Ggra6412.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra6412.t1
Unique NameGgra6412.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length345
Homology
BLAST of Ggra6412.t1 vs. uniprot
Match: A0A2V3J662 (HIV Tat-specific factor 1-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J662_9FLOR)

HSP 1 Score: 330 bits (846), Expect = 3.090e-109
Identity = 174/292 (59.59%), Postives = 227/292 (77.74%), Query Frame = 0
Query:   45 SHAARTSPRQSAAEQREXXXXXXXXXXXASRLRNLPNTSVYVTGLPPDVTADELAAFCAKCGILLPDAHTGLARVKIYRDERGQAKGDALVTYALRPSVDNALQLLDGACLRDSRFPLSVSEATFEHKKART----DTGAARVGSE---APRVSRHLFVREKMSWDDDEGNQQSAP--NASRIVILKNVFHPDKADYKLVQEDMEDGCAECGELDRVTVFERNGEGAVAVKFKSIQSCLKCIQVMNGRWYDGRQLSAQFYDGHTDYRYKETEADREERDRKWHQWLEQSEAN 327
            S +   +P  + AE+R XXXXXXXXXX A+  RN PNTS+Y++ LPPDVT D+L  FCAKCGIL+PD  TG AR+KIYRDE+G+ KGDAL TYALRPSV NA+++LDGA LR+    + V+EA+F+HK+ RT    D   ARV S    APR+S   +V+EKMSWDD++ N  ++   +ASRIVILKNVF  DKADY+L++EDM++GC + G+++++TVFE N  G VAVKF+SI+SCL+CIQVMNGRWYDGR+LSAQ YDG TDYR++E++A+REER+R W +WLE   +N
Sbjct:   19 SKSLEAAPESATAEKRXXXXXXXXXXXAAASQRNRPNTSIYISDLPPDVTHDQLETFCAKCGILVPDPRTGRARIKIYRDEQGRVKGDALATYALRPSVLNAVEILDGALLREGGPAVRVAEASFDHKQPRTQRSADVSEARVESAQEAAPRLSVRDYVQEKMSWDDEDNNAANSKLSSASRIVILKNVFDADKADYQLIREDMQEGCEQIGDVEKITVFEGNEHGVVAVKFRSIESCLRCIQVMNGRWYDGRRLSAQIYDGRTDYRHRESDANREERERNWKEWLESDSSN 310          
BLAST of Ggra6412.t1 vs. uniprot
Match: R7Q6P5 (Similar to HIV TAT specific factor 1 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6P5_CHOCR)

HSP 1 Score: 273 bits (699), Expect = 3.310e-86
Identity = 136/242 (56.20%), Postives = 176/242 (72.73%), Query Frame = 0
Query:   81 NTSVYVTGLPPDVTADELAAFCAKCGILLPDAHTGLARVKIYRDERGQAKGDALVTYALRPSVDNALQLLDGACLRDSRFPLSVSEATFEHKKARTDTGAARVGSEAPRVSRHLFVREKMSWDDDEGNQQSAPNASRIVILKNVFHPDKADYKLVQEDMEDGCAECGELDRVTVFERNGEGAVAVKFKSIQSCLKCIQVMNGRWYDGRQLSAQFYDGHTDYRYKETEADREERDRKWHQWLE 322
            NTSVYVTGLP DVT  ELA +  KCGI+LP A TGL RVK+Y DE G  KGD LVTYA++PSV+NA+ LLD A +R    P+ V  ATF+HK+     G     S  PR      V+E +SW + EG  Q     +RIVILKNVF    ADY +++EDME+GC  CG ++++TVFERN EGA+AVKF S+++C++CI+VMNGRWYDGR+LSA+FYDG +D+RYKETE ++ ER+++W +WLE
Sbjct:  131 NTSVYVTGLPADVTEQELADYFTKCGIILPSAETGLPRVKLYTDENGDFKGDGLVTYAMQPSVENAVTLLDNAPIRPGGTPIGVQAATFDHKQEWD--GKRHKSSFRPRE----LVQEALSWAE-EG--QEVAKTTRIVILKNVFGAKDADYNVIREDMEEGCGACGTVEKITVFERNAEGAIAVKFASLEACVECIKVMNGRWYDGRKLSAEFYDGVSDFRYKETEEEKSEREKRWQEWLE 363          
BLAST of Ggra6412.t1 vs. uniprot
Match: M2Y425 (RNA-binding protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y425_GALSU)

