Ggra3936.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3936.t1
Unique NameGgra3936.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length171
Homology
BLAST of Ggra3936.t1 vs. uniprot
Match: A0A2V3IQQ4 (Mitotic spindle-associated MMXD complex subunit MIP18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQQ4_9FLOR)

HSP 1 Score: 233 bits (595), Expect = 3.050e-76
Identity = 108/159 (67.92%), Postives = 134/159 (84.28%), Query Frame = 0
Query:   12 DTLDNPNPEVKVLKREIRNPDEPLTLKEHIFEIIRDIXXXEYPHSLEELGVVKIEYVDVEKPPTDSPGYGTVSIQFHPTVPHCSLASMIGLSIRSKLKESKVLEPKGEHYYKLKVTCIEGTHNNSRDINKQLSDKERVSAAFENPKIMRLLRECTDNLP 170
            D LDNPNPEVKVL RE R P +PLTL++ +FEIIRDI   E+PHSLEEL VV +  +++  PP DSPG+G + + F PTVPHCSLAS+IGLSI+SK++ES +L PKGEHYYKLKVTC++GTH ++ +INKQL DKERVSAAFENPKI+++LRECTD+LP
Sbjct:    2 DALDNPNPEVKVLSRERREPGKPLTLQQRVFEIIRDIRDPEHPHSLEELSVVDLNCINITNPPDDSPGHGKIWVSFTPTVPHCSLASIIGLSIQSKIRESGILNPKGEHYYKLKVTCVDGTHTSAGEINKQLGDKERVSAAFENPKILKVLRECTDHLP 160          
BLAST of Ggra3936.t1 vs. uniprot
Match: A0A0L1KI90 (MIP18 family protein n=1 Tax=Perkinsela sp. CCAP 1560/4 TaxID=1314962 RepID=A0A0L1KI90_9EUGL)

HSP 1 Score: 112 bits (280), Expect = 2.380e-28
Identity = 67/173 (38.73%), Postives = 97/173 (56.07%), Query Frame = 0
Query:   12 DTLDNPNPEVKVLKREIRNPDEPLTLKE-------------HIFEIIRDIXXXEYPHSLEELGVVKIEYVDVEKPPTDSPGYGT-VSIQFHPTVPHCSLASMIGLSIRSKLKESKVLEPKGEHYYKLKVTCIEGTHNNSRDINKQLSDKERVSAAFENPKIMRLLRECTDNLP 170
            D L N NP +  +K+ I   D  L+L +              ++E+++DI   E+P++LEELGV+ ++ + +E  P       T V I F PTVPHCS+A++IGL IR KL  +           K+K+   EGTHN    +NKQL+DKERV+AA ENP ++RL+  C    P
Sbjct:    3 DELVNANPLIHTVKK-IERSDANLSLTQIVALPVCDPIDSLEVYELLKDIKDPEHPNTLEELGVIDVKNIGIESIPVCGKCTLTYVVITFTPTVPHCSMAALIGLCIRVKLMRTL------PRCLKIKIYITEGTHNQEESVNKQLNDKERVAAALENPNLLRLINSCLSFKP 168          
BLAST of Ggra3936.t1 vs. uniprot
Match: A0A3S1GZK0 (FeS_assembly_P domain-containing protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1GZK0_ELYCH)

HSP 1 Score: 112 bits (279), Expect = 3.280e-28
Identity = 71/163 (43.56%), Postives = 98/163 (60.12%), Query Frame = 0
Query:    5 YGSSVHPDTLDNPNPEVKVLKREIRNPDEPLTLKEHIFEIIRDIXXXEYPHSLEELGVVKIEYVDVEKPPTDSPGYGTVSIQFHPTVPHCSLASMIGLSIRSKLKESKVLEPKGEHYYKLKVTCIEGTHNNSRDINKQLSDKERVSAAFENPKIMRLLRECTD 167
            + +   PD LD+   E+KVL+             E I+++I DI   E   SLE+L VV  E V V +  T   G    SI+F PTVPHC+LAS+IGLSIRSKL +S   +PK + + K      +GTH+ + +INKQ++DKER+SAA ENP + +L+  CTD
Sbjct:   26 FEAETQPDVLDS---ELKVLQ-------------ETIYDLISDIRDPEKAASLEDLNVVSEEGVTVRRLLT---GQVLASIEFVPTVPHCTLASIIGLSIRSKLDQSLPQKPKIDIFIK------KGTHDTADEINKQINDKERISAAMENPNLQKLVASCTD 163          
BLAST of Ggra3936.t1 vs. uniprot
Match: A0A150G9L7 (FeS_assembly_P domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G9L7_GONPE)

