISAVLVILTKKECHTLSTERPVSIKSHSLRWRLIPVVAMLMFIALETLVSVHTKTHIHHVKNSHKCVQVDLRTSEALEVESSLNKEEEAVMLNCVKMTPAEDANFNIEVYPGNYSRSGEKIFVDCSADWLMKYKLDTKGKGIL----EPNAEQ-------HCRNGFCVFLYSQESK-------VFFSPPLPSARFNHTNE--------YTGYWTEFIPGAVPSLNSTATYLLLLYQKGILEEIQIRRKLFMSAERGQCEMTNGSKEHTLVPYWLISITALSWFCSAILFALTRVLKSGIFYNISDPLHWTRRTYWAFNEGVDG 336          
The following BLAST results are available for this feature:
BLAST of Ggra343.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A2V3J5A02.530e-8340.27Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IT055.070e-7537.53Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5C24.630e-4732.87Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IMC11.830e-4230.49Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3ISI71.410e-4028.53Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J5B43.130e-2227.12Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3IN831.730e-1525.36Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 57..78
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 286..307
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 79..285
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 38..56
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 308..370
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..37
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 285..307
NoneNo IPR availableTMHMMTMhelixcoord: 57..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000950_piloncontigtig00000950_pilon:26990..28102 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra343.t1Ggra343.t1Gracilaria gracilis GNS1m malemRNAtig00000950_pilon 26990..28102 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra343.t1 ID=Ggra343.t1|Name=Ggra343.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=371bp
MVVIRLKSPFVSLIFSTISVFAEFALFTAIVLFNRYVECVALQKGRSISV
RRHQRRVNIISYTALLIFFILEIVTSFVTEPALRLPLTDQQCIATDALPR
LEQSSGVFPEEVTIIVECIGFKNNSVVVRAGNYSKVEKRVKCSNSTLIDF
PVLSPVEYILDGANEPSSENPNPDPLLFCRDGGCVVARTVRSEAGSGGTL
IGMSDFIERESLNLLREEQTPLPVLYTTIYFECEGCLQRFARRLLSAYNQ
NSSDPMESRRRAFLGSEERTCPFGEELSDTEVPIGLVYSVTVVWALSFLS
VLATILLRRHIFYDISNPLHWAKKTKHSDDQLIDGDPIVMTIHENGKQVV
YVSGTASEATDMVSRFAFGM*
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