Ggra6412.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6412.t1
Unique NameGgra6412.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length345
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:112140..113174 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707099.1
PFAMsDUF4339,RRM_1,zf-RanBP
Max annot lvl2759|Eukaryota
KEGG koko:K13093,ko:K13098
KEGG Pathwayko05202,map05202
Evalue2.88e-62
EggNOG OGsKOG1548@1|root,KOG1548@2759|Eukaryota
DescriptionmRNA splicing, via spliceosome
COG categoryE
BRITEko00000,ko00001,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6412Ggra6412Gracilaria gracilis GNS1m malegenetig00000918_pilon 112140..113174 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6412.t1.start1Ggra6412.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000918_pilon 112140..112142 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6412.t1.CDS1Ggra6412.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000918_pilon 112140..113174 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6412.t1.exon1Ggra6412.t1.exon1Gracilaria gracilis GNS1m maleexontig00000918_pilon 112140..113174 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6412.t1.stop1Ggra6412.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000918_pilon 113172..113174 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6412.t1Ggra6412.t1Gracilaria gracilis GNS1m malepolypeptidetig00000918_pilon 112140..113174 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6412.t1 ID=Ggra6412.t1|Name=Ggra6412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=345bp
MTDAPDAAQQCDAVSPPAPPAPAKSSASPRSPPPSPPAVTRGDASHAART
SPRQSAAEQRERKRQARKRARKASRLRNLPNTSVYVTGLPPDVTADELAA
FCAKCGILLPDAHTGLARVKIYRDERGQAKGDALVTYALRPSVDNALQLL
DGACLRDSRFPLSVSEATFEHKKARTDTGAARVGSEAPRVSRHLFVREKM
SWDDDEGNQQSAPNASRIVILKNVFHPDKADYKLVQEDMEDGCAECGELD
RVTVFERNGEGAVAVKFKSIQSCLKCIQVMNGRWYDGRQLSAQFYDGHTD
YRYKETEADREERDRKWHQWLEQSEANQQTQTQSLNEQSKENAH*
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spliced messenger RNA

>Ggra6412.t1 ID=Ggra6412.t1|Name=Ggra6412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000918_pilon:112140..113174+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGACGCCCCTGACGCAGCGCAGCAATGCGACGCCGTCTCGCCGCC
CGCGCCGCCTGCACCGGCCAAATCGAGTGCATCGCCACGGAGCCCGCCGC
CGTCTCCCCCCGCCGTCACGCGTGGCGACGCATCGCATGCAGCTCGTACA
TCGCCGCGCCAGAGTGCCGCCGAGCAGCGCGAGCGCAAGCGACAGGCGAG
GAAGCGCGCCAGGAAGGCGTCCAGGTTACGTAATCTACCGAATACCAGCG
TGTATGTGACGGGGCTGCCGCCGGATGTGACGGCGGACGAACTGGCGGCG
TTCTGCGCCAAGTGCGGCATTCTGCTGCCGGACGCGCACACCGGGCTGGC
GCGCGTCAAGATCTATCGCGATGAACGGGGGCAGGCGAAGGGCGATGCGC
TCGTCACTTACGCGTTGCGACCGAGCGTTGACAACGCGCTGCAGCTTCTT
GATGGCGCTTGCTTGCGCGATTCGCGCTTTCCGCTGTCCGTGTCGGAGGC
TACTTTTGAACATAAGAAGGCGCGTACTGATACTGGCGCTGCACGAGTTG
GATCGGAGGCGCCACGCGTCTCCAGGCACTTGTTTGTGCGCGAGAAGATG
AGCTGGGACGACGACGAGGGCAATCAGCAGAGCGCGCCCAATGCATCGCG
GATCGTCATTTTGAAGAACGTGTTCCATCCGGACAAGGCCGACTACAAGC
TCGTACAAGAGGATATGGAGGACGGGTGCGCAGAGTGTGGCGAGCTTGAT
CGGGTCACAGTTTTCGAACGTAACGGTGAGGGCGCGGTGGCTGTCAAGTT
CAAGTCCATTCAGTCATGTCTCAAGTGCATACAGGTGATGAACGGAAGAT
GGTATGACGGCAGGCAATTGAGCGCACAGTTTTACGATGGACATACAGAC
TACCGCTACAAAGAGACGGAGGCAGACCGTGAGGAACGGGATAGAAAATG
GCACCAATGGCTGGAGCAAAGTGAAGCGAATCAACAAACTCAAACACAAT
CGCTAAACGAACAAAGTAAAGAAAATGCGCACTAA
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protein sequence of Ggra6412.t1