HSP 1 Score: 211 bits (538), Expect = 8.410e-62
Identity = 117/254 (46.06%), Postives = 164/254 (64.57%), Query Frame = 0
Query:   81 NTSVYVTGLPPDVTADELAAFCAKCGILLPDAHTGLARVKIYRDERGQAKGDALVTYALRPSVDNALQLLDGACLR-DSRFPLSVSEATFEHKKARTDTGAARVGSEAPRVSRHLF-----VREKMSWDD--DEGNQQSAPNASRIVILKNVFHPDKA-----DYKLVQEDMEDGCAECGELDRVTVFERNGEGAVAVKFKSIQSCLKCIQVMNGRWYDGRQLSAQFYDGHTDYRYKETEADREERDRKWHQWL 321
            NTSVY TG+P D T +E+  F +KCGIL  DA++G A+VK+YRD+ G  KGD +VTYAL+PSV+NA ++LD    R  +   + +  A FE K      G   +  + P   + LF     + +K SW+D  D+G         RIVILK VF P +A      Y+ +++DM + C++ GE++++TVFERN EG VAV+F+S  +   CI++M GRWY GRQL A+FYDG TDYRYKETE +R+ER +K+ +WL
Sbjct:  142 NTSVYFTGIPSDATEEEVVEFFSKCGILKVDAYSGKAKVKLYRDKLGYLKGDGVVTYALQPSVENAFKVLDQTEFRFGTGTRIHLEPARFELK------GEDFIPRKVPNTGKPLFSTKQLIEQKTSWNDGVDDGR------GLRIVILKKVFEPKEALTDPHYYEDIRKDMLEECSKLGEIEKLTVFERNPEGVVAVRFRSPAAAESCIELMTGRWYGGRQLEAEFYDGKTDYRYKETEEERKERIKKFEEWL 383          
BLAST of Ggra6412.t1 vs. uniprot
Match: A0A7S3A676 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A676_9RHOD)

HSP 1 Score: 195 bits (496), Expect = 2.020e-55
Identity = 109/249 (43.78%), Postives = 162/249 (65.06%), Query Frame = 0
Query:   81 NTSVYVTGLPPDVTADELAAFCAKCGILLPDAHTGLARVKIYRDERGQAKGDALVTYALRPSVDNALQLLDGACLRDSRFPLSVSEATFEHKKARTDTGAARVGSEAPRVSRHLFVREK-MSWDD--DEGNQQSAPNASRIVILKNVFHPDK----ADYKLVQEDMEDGCAECGELDRVTVFERNGEGAVAVKFKSIQSCLKCIQVMNGRWYDGRQLSAQFYDGHTDYRYKETEADREERDRKWHQWLE 322
            N+SVY  G+PPD T +E+  + +KCGI+ PD  TG A+VK+YRDE+ Q KGD +VTY  +PSVDNA+ LLDGA  +   + L V +A F   K + ++  +R   +    + H  +++K + W++  D+G         RIVILK+ F P++     DY+ ++EDME  C++ GE+++VTVF  N EG VAVKFK   S   CI+VMN R++DGR+L A F+DG +D+R KET+  R++R+  W ++LE
Sbjct:  171 NSSVYFAGIPPDSTEEEVENYFSKCGIVKPDPDTGKAKVKLYRDEKDQLKGDGVVTYLQKPSVDNAVLLLDGAEFKPG-WKLEVRKAEF---KIKGNSYISRPKRQKGVANAHQALKQKALGWNEGVDDGR------GLRIVILKHCFDPNQMTNPTDYEDLREDMEIECSKMGEVEKVTVFNGNSEGVVAVKFKQPASAESCIEVMNERFFDGRKLEAGFFDGKSDFRVKETDEQRKKREESWAKYLE 409          
BLAST of Ggra6412.t1 vs. uniprot
Match: A0A6B2LD64 (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LD64_9EUKA)