HSP 1 Score: 110 bits (276), Expect = 7.230e-28
Identity = 66/158 (41.77%), Postives = 98/158 (62.03%), Query Frame = 0
Query:   14 LDNPNPEVKVLKREIRNPD------EPLTLKEHIFEIIRDIXXXEYPHSLEELGVVKIEYVDVEKPPTDSPGYGTVSIQFHPTVPHCSLASMIGLSIRSKLKESKVLEPKGEHYYKLKVTCIEGTHNNSRDINKQLSDKERVSAAFENPKIMRLLREC 165
            L NPNP V+  +   R+        EP+   E IF+ IRDI   E+P++LE+L VV  E++D++         G VS+QF PTV HCS+A++IGLS+R KL  S  L P+    +K+ +    G+H++   +NKQLSDKERV+AA ENP ++ ++ +C
Sbjct:    4 LINPNPIVRERRATTRSEPRAEGGREPIDALE-IFDHIRDINDPEHPYTLEQLNVVSEEHIDIDDT------RGRVSVQFTPTVAHCSMATLIGLSLRVKLLRS--LPPR----FKVDIKLAPGSHSSEAAVNKQLSDKERVAAALENPNLLAMVNKC 148          
BLAST of Ggra3936.t1 vs. uniprot
Match: K1QP22 (UPF0195 protein FAM96A n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1QP22_CRAGI)

HSP 1 Score: 108 bits (270), Expect = 3.220e-27
Identity = 60/132 (45.45%), Postives = 86/132 (65.15%), Query Frame = 0
Query:   37 LKEHIFEIIRDIXXXEYPHSLEELGVVKIEYVDVEKPPTDSPGYGTVSIQFHPTVPHCSLASMIGLSIRSKLKESKVLEPKGEHYYKLKVTCIEGTHNNSRDINKQLSDKERVSAAFENPKIMRLLRECTDN 168
            ++E ++++IR I   E P +LEEL VV  E V V +   D      + + F PTVPHCSLAS+IGLSIR+KL+ S  +  K    +KL +   EGTH  + DINKQ++DKER++AA ENP + R++ +C +N
Sbjct:   16 MRELVYDLIRGIIDPEKPETLEELNVVSEEDVSVSRLNKDY----LIKVVFVPTVPHCSLASLIGLSIRTKLETS--IPDK----FKLDIFIKEGTHETADDINKQINDKERIAAAMENPNLQRIVNQCLEN 137          
BLAST of Ggra3936.t1 vs. uniprot
Match: A0A8B8DZ54 (MIP18 family protein FAM96A-like n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DZ54_CRAVI)

HSP 1 Score: 108 bits (270), Expect = 3.220e-27
Identity = 59/132 (44.70%), Postives = 87/132 (65.91%), Query Frame = 0
Query:   37 LKEHIFEIIRDIXXXEYPHSLEELGVVKIEYVDVEKPPTDSPGYGTVSIQFHPTVPHCSLASMIGLSIRSKLKESKVLEPKGEHYYKLKVTCIEGTHNNSRDINKQLSDKERVSAAFENPKIMRLLRECTDN 168
            +KE ++++IR I   E P +LE+L V++ E + + +   D      V I F PTVPHCSLAS+IGLSIR+KL+ S  +  K    +KL +   EGTH  + DINKQ++DKER++AA ENP + R++ +C +N
Sbjct:   16 MKELVYDLIRGIVDPEKPETLEDLNVIREEDITINRLNEDY----LVQILFVPTVPHCSLASLIGLSIRTKLETS--IPDK----FKLDIFIKEGTHETADDINKQINDKERIAAAMENPNLQRIVHQCLEN 137          
BLAST of Ggra3936.t1 vs. uniprot
Match: cytosolic iron-sulfur assembly component 2A-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE55260 (cytosolic iron-sulfur assembly component 2A-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE55260)