>Ggra6412.t1 ID=Ggra6412.t1|Name=Ggra6412.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=345bp
MTDAPDAAQQCDAVSPPAPPAPAKSSASPRSPPPSPPAVTRGDASHAART
SPRQSAAEQRERKRQARKRARKASRLRNLPNTSVYVTGLPPDVTADELAA
FCAKCGILLPDAHTGLARVKIYRDERGQAKGDALVTYALRPSVDNALQLL
DGACLRDSRFPLSVSEATFEHKKARTDTGAARVGSEAPRVSRHLFVREKM
SWDDDEGNQQSAPNASRIVILKNVFHPDKADYKLVQEDMEDGCAECGELD
RVTVFERNGEGAVAVKFKSIQSCLKCIQVMNGRWYDGRQLSAQFYDGHTD
YRYKETEADREERDRKWHQWLEQSEANQQTQTQSLNEQSKENAH*
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mRNA from alignment at tig00000918_pilon:112140..113174+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6412.t1 ID=Ggra6412.t1|Name=Ggra6412.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1035bp|location=Sequence derived from alignment at tig00000918_pilon:112140..113174+ (Gracilaria gracilis GNS1m male)
ATGACGGACGCCCCTGACGCAGCGCAGCAATGCGACGCCGTCTCGCCGCC
CGCGCCGCCTGCACCGGCCAAATCGAGTGCATCGCCACGGAGCCCGCCGC
CGTCTCCCCCCGCCGTCACGCGTGGCGACGCATCGCATGCAGCTCGTACA
TCGCCGCGCCAGAGTGCCGCCGAGCAGCGCGAGCGCAAGCGACAGGCGAG
GAAGCGCGCCAGGAAGGCGTCCAGGTTACGTAATCTACCGAATACCAGCG
TGTATGTGACGGGGCTGCCGCCGGATGTGACGGCGGACGAACTGGCGGCG
TTCTGCGCCAAGTGCGGCATTCTGCTGCCGGACGCGCACACCGGGCTGGC
GCGCGTCAAGATCTATCGCGATGAACGGGGGCAGGCGAAGGGCGATGCGC
TCGTCACTTACGCGTTGCGACCGAGCGTTGACAACGCGCTGCAGCTTCTT
GATGGCGCTTGCTTGCGCGATTCGCGCTTTCCGCTGTCCGTGTCGGAGGC
TACTTTTGAACATAAGAAGGCGCGTACTGATACTGGCGCTGCACGAGTTG
GATCGGAGGCGCCACGCGTCTCCAGGCACTTGTTTGTGCGCGAGAAGATG
AGCTGGGACGACGACGAGGGCAATCAGCAGAGCGCGCCCAATGCATCGCG
GATCGTCATTTTGAAGAACGTGTTCCATCCGGACAAGGCCGACTACAAGC
TCGTACAAGAGGATATGGAGGACGGGTGCGCAGAGTGTGGCGAGCTTGAT
CGGGTCACAGTTTTCGAACGTAACGGTGAGGGCGCGGTGGCTGTCAAGTT
CAAGTCCATTCAGTCATGTCTCAAGTGCATACAGGTGATGAACGGAAGAT
GGTATGACGGCAGGCAATTGAGCGCACAGTTTTACGATGGACATACAGAC
TACCGCTACAAAGAGACGGAGGCAGACCGTGAGGAACGGGATAGAAAATG
GCACCAATGGCTGGAGCAAAGTGAAGCGAATCAACAAACTCAAACACAAT
CGCTAAACGAACAAAGTAAAGAAAATGCGCACTAA
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Coding sequence (CDS) from alignment at tig00000918_pilon:112140..113174+

>Ggra6412.t1 ID=Ggra6412.t1|Name=Ggra6412.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1035bp|location=Sequence derived from alignment at tig00000918_pilon:112140..113174+ (Gracilaria gracilis GNS1m male)
ATGACGGACGCCCCTGACGCAGCGCAGCAATGCGACGCCGTCTCGCCGCC
CGCGCCGCCTGCACCGGCCAAATCGAGTGCATCGCCACGGAGCCCGCCGC
CGTCTCCCCCCGCCGTCACGCGTGGCGACGCATCGCATGCAGCTCGTACA
TCGCCGCGCCAGAGTGCCGCCGAGCAGCGCGAGCGCAAGCGACAGGCGAG
GAAGCGCGCCAGGAAGGCGTCCAGGTTACGTAATCTACCGAATACCAGCG
TGTATGTGACGGGGCTGCCGCCGGATGTGACGGCGGACGAACTGGCGGCG
TTCTGCGCCAAGTGCGGCATTCTGCTGCCGGACGCGCACACCGGGCTGGC
GCGCGTCAAGATCTATCGCGATGAACGGGGGCAGGCGAAGGGCGATGCGC
TCGTCACTTACGCGTTGCGACCGAGCGTTGACAACGCGCTGCAGCTTCTT
GATGGCGCTTGCTTGCGCGATTCGCGCTTTCCGCTGTCCGTGTCGGAGGC
TACTTTTGAACATAAGAAGGCGCGTACTGATACTGGCGCTGCACGAGTTG
GATCGGAGGCGCCACGCGTCTCCAGGCACTTGTTTGTGCGCGAGAAGATG
AGCTGGGACGACGACGAGGGCAATCAGCAGAGCGCGCCCAATGCATCGCG
GATCGTCATTTTGAAGAACGTGTTCCATCCGGACAAGGCCGACTACAAGC
TCGTACAAGAGGATATGGAGGACGGGTGCGCAGAGTGTGGCGAGCTTGAT
CGGGTCACAGTTTTCGAACGTAACGGTGAGGGCGCGGTGGCTGTCAAGTT
CAAGTCCATTCAGTCATGTCTCAAGTGCATACAGGTGATGAACGGAAGAT
GGTATGACGGCAGGCAATTGAGCGCACAGTTTTACGATGGACATACAGAC
TACCGCTACAAAGAGACGGAGGCAGACCGTGAGGAACGGGATAGAAAATG
GCACCAATGGCTGGAGCAAAGTGAAGCGAATCAACAAACTCAAACACAAT
CGCTAAACGAACAAAGTAAAGAAAATGCGCACTAA
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