HSP 1 Score: 180 bits (457), Expect = 4.080e-51
Identity = 96/247 (38.87%), Postives = 149/247 (60.32%), Query Frame = 0
Query:   81 NTSVYVTGLPPDVTADELAAFCAKCGILLPDAHTGLARVKIYRDERGQAKGDALVTYALRPSVDNALQLLDGACLRD-SRFPLSVSEATFEHKKARTDTGAARVGSEAPRVSRHLFVREKMSWDDDEGNQQSAPNASRIVILKNVFHPDKAD-----YKLVQEDMEDGCAECGELDRVTVFERNGEGAVAVKFKSIQSCLKCIQVMNGRWYDGRQLSAQFYDGHTDYRYKETEADREERDRKWHQWL 321
            N ++YVTGLP DVT +E   FC   G++  D  T L ++KIY+D++G  KGDA+V++   PS+DNA +LLDG   R      + +  A FE+K  +     A +  +  R ++      ++ W+D E          R VI+K++F P  A+     Y+ +++++    A  G++D + +FERN EG VAVK+K      KCI++MNGRW+DGRQLSA FYDG+++Y   ET+  +EER+++W +WL
Sbjct:   18 NFTLYVTGLPKDVTDEEFIKFCTTAGVIAKDPVTRLPKIKIYKDDQGVPKGDAIVSFLKAPSIDNAFKLLDGFDFRPPENHVVKLELAKFENKPFKPKPKTAPLSKKQKRYNQE---EAELGWEDKE---------QRHVIIKHMFDPRVAEKDFSFYENLEKEIAVEFARIGQVDALKIFERNEEGVVAVKYKYEYDAEKCIEIMNGRWFDGRQLSAAFYDGYSNYFVAETDEQKEEREKQWDKWL 252          
BLAST of Ggra6412.t1 vs. uniprot
Match: L8HD55 (RNA recognition motif domain containing protein (Fragment) n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HD55_ACACA)

HSP 1 Score: 175 bits (443), Expect = 5.200e-48
Identity = 107/252 (42.46%), Postives = 157/252 (62.30%), Query Frame = 0
Query:   82 TSVYVTGLPPDVTADELAAFCAKCGILLPDAHTGLARVKIYRDERGQAKGDALVTYALRPSVDNALQLLDGACLRDSRFPLSVSEATFEHKKARTDTGAAR------VGSEAPRVSRHLFVREKMSWDDDEGNQQSAPNASRIVILKNVFHPDKAD-----YKLVQEDMEDGCAECGELDRVTVFERNGEGAVAVKFKSIQSCLKCIQVMNGRWYDGRQLSAQFYDGHTDYRYKETEADREERDRKWHQWLE 322
            T+VYV+GLP D+T +EL  F AKCGI+  D  +G  +VK+Y DE+G+ KGDALV Y  R SVD ALQLLD + +R     + V+EA FE+K    D+  A+      VG +  +    +   E++SW + E          R VI+KN+F P++A      Y  ++ D+ +   + GE++ +TVFERN EG VA+KF   ++ +KC++VMNGR++  RQL A++YDG T+Y+ KETEAD++ R   +  WLE
Sbjct:  123 TTVYVSGLPLDMTKEELLPFMAKCGIVRKDPDSGEYKVKLYEDEQGRLKGDALVVYFKRESVDLALQLLDESEIRPGCV-VRVTEAKFENKP---DSEQAKPKAKKPVGKKKQKKKVRINQEEELSWVEWE--------TRRHVIIKNMFSPEEAIGDDEFYPDLKNDVREEVEKFGEVEVLTVFERNPEGVVAIKFVEPEAAVKCLEVMNGRFFAKRQLVAEWYDGVTNYKVKETEADQKHRLDAFGDWLE 362          
BLAST of Ggra6412.t1 vs. uniprot
Match: HIV Tat-specific factor 1 n=1 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC36179 (HIV Tat-specific factor 1 n=1 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC36179)

