Ggra6435.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6435.t1
Unique NameGgra6435.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Homology
BLAST of Ggra6435.t1 vs. uniprot
Match: A0A0C1Y2R7 (Type IV secretion protein Rhs n=1 Tax=Streptomyces sp. 150FB TaxID=1576605 RepID=A0A0C1Y2R7_9ACTN)

HSP 1 Score: 85.1 bits (209), Expect = 3.080e-15
Identity = 55/151 (36.42%), Postives = 79/151 (52.32%), Query Frame = 0
Query:   35 NTTVRPSGLHLRDEANVRAFSQHGGFLLYRGFDDEQKNLGVHACMTQASYNALRNDKPPRGSIKPSGWEQLANGPRRQRCHLIAARLGGSHKDARNFVTCHAYANSPVMAYYERLVAEKLISLDDGLTIVYTITPIYEEPALYPIKIRMRA 185
            +T   P GL   DE +V      GG + YR      +  GV A +T++      N      S+ P+GWE         R HL+ A++GGS+KD RNFVT HAYANSP+M  YE  V +   ++D G  I Y+ TP+Y+  ++ P  + + A
Sbjct: 1394 HTQFDPLGLAPCDEKDVT----WGGRVHYRRLGPGGRAQGVTATLTRSMMGGTTNP-----SVDPAGWESDKGY---NRAHLLGAQIGGSNKDPRNFVTMHAYANSPIMRRYEGQVRK---AVDKGEVIEYSATPVYQGDSVIPEGVWLEA 1529          
BLAST of Ggra6435.t1 vs. uniprot
Match: A0A2U9P311 (Type IV secretion protein Rhs n=1 Tax=Streptomyces actuosus TaxID=1885 RepID=A0A2U9P311_STRAS)

HSP 1 Score: 80.1 bits (196), Expect = 1.590e-13
Identity = 55/155 (35.48%), Postives = 82/155 (52.90%), Query Frame = 0
Query:   40 PSGLHLRDEANVRAFSQHGGFLLYRGFDDEQKNLGVHACMTQASYNALRNDKPPRGSIKPSGWEQLANGPRRQRCHLIAARLGGSHKDARNFVTCHAYANSPVMAYYERLVAEKLISLDDGLTIVYTITPIY-EEPALYPIKIRMRAV-RRGFRI 192
            P GL   DE +V      GG + Y       +   +HA + Q   + L     P+  + P+GWE   +G    R HL+AA +GGS+KD RNFVT H+YANSPVM   E  +     ++ DG  I+Y++ PIY ++ A  P+ + + A   +GF +
Sbjct: 1420 PLGLKPCDEGDVT----WGGRVQYGQLGPHNRATSMHATIAQ---DMLGGKTSPQ--VDPAGWE---SGKGYNRAHLLAAMIGGSNKDPRNFVTMHSYANSPVMRQIELQIRN---AVKDGEIILYSVIPIYADDKAKIPLGVTIEAYGSKGFEM 1559          
BLAST of Ggra6435.t1 vs. uniprot
Match: A0A0M8V539 (Type IV secretion protein Rhs n=1 Tax=Streptomyces sp. MMG1121 TaxID=1415544 RepID=A0A0M8V539_9ACTN)

HSP 1 Score: 78.6 bits (192), Expect = 5.310e-13
Identity = 56/147 (38.10%), Postives = 78/147 (53.06%), Query Frame = 0
Query:   40 PSGLHLRDEANVRAFSQHGGFLLYRGFDDEQKNLGVHACMTQASYNALRNDKPPRGSIKPSGWEQLANGPRRQRCHLIAARLGGSHKDARNFVTCHAYANSPVMAYYERLVAEKLISLDDGLTIVYTITPIY-EEPALYPIKIRMRA 185
            P GL   DE++       GG + Y       +   +HA +T+   + L     P+  + P+GWE   +G    R HL+AA +GGS+KD RNFVT HAYANSPVM   E  V     +  DG  I Y++TPIY +E A  P+ + + A
Sbjct: 1423 PLGLTPCDESDPT----WGGRVQYGDLGPHGRATSMHATITR---DMLGGKTGPQ--VDPAGWE---SGKGYNRAHLLAAMIGGSNKDRRNFVTMHAYANSPVMRAVELQVRN---AARDGEIIQYSVTPIYADEHAKIPLGVTIEA 1554          
BLAST of Ggra6435.t1 vs. uniprot
Match: A0A0N0HHB9 (Type IV secretion protein Rhs n=3 Tax=Streptomyces TaxID=1883 RepID=A0A0N0HHB9_9ACTN)