HSP 1 Score: 107 bits (268), Expect = 1.680e-26
Identity = 61/131 (46.56%), Postives = 87/131 (66.41%), Query Frame = 0
Query:   37 LKEHIFEIIRDIXXXEYPHSLEELGVVKIEYVDVEKPPTDSPGYGTVSIQFHPTVPHCSLASMIGLSIRSKLKESKVLEPKGEHYYKLKVTCIEGTHNNSRDINKQLSDKERVSAAFENPKIMRLLRECTD 167
            L+E I++IIRD+   E P +LEEL V+  E V V +      G   V + F PTVPHCSLAS+IGLS+R+KL+  K L  +    +KL +   EGTH+ + +INKQ++DKER++AA ENP +  L+ +CT+
Sbjct:   46 LEETIYDIIRDVRDPEKPETLEELNVISEEGVHVSRL---QDGQLLVKLTFVPTVPHCSLASLIGLSLRTKLE--KCLPEQ----HKLDIFIKEGTHSTADEINKQINDKERIAAAMENPNLRELISKCTE 167          
BLAST of Ggra3936.t1 vs. uniprot
Match: cytosolic iron-sulfur assembly component 2A n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI0003599105 (cytosolic iron-sulfur assembly component 2A n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI0003599105)

HSP 1 Score: 106 bits (264), Expect = 2.970e-26
Identity = 61/132 (46.21%), Postives = 86/132 (65.15%), Query Frame = 0
Query:   37 LKEHIFEIIRDIXXXEYPHSLEELGVVKIEYVDVEKPPTDSPGYGTVSIQFHPTVPHCSLASMIGLSIRSKLKESKVLEPKGEHYYKLKVTCIEGTHNNSRDINKQLSDKERVSAAFENPKIMRLLRECTDN 168
            LKE ++++I  I   E P +LEEL V+  E V  ++      G   V+I+F PTVPHCSLAS+IGL++RSKL   K L  K     K+ +   EGTH+ + +INKQ++DKER+SAA ENP +  L++EC +N
Sbjct:   18 LKETVYDLISCIRDPEKPETLEELNVISEEGVQAKRLEN---GQFLVNIEFVPTVPHCSLASIIGLTMRSKL--DKCLPQK----LKVDIFIKEGTHDTADEINKQINDKERISAAMENPNLQTLVKECIEN 140          
BLAST of Ggra3936.t1 vs. uniprot
Match: A0A1I7S9N2 ((pine wood nematode) hypothetical protein n=2 Tax=Bursaphelenchus TaxID=6324 RepID=A0A1I7S9N2_BURXY)

HSP 1 Score: 106 bits (265), Expect = 3.440e-26
Identity = 64/161 (39.75%), Postives = 92/161 (57.14%), Query Frame = 0
Query:   12 DTLDNPNPEVKVLK-REIRN------PDEPLTLKEHIFEIIRDIXXXEYPHSLEELGVVKIEYVDVEKPPTDSPGYGTVSIQFHPTVPHCSLASMIGLSIRSKLKESKVLEPKGEHYYKLKVTCIEGTHNNSRDINKQLSDKERVSAAFENPKIMRLLREC 165
            + LDN  P +  +K RE+R+       +E L     +F+ IRDI   E+P++LE+L VV+ E ++V+      P    V I+F PT+PHCSLA++IGL +  KL+ S     K      + V   EGTHN    IN+QL+DKERV+AA EN  +M  +  C
Sbjct:    5 ERLDNIAPVIHAVKPREVRSIGSLDDDEEELLDAREVFDYIRDITDPEHPYTLEQLNVVQEELIEVDH---SRPSMPVVRIRFTPTIPHCSLAALIGLMLVIKLQRSLAKNVK------IDVKITEGTHNTEHAINRQLADKERVAAALENTSLMETVNRC 156          
BLAST of Ggra3936.t1 vs. uniprot
Match: A0A182EIR5 (FeS_assembly_P domain-containing protein n=4 Tax=Onchocercidae TaxID=6296 RepID=A0A182EIR5_ONCOC)