HSP 1 Score: 174 bits (441), Expect = 4.030e-47
Identity = 96/248 (38.71%), Postives = 149/248 (60.08%), Query Frame = 0
Query:   81 NTSVYVTGLPPDVTADELAAFCAKCGILLPDAHTGLARVKIYRDERGQAKGDALVTYALRPSVDNALQLLDGACLRDSRFPLSVSEATFEHKKARTDTGAARVGSEAPRVSRHLFVREK-MSWDDDEGNQQSAPNASRIVILKNVFHP-----DKADYKLVQEDMEDGCAECGELDRVTVFERNGEGAVAVKFKSIQSCLKCIQVMNGRWYDGRQLSAQFYDGHTDYRYKETEADREERDRKWHQWLE 322
            NT+VYV+GLPPD+T DE     +K GI++ D  T   +VK+Y+D++G  KGD L  Y  R SVD AL+LLD   +R  R  L V +ATF+ K    +  A +   +     + L +++K + W  ++    +     R+VI+KN+FHP     D      ++ED+   CA+ G++ +V +F+R+ +G V+V +K  +    CIQ +NGRW+ GRQL+A+ +DG TDY+ +ET  +REER + W  +LE
Sbjct:  140 NTNVYVSGLPPDITKDEFVQLMSKFGIIMKDPQTEEYKVKLYKDKQGNLKGDGLCCYLKRESVDLALKLLDDDVIRGCR--LHVEKATFQLKG---EYDATKKKKKCKDYKKKLSLQQKQLDWRPEKNIGTTRMRHERVVIIKNMFHPKDFEEDPLVLNEIREDLRTECAKFGQVKKVLLFDRHPDGVVSVSYKEPEEADVCIQALNGRWFGGRQLNAEAWDGVTDYQVEETSREREERLKCWESFLE 382          
BLAST of Ggra6412.t1 vs. uniprot
Match: A0A4X2LCD4 (Uncharacterized protein n=3 Tax=Diprotodontia TaxID=38609 RepID=A0A4X2LCD4_VOMUR)

HSP 1 Score: 170 bits (430), Expect = 2.190e-45
Identity = 91/248 (36.69%), Postives = 147/248 (59.27%), Query Frame = 0
Query:   81 NTSVYVTGLPPDVTADELAAFCAKCGILLPDAHTGLARVKIYRDERGQAKGDALVTYALRPSVDNALQLLDGACLRDSRFPLSVSEATFEHKKARTDTGAARVGSEAPRVSRHLFVREK-MSWDDDEGNQQSAPNASRIVILKNVFHP-----DKADYKLVQEDMEDGCAECGELDRVTVFERNGEGAVAVKFKSIQSCLKCIQVMNGRWYDGRQLSAQFYDGHTDYRYKETEADREERDRKWHQWLE 322
            NT+VYVTGLPPD+T DE     +KCGI++ D  T   ++K+Y+D++G  KGD L  Y  + SVD AL+LLD   +R  R  L V +A F+ K    +  A++   +     + L +++K + W  ++    +     R+VI++N+FHP     D      ++ED+   C + G++ +V +F+R+ +G  +V +K  +    CIQ +NGRW+ GRQL+ + +DG TDY+ +ET  +REER + W  +LE
Sbjct:  138 NTNVYVTGLPPDITKDEFVQLMSKCGIIMKDPQTEEYKIKLYKDKQGNLKGDGLCCYLKKESVDLALKLLDDDEIRGYR--LHVEKAKFQLKG---EYDASKKKKKCKDYKKKLSLQQKQLDWRPEKKTGTARMRHERVVIIRNMFHPKDFEEDPLVLNEIREDLRTECEKFGQVKKVLLFDRHPDGVASVSYKEPEEADLCIQALNGRWFGGRQLNVEVWDGVTDYQVEETSREREERLKGWESFLE 380          
BLAST of Ggra6412.t1 vs. uniprot
Match: A0A151N7N7 (HIV Tat-specific factor 1 n=5 Tax=Crocodylia TaxID=1294634 RepID=A0A151N7N7_ALLMI)