HSP 1 Score: 77.8 bits (190), Expect = 9.720e-13
Identity = 52/147 (35.37%), Postives = 76/147 (51.70%), Query Frame = 0
Query:   40 PSGLHLRDEANVRAFSQHGGFLLYRGFDDEQKNLGVHACMTQASYNALRNDKPPRGSIKPSGWEQLANGPRRQRCHLIAARLGGSHKDARNFVTCHAYANSPVMAYYERLVAEKLISLDDGLTIVYTITPIY-EEPALYPIKIRMRA 185
            P GL   DE +V      GG + Y       +   +HA ++             +  + P+GW+   +G    R HL+AA +GGS+KD+RNFVT H+YANSP+M   E  V   +   DDG TI Y++TPIY +  A  P+ + + A
Sbjct: 1412 PLGLKPCDENDVT----WGGRVRYGAPGPHGRATSMHATISGDMLGGKT-----KAQVDPAGWQ---SGMGYNRAHLLAAMIGGSNKDSRNFVTMHSYANSPIMRQVELQVRNAV--RDDGETIQYSVTPIYADNNAKIPLGVTIEA 1544          
BLAST of Ggra6435.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces albidochromogenes TaxID=329524 RepID=UPI00110FB81E (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces albidochromogenes TaxID=329524 RepID=UPI00110FB81E)

HSP 1 Score: 75.5 bits (184), Expect = 4.830e-12
Identity = 47/125 (37.60%), Postives = 68/125 (54.40%), Query Frame = 0
Query:   61 LLYRGFDDEQKNLGVHACMTQASYNALRNDKPPRGSIKPSGWEQLANGPRRQRCHLIAARLGGSHKDARNFVTCHAYANSPVMAYYERLVAEKLISLDDGLTIVYTITPIYEEPALYPIKIRMRA 185
            +LY   D+  +   +HA + +    A  N   P G+  P GW   A      R HL+ A+LGGS+ D  NFVT HAYANSPVM + E  V +   +++ G TI Y++TP+Y+     P  +R+ A
Sbjct:  449 VLYGQLDEHGRPTAMHATLGKDMMGA--NPTDPHGN--PPGW---AKDQGYNRAHLLGAQLGGSNFDPANFVTMHAYANSPVMRHIENQVRK---AVEAGETIQYSVTPVYDGSRPIPTGVRIDA 563          
BLAST of Ggra6435.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. CT34 TaxID=1553907 RepID=UPI00068D88E3 (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. CT34 TaxID=1553907 RepID=UPI00068D88E3)

HSP 1 Score: 75.1 bits (183), Expect = 7.850e-12
Identity = 51/131 (38.93%), Postives = 67/131 (51.15%), Query Frame = 0
Query:   58 GGFLLYRGFDDEQKNLGVHACMTQASYNALRNDKPPRGSIKPSGWEQLANGPRRQRCHLIAARLGGSHKDARNFVTCHAYANSPVMAYYE---RLVAEKLISLDDGLTIVYTITPIYEEPALYPIKIRMRA 185
            GG + Y   D+  +   +HA +          D  P G   P GWE+        R HL+ A+LGGS++D RNFVT HAYANSPVM + E   R  AEK      G TI Y++TP+YE     P  + + A
Sbjct: 1156 GGRVRYGEPDEHGRPTAMHATLGADMMGKHTTD--PHGD--PPGWEKDKGY---NRAHLLGAQLGGSNRDPRNFVTMHAYANSPVMRHIENQVRAAAEK------GETIQYSVTPVYEGSHPVPKGVTVEA 1273          
BLAST of Ggra6435.t1 vs. uniprot
Match: A0A100J153 (Putative deoxyribonuclease RhsC n=8 Tax=Streptomyces TaxID=1883 RepID=A0A100J153_9ACTN)

