Ggra6435.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6435.t1
Unique NameGgra6435.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length241
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:221569..222291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog235985.BBPN01000004_gene3194
PFAMsRHS,RHS_repeat,Tox-HNH-EHHH
Max annot lvl201174|Actinobacteria
Evalue1.45e-14
EggNOG OGsCOG3209@1|root,COG3209@2|Bacteria,2GMBB@201174|Actinobacteria,2NFRY@228398|Streptacidiphilus
DescriptionRHS Repeat
COG categoryM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6435Ggra6435Gracilaria gracilis GNS1m malegenetig00000918_pilon 221569..222291 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6435.t1.start1Ggra6435.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 221569..221571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6435.t1.CDS1Ggra6435.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 221569..222291 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6435.t1.exon1Ggra6435.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 221569..222291 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6435.t1.stop1Ggra6435.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 222289..222291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6435.t1Ggra6435.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 221569..222291 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6435.t1 ID=Ggra6435.t1|Name=Ggra6435.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=241bp
MGFCACHLPIILILLSLTLAGFSFHVDEIGIFEFNTTVRPSGLHLRDEAN
VRAFSQHGGFLLYRGFDDEQKNLGVHACMTQASYNALRNDKPPRGSIKPS
GWEQLANGPRRQRCHLIAARLGGSHKDARNFVTCHAYANSPVMAYYERLV
AEKLISLDDGLTIVYTITPIYEEPALYPIKIRMRAVRRGFRIFDVLYDLI
IWNSDFNGVRVKFLCVGSLDQPGPPSLPRRRIERSSSPCT*
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spliced messenger RNA

>Ggra6435.t1 ID=Ggra6435.t1|Name=Ggra6435.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000918_pilon:221569..222291+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTTTCTGTGCTTGCCATCTTCCTATCATTCTCATACTATTATCTCT
AACTCTAGCAGGGTTCAGCTTTCATGTGGATGAGATTGGAATCTTTGAGT
TCAACACTACAGTCAGGCCAAGTGGTCTGCATTTGAGAGATGAAGCAAAC
GTTCGAGCTTTTTCGCAGCATGGCGGTTTTCTTTTGTACAGAGGATTCGA
TGATGAGCAAAAGAACTTAGGTGTTCACGCTTGTATGACCCAGGCAAGTT
ATAACGCGCTCAGAAACGATAAGCCACCTCGAGGATCGATCAAGCCTTCT
GGATGGGAACAACTCGCAAATGGACCAAGGAGGCAGCGTTGCCATTTGAT
TGCAGCCCGCCTCGGCGGCTCGCACAAAGATGCTAGGAACTTCGTCACTT
GCCATGCATACGCAAATTCTCCAGTTATGGCTTACTACGAACGTCTCGTG
GCCGAGAAGTTAATCTCATTGGACGATGGACTTACAATTGTTTATACTAT
AACTCCAATATACGAAGAACCAGCGTTGTACCCGATCAAGATTAGAATGA
GAGCTGTTCGGCGAGGATTTCGCATCTTTGATGTTTTGTATGATTTAATT
ATATGGAACAGCGATTTCAACGGAGTCAGAGTTAAGTTTCTTTGCGTTGG
AAGTCTTGACCAGCCCGGACCCCCTTCGCTTCCTAGAAGAAGAATTGAGC
GAAGTTCTTCGCCCTGCACGTAA
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protein sequence of Ggra6435.t1