HSP 1 Score: 169 bits (427), Expect = 6.870e-45
Identity = 96/262 (36.64%), Postives = 150/262 (57.25%), Query Frame = 0
Query:   81 NTSVYVTGLPPDVTADELAAFCAKCGILLPDAHTGLARVKIYRDERGQAKGDALVTYALRPSVDNALQLLDGACLRDSRFPLSVSEATFEHKKARTDTGAARVGSEAPRVSRHLFVREK-MSWDDDEGNQQSAPNASRIVILKNVFHP-----DKADYKLVQEDMEDGCAECGELDRVTVFERNGEGAVAVKFKSIQSCLKCIQVMNGRWYDGRQLSAQFYDGHTDYRYKETEADREERDRKWHQWLEQSEANQQTQTQSLN 336
            NT+VYVTGLPPDVT DE     +KCGI++ D  T   ++K+Y+D+ G  KGD L  Y  R SV  AL+LLD A +R   + L V  A F+ K    +  A++   +     + +  ++K + W  ++ +  +     R++I++N+FHP     D      ++ED+   C + G++ +V +F+R+ +G  +V FK       CIQ +NGRW+ GRQLS + +DG TDY+ +ET  +REER + W  +LE  +A+ Q  T   N
Sbjct:  142 NTNVYVTGLPPDVTKDEFIQVMSKCGIIMLDPQTDEPKIKLYKDKEGNLKGDGLCCYLKRESVGLALRLLDEAEIRG--YKLHVEVAKFQLKG---EYDASKKRKKCKDYRKKMSQQQKQLDWRPEKKDATARMRHERVIIIRNMFHPKDFEEDPLVLNEIREDLRTECEKFGQVKKVLIFDRHPDGVASVSFKEADEADLCIQALNGRWFGGRQLSVEPWDGVTDYQIEETSREREERLKGWGSFLEDPDASGQKTTSDAN 398          
BLAST of Ggra6412.t1 vs. uniprot
Match: A0A093P817 (HIV Tat-specific factor 1 (Fragment) n=3 Tax=Neognathae TaxID=8825 RepID=A0A093P817_PYGAD)

