Ggra5798.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra5798.t1
Unique NameGgra5798.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length264
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000935_piloncontigtig00000935_pilon:337181..337972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706471.1
PFAMsICMT,PEMT
Max annot lvl2759|Eukaryota
Evalue2.72e-40
EggNOG OGs2E1Z1@1|root,2S98C@2759|Eukaryota
DescriptionIsoprenylcysteine carboxyl methyltransferase (ICMT) family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra5798Ggra5798Gracilaria gracilis GNS1m malegenetig00000935_pilon 337181..337972 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5798.t1.stop1Ggra5798.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000935_pilon 337181..337183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5798.t1.CDS1Ggra5798.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000935_pilon 337181..337972 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5798.t1.exon1Ggra5798.t1.exon1Gracilaria gracilis GNS1m maleexontig00000935_pilon 337181..337972 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5798.t1.start1Ggra5798.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000935_pilon 337970..337972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra5798.t1Ggra5798.t1Gracilaria gracilis GNS1m malepolypeptidetig00000935_pilon 337181..337972 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra5798.t1 ID=Ggra5798.t1|Name=Ggra5798.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=264bp
MFKAAFVSSFCAGLRPTQRLALHERDGAPLHRRSTSRRRVRMNADPDNSP
ADAQKTTSTASAPSFDTDIFSKFVDSAQQKIDDFQQSVQEVDTSKLVDDT
KQASLGLVDNFLAGDWLNRGELYGAIQLVFVIFILRGGGFLDLLVNFLAG
PALFIVGAVISAKSVFDLGPKQLSIWPSPVPAGELKTDGLYEYVRHPMYA
GVLLASAGFAVATASPSRLALTIAFGAFLMKKIDVEEQFLKDSYPGYEEY
MQEVTFKLLPSMF*
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spliced messenger RNA

>Ggra5798.t1 ID=Ggra5798.t1|Name=Ggra5798.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000935_pilon:337181..337972- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCAAAGCAGCCTTCGTGTCGTCTTTCTGCGCCGGTCTACGACCAAC
GCAGCGCCTGGCGCTGCACGAACGCGATGGCGCTCCTCTTCACCGGCGCT
CCACCTCGCGCCGCCGCGTGCGTATGAACGCCGATCCGGACAACTCGCCG
GCAGACGCGCAGAAGACGACGTCGACCGCCAGCGCGCCCTCGTTTGATAC
CGACATATTCTCCAAGTTTGTTGATTCCGCACAGCAGAAGATTGACGACT
TTCAACAATCCGTCCAGGAGGTGGACACTTCCAAGCTGGTGGACGACACC
AAGCAAGCTTCTTTAGGGCTTGTGGACAACTTTTTAGCGGGCGATTGGTT
GAATCGAGGAGAATTATATGGTGCCATTCAGCTTGTGTTTGTGATCTTCA
TATTGCGCGGCGGCGGCTTTCTAGACTTGCTTGTTAACTTTCTGGCGGGC
CCGGCGCTTTTCATTGTGGGTGCCGTTATTTCGGCAAAGTCCGTGTTTGA
CCTTGGACCCAAACAGCTGTCCATTTGGCCGTCACCAGTGCCGGCAGGCG
AGCTGAAAACAGACGGCTTGTATGAATACGTGAGACATCCTATGTACGCG
GGCGTTTTGTTGGCGAGCGCTGGCTTTGCTGTGGCCACGGCGTCTCCGTC
GAGACTTGCGCTTACGATTGCGTTTGGGGCGTTCTTGATGAAGAAGATAG
ACGTGGAGGAACAATTCTTGAAGGATTCGTATCCGGGCTATGAGGAATAC
ATGCAAGAAGTTACGTTCAAGCTGTTACCAAGTATGTTTTAA
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protein sequence of Ggra5798.t1