HSP 1 Score: 75.1 bits (183), Expect = 8.030e-12
Identity = 52/147 (35.37%), Postives = 73/147 (49.66%), Query Frame = 0
Query:   40 PSGLHLRDEANVRAFSQHGGFLLYRGFDDEQKNLGVHACMTQASYNALRNDKPPRGSIKPSGWEQLANGPRRQRCHLIAARLGGSHKDARNFVTCHAYANSPVMAYYERLVAEKLISLDDGLTIVYTITPIY-EEPALYPIKIRMRA 185
            P GL   DE +V      G  + Y       +   +HA +T        N      S+ P+GW   A+G    R HL+AA +GGS+KD RNFVT H+YANSPVM   E  +   +   +D   I Y++TPIY +  A  P+ + + A
Sbjct: 1403 PLGLTPCDENDVT----WGDRVQYGALGPHNRATSMHATITGDMLGGKTNP-----SVDPAGW---ASGQGYNRAHLLAAMIGGSNKDPRNFVTMHSYANSPVMRQVELQIRNAV--KNDNEIIQYSVTPIYADHHAKIPLGVTIEA 1535          
BLAST of Ggra6435.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. E5N91 TaxID=1851996 RepID=UPI001EE905B1 (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. E5N91 TaxID=1851996 RepID=UPI001EE905B1)

HSP 1 Score: 74.3 bits (181), Expect = 1.230e-11
Identity = 51/165 (30.91%), Postives = 73/165 (44.24%), Query Frame = 0
Query:   25 HVDEIGIFEFNTTVRPSGLHLRDE------ANVRAFSQHGGFLLYRGFDDEQKNLGVHACMTQASYNALRNDKPPRGSIKPSGWEQLANGPRRQRCHLIAARLGGSHKDARNFVTCHAYANSPVMAYYERLVAEKLISLDDGLTIVYTITPIYEEPALYPIKIRM 183
            HV    +  +    R   L ++D       A       H     Y G D   +  GV A +T  +     N      S+ P+GW+   +G    R HL+AA LGG++ D RNFVT HAYANSPVM  +E  V   + +   G  + Y  TP+Y      P+ + +
Sbjct:  475 HVQVAAVSHYTKRQRTHDLTIQDIHAYYVLAGATPILVHNCGATYGGLDQHGRATGVVAKLTPDNIGGKTNP-----SVDPAGWQ---SGQGYNRAHLLAAMLGGANNDKRNFVTMHAYANSPVMRKFELQVRNAVRA---GENVTYRATPVYSGSNPIPLGVTL 628          
BLAST of Ggra6435.t1 vs. uniprot
Match: DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. HSG2 TaxID=2797167 RepID=UPI00190664B4 (DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. HSG2 TaxID=2797167 RepID=UPI00190664B4)

HSP 1 Score: 74.3 bits (181), Expect = 1.540e-11
Identity = 45/121 (37.19%), Postives = 64/121 (52.89%), Query Frame = 0
Query:   63 YRGFDDEQKNLGVHACMTQASYNALRNDKPPRGSIKPSGWEQLANGPRRQRCHLIAARLGGSHKDARNFVTCHAYANSPVMAYYERLVAEKLISLDDGLTIVYTITPIYEEPALYPIKIRM 183
            Y G D   +  GV A +T ++     +      S+ P+GW+   +G    R HL+AA LGG + D RNFVT HAYANSPVM  +E  V + + +   G  I+Y  TPIY      P+ + +
Sbjct: 2527 YGGLDQSGRATGVEAMLTPSNIGGKTSP-----SVDPAGWQ---SGQGYNRAHLLAAVLGGVNNDKRNFVTMHAYANSPVMRGFELQVRDAVKA---GENILYRATPIYSGSNPLPLGVTL 2636          
BLAST of Ggra6435.t1 vs. uniprot
Match: A0A2S1Z949 (Endonuclea_NS_2 domain-containing protein n=1 Tax=Streptomyces spongiicola TaxID=1690221 RepID=A0A2S1Z949_9ACTN)