HSP 1 Score: 106 bits (264), Expect = 4.860e-26
Identity = 67/164 (40.85%), Postives = 100/164 (60.98%), Query Frame = 0
Query:   11 PDTLDNPNPEVKVLKREIR-------NPD--EPLTLKEHIFEIIRDIXXXEYPHSLEELGVVKIEYVDVEKPPTDSPGYGTVSIQFHPTVPHCSLASMIGLSIRSKLKESKVLEPKGEHYYKLKVTCIEGTHNNSRDINKQLSDKERVSAAFENPKIMRLLREC 165
            P+ L+N  P V   K   +       NPD  +P+  +E IF+ IRDI   E+P +LE+L VV+ E + V+K   ++     V ++F PT+PHCS+A++IGL+IR+KL+ S  L P      K+ V     TH ++  INKQL+DKERV+AA ENP ++R + +C
Sbjct:    3 PNKLENATPTVYATKSRSKKVSDSELNPDIIDPIDAQE-IFDYIRDINDPEHPLTLEQLNVVQEELIMVDKNDEET----IVDVEFVPTIPHCSMATLIGLTIRTKLQRS--LHPS----VKIIVRIAPDTHMSADAINKQLADKERVAAALENPDLLRAVNQC 155          
The following BLAST results are available for this feature:
BLAST of Ggra3936.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IQQ43.050e-7667.92Mitotic spindle-associated MMXD complex subunit MI... [more]
A0A0L1KI902.380e-2838.73MIP18 family protein n=1 Tax=Perkinsela sp. CCAP 1... [more]
A0A3S1GZK03.280e-2843.56FeS_assembly_P domain-containing protein n=1 Tax=E... [more]
A0A150G9L77.230e-2841.77FeS_assembly_P domain-containing protein n=1 Tax=G... [more]
K1QP223.220e-2745.45UPF0195 protein FAM96A n=1 Tax=Crassostrea gigas T... [more]
A0A8B8DZ543.220e-2744.70MIP18 family protein FAM96A-like n=2 Tax=Crassostr... [more]
cytosolic iron-sulfur assembly component 2A-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE552601.680e-2646.56cytosolic iron-sulfur assembly component 2A-like n... [more]
cytosolic iron-sulfur assembly component 2A n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035991052.970e-2646.21cytosolic iron-sulfur assembly component 2A n=1 Ta... [more]
A0A1I7S9N23.440e-2639.75(pine wood nematode) hypothetical protein n=2 Tax=... [more]
A0A182EIR54.860e-2640.85FeS_assembly_P domain-containing protein n=4 Tax=O... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.10.250.1280coord: 136..166
e-value: 1.2E-12
score: 49.3
NoneNo IPR availablePANTHERPTHR12377:SF2CYTOSOLIC IRON-SULFUR ASSEMBLY COMPONENT 2Acoord: 38..166
IPR002744MIP18 family-likePFAMPF01883FeS_assembly_Pcoord: 38..110
e-value: 1.4E-10
score: 41.2
IPR034904Fe-S cluster assembly domain superfamilyGENE3D3.30.300.130coord: 37..134
e-value: 8.0E-27
score: 94.9
IPR034904Fe-S cluster assembly domain superfamilySUPERFAMILY117916Fe-S cluster assembly (FSCA) domain-likecoord: 37..110
IPR039796MIP18 familyPANTHERPTHR12377UNCHARACTERIZEDcoord: 38..166

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000908_piloncontigtig00000908_pilon:160152..160664 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3936.t1Ggra3936.t1Gracilaria gracilis GNS1m malemRNAtig00000908_pilon 160152..160664 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3936.t1 ID=Ggra3936.t1|Name=Ggra3936.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=171bp
MRAAYGSSVHPDTLDNPNPEVKVLKREIRNPDEPLTLKEHIFEIIRDIRD
PEYPHSLEELGVVKIEYVDVEKPPTDSPGYGTVSIQFHPTVPHCSLASMI
GLSIRSKLKESKVLEPKGEHYYKLKVTCIEGTHNNSRDINKQLSDKERVS
AAFENPKIMRLLRECTDNLP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002744MIP18-like
IPR034904FSCA_dom_sf
IPR039796MIP18