HSP 1 Score: 167 bits (423), Expect = 6.960e-45
Identity = 103/299 (34.45%), Postives = 159/299 (53.18%), Query Frame = 0
Query:   40 TRGDASHAARTSPRQSAAEQREXXXXXXXXXXXASRLRNLPNTSVYVTGLPPDVTADELAAFCAKCGILLPDAHTGLARVKIYRDERGQAKGDALVTYALRPSVDNALQLLDGACLRDSRFPLSVSEATFEHKKARTDTGAARVGSEAPRVSRHLFVREK-MSWDDDEGNQQSAPNASRIVILKNVFHP-----DKADYKLVQEDMEDGCAECGELDRVTVFERNGEGAVAVKFKSIQSCLKCIQVMNGRWYDGRQLSAQFYDGHTDYRYKETEADREERDRKWHQWLEQSEANQQTQT 332
            T G    A    PRQ+  +Q+                RN   T+VYVTGLPPD+T DE     +KCGI++ D  T   ++K+Y+D+ G  KGD L  Y  R SV  AL+LLD A +R   + L V  A F+ K    +  A++   +     + L  ++K + W  ++ +  +     RI+I++N+FHP     D      ++ED+   C + G++ +V +F+R+ +G  +V FK       C   +NGRW+ GRQLSA+ +DG TDY+ +ET  +REER + W  +LE  +A +Q  T
Sbjct:   40 TSGTQPSANEKGPRQTEPKQKAEKRKLEPGWFHVEEDRN---TNVYVTGLPPDITKDEFIQVMSKCGIIMRDPQTEEHKIKLYKDKEGNLKGDGLCCYLKRESVQLALRLLDEAEIRG--YKLHVEVAKFQLKG---EYDASKKKKKCKDYRKKLSQQQKQLDWRPEKKDGATRMRHERIIIIRNMFHPKDFEEDPLVLNEIREDLRTECEKFGQVKKVLIFDRHPDGVASVSFKEATEADLCKLTLNGRWFGGRQLSAETWDGVTDYQVEETAREREERLKVWGSFLEDPDAKEQQTT 330          
The following BLAST results are available for this feature:
BLAST of Ggra6412.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6623.090e-10959.59HIV Tat-specific factor 1-like n=1 Tax=Gracilariop... [more]
R7Q6P53.310e-8656.20Similar to HIV TAT specific factor 1 n=1 Tax=Chond... [more]
M2Y4258.410e-6246.06RNA-binding protein n=1 Tax=Galdieria sulphuraria ... [more]
A0A7S3A6762.020e-5543.78Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A6B2LD644.080e-5138.87Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
L8HD555.200e-4842.46RNA recognition motif domain containing protein (F... [more]
HIV Tat-specific factor 1 n=1 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC361794.030e-4738.71HIV Tat-specific factor 1 n=1 Tax=Dromiciops gliro... [more]
A0A4X2LCD42.190e-4536.69Uncharacterized protein n=3 Tax=Diprotodontia TaxI... [more]
A0A151N7N76.870e-4536.64HIV Tat-specific factor 1 n=5 Tax=Crocodylia TaxID... [more]
A0A093P8176.960e-4534.45HIV Tat-specific factor 1 (Fragment) n=3 Tax=Neogn... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 53..76
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 322..344
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..321
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..39
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..77
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..344
NoneNo IPR availableCDDcd12285RRM3_RBM39_likecoord: 216..296
e-value: 2.05754E-29
score: 106.475
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 83..165
e-value: 1.4E-6
score: 37.9
coord: 218..293
e-value: 0.013
score: 23.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 84..158
e-value: 5.3E-7
score: 29.4
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 82..167
score: 11.349401
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 211..314
e-value: 1.2E-22
score: 81.9
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 44..185
e-value: 8.5E-17
score: 63.4
IPR034393TatSF1-likePANTHERPTHR15608SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2coord: 31..329
IPR034392TatSF1-like, RNA recognition motif 1CDDcd12281RRM1_TatSF1_likecoord: 81..173
e-value: 1.54095E-36
score: 125.339
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 80..296

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000918_piloncontigtig00000918_pilon:112140..113174 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6412.t1Ggra6412.t1Gracilaria gracilis GNS1m malemRNAtig00000918_pilon 112140..113174 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra6412.t1 ID=Ggra6412.t1|Name=Ggra6412.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=345bp
MTDAPDAAQQCDAVSPPAPPAPAKSSASPRSPPPSPPAVTRGDASHAART
SPRQSAAEQRERKRQARKRARKASRLRNLPNTSVYVTGLPPDVTADELAA
FCAKCGILLPDAHTGLARVKIYRDERGQAKGDALVTYALRPSVDNALQLL
DGACLRDSRFPLSVSEATFEHKKARTDTGAARVGSEAPRVSRHLFVREKM
SWDDDEGNQQSAPNASRIVILKNVFHPDKADYKLVQEDMEDGCAECGELD
RVTVFERNGEGAVAVKFKSIQSCLKCIQVMNGRWYDGRQLSAQFYDGHTD
YRYKETEADREERDRKWHQWLEQSEANQQTQTQSLNEQSKENAH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR034393TatSF1-like
IPR034392TatSF1-like_RRM1
IPR035979RBD_domain_sf