>Ggra6435.t1 ID=Ggra6435.t1|Name=Ggra6435.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=241bp
MGFCACHLPIILILLSLTLAGFSFHVDEIGIFEFNTTVRPSGLHLRDEAN
VRAFSQHGGFLLYRGFDDEQKNLGVHACMTQASYNALRNDKPPRGSIKPS
GWEQLANGPRRQRCHLIAARLGGSHKDARNFVTCHAYANSPVMAYYERLV
AEKLISLDDGLTIVYTITPIYEEPALYPIKIRMRAVRRGFRIFDVLYDLI
IWNSDFNGVRVKFLCVGSLDQPGPPSLPRRRIERSSSPCT*
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mRNA from alignment at tig00000918_pilon:221569..222291+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6435.t1 ID=Ggra6435.t1|Name=Ggra6435.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=723bp|location=Sequence derived from alignment at tig00000918_pilon:221569..222291+ (Gracilaria gracilis GNS1m male)
ATGGGTTTCTGTGCTTGCCATCTTCCTATCATTCTCATACTATTATCTCT
AACTCTAGCAGGGTTCAGCTTTCATGTGGATGAGATTGGAATCTTTGAGT
TCAACACTACAGTCAGGCCAAGTGGTCTGCATTTGAGAGATGAAGCAAAC
GTTCGAGCTTTTTCGCAGCATGGCGGTTTTCTTTTGTACAGAGGATTCGA
TGATGAGCAAAAGAACTTAGGTGTTCACGCTTGTATGACCCAGGCAAGTT
ATAACGCGCTCAGAAACGATAAGCCACCTCGAGGATCGATCAAGCCTTCT
GGATGGGAACAACTCGCAAATGGACCAAGGAGGCAGCGTTGCCATTTGAT
TGCAGCCCGCCTCGGCGGCTCGCACAAAGATGCTAGGAACTTCGTCACTT
GCCATGCATACGCAAATTCTCCAGTTATGGCTTACTACGAACGTCTCGTG
GCCGAGAAGTTAATCTCATTGGACGATGGACTTACAATTGTTTATACTAT
AACTCCAATATACGAAGAACCAGCGTTGTACCCGATCAAGATTAGAATGA
GAGCTGTTCGGCGAGGATTTCGCATCTTTGATGTTTTGTATGATTTAATT
ATATGGAACAGCGATTTCAACGGAGTCAGAGTTAAGTTTCTTTGCGTTGG
AAGTCTTGACCAGCCCGGACCCCCTTCGCTTCCTAGAAGAAGAATTGAGC
GAAGTTCTTCGCCCTGCACGTAA
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Coding sequence (CDS) from alignment at tig00000918_pilon:221569..222291+

>Ggra6435.t1 ID=Ggra6435.t1|Name=Ggra6435.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=723bp|location=Sequence derived from alignment at tig00000918_pilon:221569..222291+ (Gracilaria gracilis GNS1m male)
ATGGGTTTCTGTGCTTGCCATCTTCCTATCATTCTCATACTATTATCTCT
AACTCTAGCAGGGTTCAGCTTTCATGTGGATGAGATTGGAATCTTTGAGT
TCAACACTACAGTCAGGCCAAGTGGTCTGCATTTGAGAGATGAAGCAAAC
GTTCGAGCTTTTTCGCAGCATGGCGGTTTTCTTTTGTACAGAGGATTCGA
TGATGAGCAAAAGAACTTAGGTGTTCACGCTTGTATGACCCAGGCAAGTT
ATAACGCGCTCAGAAACGATAAGCCACCTCGAGGATCGATCAAGCCTTCT
GGATGGGAACAACTCGCAAATGGACCAAGGAGGCAGCGTTGCCATTTGAT
TGCAGCCCGCCTCGGCGGCTCGCACAAAGATGCTAGGAACTTCGTCACTT
GCCATGCATACGCAAATTCTCCAGTTATGGCTTACTACGAACGTCTCGTG
GCCGAGAAGTTAATCTCATTGGACGATGGACTTACAATTGTTTATACTAT
AACTCCAATATACGAAGAACCAGCGTTGTACCCGATCAAGATTAGAATGA
GAGCTGTTCGGCGAGGATTTCGCATCTTTGATGTTTTGTATGATTTAATT
ATATGGAACAGCGATTTCAACGGAGTCAGAGTTAAGTTTCTTTGCGTTGG
AAGTCTTGACCAGCCCGGACCCCCTTCGCTTCCTAGAAGAAGAATTGAGC
GAAGTTCTTCGCCCTGCACGTAA
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