HSP 1 Score: 70.1 bits (170), Expect = 2.400e-11
Identity = 46/118 (38.98%), Postives = 66/118 (55.93%), Query Frame = 0
Query:   88 RNDKPPRGSIKPSGWEQLANGPRRQRCHLIAARLGGSHKDARNFVTCHAYANSPVMAYYERLVAEKLISLDDGLTIVYTITPIYEEPALYPIKIRMRAVRRGFRIFDVLYDLIIWNSD 205
            ++  PP  S+ P+GW+   +G    R HL+AA LGG++ D RNFVT HAYANSPVM  +E  V + + +   G  I+Y  TPIY      P+ + +    RG   F +  D+ I N +
Sbjct:   61 KDPHPP--SVDPAGWQ---SGQGYNRAHLLAAVLGGANNDKRNFVTMHAYANSPVMRGFELRVRDAVKA---GENILYRATPIYSGSNPLPLGVTLSG--RGNAGFSL--DVTIVNRE 166          
The following BLAST results are available for this feature:
BLAST of Ggra6435.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C1Y2R73.080e-1536.42Type IV secretion protein Rhs n=1 Tax=Streptomyces... [more]
A0A2U9P3111.590e-1335.48Type IV secretion protein Rhs n=1 Tax=Streptomyces... [more]
A0A0M8V5395.310e-1338.10Type IV secretion protein Rhs n=1 Tax=Streptomyces... [more]
A0A0N0HHB99.720e-1335.37Type IV secretion protein Rhs n=3 Tax=Streptomyces... [more]
DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces albidochromogenes TaxID=329524 RepID=UPI00110FB81E4.830e-1237.60DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. CT34 TaxID=1553907 RepID=UPI00068D88E37.850e-1238.93DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
A0A100J1538.030e-1235.37Putative deoxyribonuclease RhsC n=8 Tax=Streptomyc... [more]
DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. E5N91 TaxID=1851996 RepID=UPI001EE905B11.230e-1130.91DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
DNA/RNA non-specific endonuclease n=1 Tax=Streptomyces sp. HSG2 TaxID=2797167 RepID=UPI00190664B41.540e-1137.19DNA/RNA non-specific endonuclease n=1 Tax=Streptom... [more]
A0A2S1Z9492.400e-1138.98Endonuclea_NS_2 domain-containing protein n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044929DNA/RNA non-specific endonuclease superfamilyGENE3D3.40.570.10Extracellular Endonuclease, subunit Acoord: 41..208
e-value: 1.1E-26
score: 95.3
IPR044927Type VII secretion system protein EssD-likePFAMPF13930Endonuclea_NS_2coord: 88..185
e-value: 4.1E-14
score: 52.9
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..240
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availableTMHMMTMhelixcoord: 7..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:221569..222291 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6435.t1Ggra6435.t1Gracilaria gracilis GNS1m malemRNAtig00000918_pilon 221569..222291 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6435.t1 ID=Ggra6435.t1|Name=Ggra6435.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MGFCACHLPIILILLSLTLAGFSFHVDEIGIFEFNTTVRPSGLHLRDEAN
VRAFSQHGGFLLYRGFDDEQKNLGVHACMTQASYNALRNDKPPRGSIKPS
GWEQLANGPRRQRCHLIAARLGGSHKDARNFVTCHAYANSPVMAYYERLV
AEKLISLDDGLTIVYTITPIYEEPALYPIKIRMRAVRRGFRIFDVLYDLI
IWNSDFNGVRVKFLCVGSLDQPGPPSLPRRRIERSSSPCT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR044929DNA/RNA_non-sp_Endonuclease_sf
IPR044927Endonuclea_NS_2