>Ggra5798.t1 ID=Ggra5798.t1|Name=Ggra5798.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=264bp
MFKAAFVSSFCAGLRPTQRLALHERDGAPLHRRSTSRRRVRMNADPDNSP
ADAQKTTSTASAPSFDTDIFSKFVDSAQQKIDDFQQSVQEVDTSKLVDDT
KQASLGLVDNFLAGDWLNRGELYGAIQLVFVIFILRGGGFLDLLVNFLAG
PALFIVGAVISAKSVFDLGPKQLSIWPSPVPAGELKTDGLYEYVRHPMYA
GVLLASAGFAVATASPSRLALTIAFGAFLMKKIDVEEQFLKDSYPGYEEY
MQEVTFKLLPSMF*
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mRNA from alignment at tig00000935_pilon:337181..337972-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra5798.t1 ID=Ggra5798.t1|Name=Ggra5798.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=792bp|location=Sequence derived from alignment at tig00000935_pilon:337181..337972- (Gracilaria gracilis GNS1m male)
ATGTTCAAAGCAGCCTTCGTGTCGTCTTTCTGCGCCGGTCTACGACCAAC
GCAGCGCCTGGCGCTGCACGAACGCGATGGCGCTCCTCTTCACCGGCGCT
CCACCTCGCGCCGCCGCGTGCGTATGAACGCCGATCCGGACAACTCGCCG
GCAGACGCGCAGAAGACGACGTCGACCGCCAGCGCGCCCTCGTTTGATAC
CGACATATTCTCCAAGTTTGTTGATTCCGCACAGCAGAAGATTGACGACT
TTCAACAATCCGTCCAGGAGGTGGACACTTCCAAGCTGGTGGACGACACC
AAGCAAGCTTCTTTAGGGCTTGTGGACAACTTTTTAGCGGGCGATTGGTT
GAATCGAGGAGAATTATATGGTGCCATTCAGCTTGTGTTTGTGATCTTCA
TATTGCGCGGCGGCGGCTTTCTAGACTTGCTTGTTAACTTTCTGGCGGGC
CCGGCGCTTTTCATTGTGGGTGCCGTTATTTCGGCAAAGTCCGTGTTTGA
CCTTGGACCCAAACAGCTGTCCATTTGGCCGTCACCAGTGCCGGCAGGCG
AGCTGAAAACAGACGGCTTGTATGAATACGTGAGACATCCTATGTACGCG
GGCGTTTTGTTGGCGAGCGCTGGCTTTGCTGTGGCCACGGCGTCTCCGTC
GAGACTTGCGCTTACGATTGCGTTTGGGGCGTTCTTGATGAAGAAGATAG
ACGTGGAGGAACAATTCTTGAAGGATTCGTATCCGGGCTATGAGGAATAC
ATGCAAGAAGTTACGTTCAAGCTGTTACCAAGTATGTTTTAA
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Coding sequence (CDS) from alignment at tig00000935_pilon:337181..337972-

>Ggra5798.t1 ID=Ggra5798.t1|Name=Ggra5798.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=792bp|location=Sequence derived from alignment at tig00000935_pilon:337181..337972- (Gracilaria gracilis GNS1m male)
ATGTTCAAAGCAGCCTTCGTGTCGTCTTTCTGCGCCGGTCTACGACCAAC
GCAGCGCCTGGCGCTGCACGAACGCGATGGCGCTCCTCTTCACCGGCGCT
CCACCTCGCGCCGCCGCGTGCGTATGAACGCCGATCCGGACAACTCGCCG
GCAGACGCGCAGAAGACGACGTCGACCGCCAGCGCGCCCTCGTTTGATAC
CGACATATTCTCCAAGTTTGTTGATTCCGCACAGCAGAAGATTGACGACT
TTCAACAATCCGTCCAGGAGGTGGACACTTCCAAGCTGGTGGACGACACC
AAGCAAGCTTCTTTAGGGCTTGTGGACAACTTTTTAGCGGGCGATTGGTT
GAATCGAGGAGAATTATATGGTGCCATTCAGCTTGTGTTTGTGATCTTCA
TATTGCGCGGCGGCGGCTTTCTAGACTTGCTTGTTAACTTTCTGGCGGGC
CCGGCGCTTTTCATTGTGGGTGCCGTTATTTCGGCAAAGTCCGTGTTTGA
CCTTGGACCCAAACAGCTGTCCATTTGGCCGTCACCAGTGCCGGCAGGCG
AGCTGAAAACAGACGGCTTGTATGAATACGTGAGACATCCTATGTACGCG
GGCGTTTTGTTGGCGAGCGCTGGCTTTGCTGTGGCCACGGCGTCTCCGTC
GAGACTTGCGCTTACGATTGCGTTTGGGGCGTTCTTGATGAAGAAGATAG
ACGTGGAGGAACAATTCTTGAAGGATTCGTATCCGGGCTATGAGGAATAC
ATGCAAGAAGTTACGTTCAAGCTGTTACCAAGTATGTTTTAA
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